position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2026/04/21/peak-motifs.2026-04-21.024047_2026-04-21.024047_gRzMOf/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 2 -ci 20 -img_format png -title ok1127-B -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2026/04/21/peak-motifs.2026-04-21.024047_2026-04-21.024047_gRzMOf/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab Citation: van Helden, et al. (2000). Nucleic Acids Res 28, 1000-1010. Sequence file $RSAT/public_html/tmp/www-data/2026/04/21/peak-motifs.2026-04-21.024047_2026-04-21.024047_gRzMOf/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta Sequence format fasta Sequence type dna Output file $RSAT/public_html/tmp/www-data/2026/04/21/peak-motifs.2026-04-21.024047_2026-04-21.024047_gRzMOf/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab Oligo length 2 Occurrences counted on a single strands Conditions of applicability checked. Background model estimation: homogeneous repartition Sequence statistics: Nb of sequences 233 Sum of sequence lengths 101900 Min sequence length 0 Max sequence length 1000 Average sequence length 437 Possible positions 101667 Oligonucleotide statistics: Total occurrences 21749 Position interval parameters: Position interval 20 Number of windows 50 Total positions 101667 Degrees of freedom 49 K-mer clustering parameters: Number of clusters 0 Clustering method complete Position intervals: window [min,max] mid seq occ 1 -25 [-499,-480] -489.5 67 1316 2 -24 [-479,-460] -469.5 67 1340 3 -23 [-459,-440] -449.5 67 1340 4 -22 [-439,-420] -429.5 67 1340 5 -21 [-419,-400] -409.5 70 1358 6 -20 [-399,-380] -389.5 73 1421 7 -19 [-379,-360] -369.5 73 1460 8 -18 [-359,-340] -349.5 73 1460 9 -17 [-339,-320] -329.5 73 1460 10 -16 [-319,-300] -309.5 73 1460 11 -15 [-299,-280] -289.5 74 1478 12 -14 [-279,-260] -269.5 80 1562 13 -13 [-259,-240] -249.5 84 1608 14 -12 [-239,-220] -229.5 91 1740 15 -11 [-219,-200] -209.5 93 1840 16 -10 [-199,-180] -189.5 96 1880 17 -9 [-179,-160] -169.5 96 1920 18 -8 [-159,-140] -149.5 96 1920 19 -7 [-139,-120] -129.5 102 1965 20 -6 [-119,-100] -109.5 114 2190 21 -5 [-99,-80] -89.5 132 2439 22 -4 [-79,-60] -69.5 172 3031 23 -3 [-59,-40] -49.5 233 4183 24 -2 [-39,-20] -29.5 233 4660 25 -1 [-19,0] -9.5 233 4660 26 0 [1,20] 10.5 233 4660 27 1 [21,40] 30.5 233 4660 28 2 [41,60] 50.5 233 4061 29 3 [61,80] 70.5 168 2949 30 4 [81,100] 90.5 132 2402 31 5 [101,120] 110.5 112 2169 32 6 [121,140] 130.5 102 1953 33 7 [141,160] 150.5 96 1920 34 8 [161,180] 170.5 96 1920 35 9 [181,200] 190.5 96 1875 36 10 [201,220] 210.5 93 1834 37 11 [221,240] 230.5 91 1731 38 12 [241,260] 250.5 84 1604 39 13 [261,280] 270.5 80 1552 40 14 [281,300] 290.5 74 1476 41 15 [301,320] 310.5 73 1460 42 16 [321,340] 330.5 73 1460 43 17 [341,360] 350.5 73 1460 44 18 [361,380] 370.5 73 1460 45 19 [381,400] 390.5 73 1415 46 20 [401,420] 410.5 70 1349 47 21 [421,440] 430.5 67 1340 48 22 [441,460] 450.5 67 1340 49 23 [461,480] 470.5 67 1340 50 24 [481,500] 490.5 67 1246 Column headers 1 seq pattern sequence 2 id pattern identifier 3 occ pattern occurrences 4 chi2 observed chi-square 5 df degrees of freedom 6 Pval P-value (probability for one word to be a false positive) 7 Eval E-value; expected number of false positives (Eval = Pval * nb_tests) 8 sig Significance (sig = -log10(Eval)) 9 rank rank of the pattern according to sorting criterion 10 -489.5 occurrences in window 1 [-499,-480] 11 -469.5 occurrences in window 2 [-479,-460] 12 -449.5 occurrences in window 3 [-459,-440] 13 -429.5 occurrences in window 4 [-439,-420] 14 -409.5 occurrences in window 5 [-419,-400] 15 -389.5 occurrences in window 6 [-399,-380] 16 -369.5 occurrences in window 7 [-379,-360] 17 -349.5 occurrences in window 8 [-359,-340] 18 -329.5 occurrences in window 9 [-339,-320] 19 -309.5 occurrences in window 10 [-319,-300] 20 -289.5 occurrences in window 11 [-299,-280] 21 -269.5 occurrences in window 12 [-279,-260] 22 -249.5 occurrences in window 13 [-259,-240] 23 -229.5 occurrences in window 14 [-239,-220] 24 -209.5 occurrences in window 15 [-219,-200] 25 -189.5 occurrences in window 16 [-199,-180] 26 -169.5 occurrences in window 17 [-179,-160] 27 -149.5 occurrences in window 18 [-159,-140] 28 -129.5 occurrences in window 19 [-139,-120] 29 -109.5 occurrences in window 20 [-119,-100] 30 -89.5 occurrences in window 21 [-99,-80] 31 -69.5 occurrences in window 22 [-79,-60] 32 -49.5 occurrences in window 23 [-59,-40] 33 -29.5 occurrences in window 24 [-39,-20] 34 -9.5 occurrences in window 25 [-19,0] 35 10.5 occurrences in window 26 [1,20] 36 30.5 occurrences in window 27 [21,40] 37 50.5 occurrences in window 28 [41,60] 38 70.5 occurrences in window 29 [61,80] 39 90.5 occurrences in window 30 [81,100] 40 110.5 occurrences in window 31 [101,120] 41 130.5 occurrences in window 32 [121,140] 42 150.5 occurrences in window 33 [141,160] 43 170.5 occurrences in window 34 [161,180] 44 190.5 occurrences in window 35 [181,200] 45 210.5 occurrences in window 36 [201,220] 46 230.5 occurrences in window 37 [221,240] 47 250.5 occurrences in window 38 [241,260] 48 270.5 occurrences in window 39 [261,280] 49 290.5 occurrences in window 40 [281,300] 50 310.5 occurrences in window 41 [301,320] 51 330.5 occurrences in window 42 [321,340] 52 350.5 occurrences in window 43 [341,360] 53 370.5 occurrences in window 44 [361,380] 54 390.5 occurrences in window 45 [381,400] 55 410.5 occurrences in window 46 [401,420] 56 430.5 occurrences in window 47 [421,440] 57 450.5 occurrences in window 48 [441,460] 58 470.5 occurrences in window 49 [461,480] 59 490.5 occurrences in window 50 [481,500]
| seq | id | occ | chi2 | df | Pval | Eval | sig | rank | -489.5 | -469.5 | -449.5 | -429.5 | -409.5 | -389.5 | -369.5 | -349.5 | -329.5 | -309.5 | -289.5 | -269.5 | -249.5 | -229.5 | -209.5 | -189.5 | -169.5 | -149.5 | -129.5 | -109.5 | -89.5 | -69.5 | -49.5 | -29.5 | -9.5 | 10.5 | 30.5 | 50.5 | 70.5 | 90.5 | 110.5 | 130.5 | 150.5 | 170.5 | 190.5 | 210.5 | 230.5 | 250.5 | 270.5 | 290.5 | 310.5 | 330.5 | 350.5 | 370.5 | 390.5 | 410.5 | 430.5 | 450.5 | 470.5 | 490.5 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| aa | aa | 2411 | 1968.6 | 49 | 0.0e+00 | 0 | 300 | 1 | 5 | 7 | 8 | 6 | 1 | 10 | 14 | 16 | 6 | 16 | 16 | 15 | 11 | 20 | 21 | 24 | 19 | 28 | 30 | 36 | 62 | 120 | 220 | 280 | 292 | 288 | 271 | 181 | 76 | 42 | 36 | 21 | 21 | 40 | 19 | 21 | 13 | 11 | 9 | 9 | 9 | 5 | 7 | 12 | 5 | 4 | 9 | 6 | 4 | 9 |
| tt | tt | 2598 | 1591.4 | 49 | 0.0e+00 | 0 | 300 | 2 | 16 | 11 | 13 | 6 | 11 | 11 | 18 | 17 | 23 | 8 | 12 | 16 | 22 | 24 | 32 | 12 | 44 | 28 | 41 | 49 | 77 | 127 | 201 | 276 | 262 | 278 | 258 | 208 | 114 | 58 | 61 | 45 | 27 | 21 | 31 | 17 | 16 | 10 | 16 | 5 | 4 | 6 | 12 | 7 | 8 | 13 | 5 | 4 | 9 | 8 |
| at | at | 1832 | 1337.5 | 49 | 0.0e+00 | 0 | 300 | 3 | 6 | 5 | 6 | 9 | 4 | 7 | 4 | 7 | 8 | 8 | 6 | 11 | 8 | 22 | 24 | 19 | 22 | 20 | 24 | 40 | 48 | 78 | 157 | 210 | 198 | 206 | 206 | 150 | 67 | 36 | 26 | 23 | 20 | 26 | 19 | 13 | 10 | 10 | 8 | 6 | 10 | 4 | 6 | 6 | 5 | 6 | 2 | 6 | 4 | 6 |
| ga | ga | 1452 | 1321.5 | 49 | 0.0e+00 | 0 | 300 | 4 | 1 | 3 | 6 | 2 | 3 | 5 | 5 | 6 | 6 | 8 | 4 | 3 | 9 | 12 | 12 | 13 | 11 | 14 | 18 | 29 | 30 | 63 | 164 | 175 | 183 | 154 | 174 | 112 | 45 | 29 | 16 | 13 | 14 | 15 | 10 | 11 | 6 | 7 | 5 | 6 | 7 | 6 | 6 | 6 | 6 | 3 | 4 | 2 | 5 | 5 |
| tc | tc | 1349 | 1289.0 | 49 | 0.0e+00 | 0 | 300 | 5 | 2 | 2 | 3 | 5 | 3 | 6 | 3 | 7 | 5 | 5 | 4 | 8 | 4 | 9 | 13 | 10 | 11 | 12 | 14 | 14 | 31 | 66 | 123 | 169 | 146 | 147 | 176 | 138 | 62 | 26 | 17 | 13 | 8 | 8 | 10 | 8 | 7 | 5 | 2 | 4 | 6 | 5 | 5 | 4 | 4 | 3 | 5 | 6 | 2 | 3 |
| ca | ca | 1298 | 1157.1 | 49 | 0.0e+00 | 0 | 300 | 6 | 3 | 7 | 2 | 5 | 3 | 5 | 4 | 5 | 2 | 6 | 8 | 7 | 5 | 11 | 10 | 15 | 9 | 13 | 11 | 19 | 21 | 67 | 130 | 162 | 132 | 142 | 149 | 127 | 64 | 29 | 12 | 10 | 11 | 9 | 14 | 15 | 4 | 8 | 8 | 5 | 3 | 7 | 3 | 3 | 2 | 3 | 4 | 2 | 1 | 1 |
| ag | ag | 1295 | 1074.0 | 49 | 0.0e+00 | 0 | 300 | 7 | 2 | 2 | 7 | 3 | 3 | 4 | 8 | 2 | 5 | 8 | 7 | 5 | 13 | 6 | 11 | 18 | 11 | 14 | 13 | 28 | 32 | 60 | 128 | 158 | 152 | 138 | 159 | 93 | 39 | 26 | 12 | 9 | 12 | 13 | 10 | 13 | 9 | 6 | 6 | 6 | 8 | 6 | 3 | 5 | 4 | 1 | 6 | 3 | 6 | 2 |
| tg | tg | 1435 | 1008.2 | 49 | 0.0e+00 | 0 | 300 | 8 | 4 | 5 | 3 | 2 | 9 | 5 | 6 | 10 | 6 | 5 | 7 | 9 | 7 | 20 | 13 | 15 | 26 | 17 | 14 | 22 | 34 | 62 | 145 | 150 | 169 | 164 | 131 | 109 | 60 | 30 | 20 | 16 | 14 | 13 | 17 | 12 | 9 | 7 | 7 | 4 | 3 | 6 | 7 | 7 | 12 | 6 | 0 | 5 | 5 | 6 |
| ct | ct | 1102 | 954.7 | 49 | 0.0e+00 | 0 | 300 | 9 | 4 | 4 | 4 | 5 | 5 | 6 | 5 | 4 | 4 | 4 | 6 | 8 | 7 | 7 | 6 | 6 | 13 | 12 | 8 | 16 | 37 | 51 | 124 | 131 | 102 | 122 | 120 | 108 | 50 | 23 | 19 | 8 | 6 | 6 | 7 | 5 | 6 | 3 | 1 | 1 | 3 | 7 | 8 | 3 | 5 | 2 | 2 | 2 | 3 | 3 |
| ac | ac | 1024 | 909.3 | 49 | 0.0e+00 | 0 | 300 | 10 | 3 | 9 | 2 | 3 | 4 | 4 | 5 | 6 | 3 | 5 | 10 | 6 | 7 | 5 | 9 | 6 | 7 | 5 | 11 | 16 | 26 | 49 | 127 | 108 | 101 | 104 | 113 | 109 | 43 | 28 | 10 | 7 | 9 | 6 | 7 | 11 | 4 | 4 | 4 | 4 | 1 | 7 | 5 | 1 | 3 | 3 | 2 | 1 | 0 | 1 |
| cc | cc | 807 | 844.3 | 49 | 0.0e+00 | 0 | 300 | 11 | 4 | 5 | 3 | 2 | 0 | 4 | 3 | 0 | 4 | 0 | 1 | 3 | 2 | 7 | 5 | 6 | 3 | 11 | 8 | 8 | 27 | 32 | 96 | 98 | 90 | 88 | 97 | 75 | 50 | 17 | 5 | 2 | 10 | 5 | 1 | 6 | 6 | 5 | 1 | 1 | 1 | 2 | 3 | 1 | 4 | 0 | 3 | 1 | 0 | 1 |
| ta | ta | 1377 | 813.2 | 49 | 0.0e+00 | 0 | 300 | 12 | 9 | 5 | 8 | 8 | 5 | 4 | 9 | 3 | 8 | 8 | 11 | 11 | 15 | 10 | 21 | 16 | 19 | 15 | 16 | 39 | 46 | 67 | 116 | 129 | 144 | 149 | 145 | 100 | 38 | 33 | 22 | 18 | 16 | 19 | 11 | 12 | 14 | 4 | 6 | 5 | 9 | 3 | 6 | 3 | 2 | 5 | 4 | 3 | 6 | 2 |
| gt | gt | 1232 | 792.2 | 49 | 0.0e+00 | 0 | 300 | 13 | 5 | 2 | 5 | 0 | 7 | 4 | 8 | 9 | 7 | 5 | 9 | 10 | 11 | 9 | 17 | 15 | 22 | 12 | 13 | 18 | 31 | 56 | 97 | 117 | 150 | 142 | 117 | 101 | 46 | 30 | 17 | 15 | 10 | 9 | 14 | 11 | 14 | 5 | 5 | 6 | 4 | 6 | 2 | 4 | 10 | 5 | 5 | 6 | 6 | 3 |
| gg | gg | 925 | 784.9 | 49 | 0.0e+00 | 0 | 300 | 14 | 2 | 3 | 0 | 0 | 5 | 5 | 1 | 3 | 5 | 3 | 2 | 8 | 9 | 9 | 6 | 17 | 7 | 8 | 8 | 10 | 21 | 56 | 81 | 94 | 127 | 107 | 102 | 74 | 28 | 20 | 11 | 3 | 6 | 4 | 7 | 4 | 10 | 5 | 7 | 8 | 6 | 3 | 1 | 8 | 5 | 1 | 2 | 7 | 4 | 2 |
| cg | cg | 784 | 753.6 | 49 | 0.0e+00 | 0 | 300 | 15 | 3 | 4 | 3 | 1 | 1 | 3 | 3 | 4 | 5 | 5 | 3 | 4 | 6 | 6 | 5 | 7 | 7 | 3 | 8 | 5 | 15 | 37 | 80 | 91 | 97 | 88 | 95 | 78 | 33 | 12 | 3 | 6 | 8 | 2 | 0 | 3 | 5 | 5 | 2 | 6 | 3 | 3 | 2 | 5 | 2 | 5 | 4 | 4 | 2 | 2 |
| gc | gc | 828 | 738.7 | 49 | 0.0e+00 | 0 | 300 | 16 | 3 | 6 | 2 | 3 | 2 | 4 | 4 | 1 | 3 | 6 | 2 | 5 | 6 | 10 | 2 | 12 | 9 | 10 | 2 | 8 | 14 | 42 | 92 | 102 | 87 | 94 | 87 | 79 | 38 | 9 | 6 | 5 | 8 | 4 | 4 | 5 | 5 | 6 | 4 | 4 | 3 | 4 | 4 | 5 | 3 | 3 | 3 | 2 | 3 | 3 |
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