One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2026/04/21/peak-motifs.2026-04-21.024047_2026-04-21.024047_gRzMOf/results/discovered_motifs/positions_6nt_m1/peak-motifs_positions_6nt_m1.tf -format2 tf -file2 $RSAT/public_html/motif_databases/cisBP2/cisBP_Caenorhabditis_elegans_2019.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/04/21/peak-motifs.2026-04-21.024047_2026-04-21.024047_gRzMOf/results/discovered_motifs/positions_6nt_m1/peak-motifs_positions_6nt_m1_vs_db_cisBP_Caenorhabditis_elegans

One-to-n matrix alignment; reference matrix: positions_6nt_m1_shift5 ; 97 matrices ; sort_field=Ncor

Matrix nameAligned logoscor Ncor Aligned matrices
positions_6nt_m1_shift5 (positions_6nt_m1)     
; positions_6nt_m1; m=0 (reference); ncol1=11; shift=5; ncol=16; -----ywAAAAATwaw
; Alignment reference
a	0	0	0	0	0	80	211	443	443	443	441	443	0	181	178	172
c	0	0	0	0	0	122	89	0	0	0	0	0	0	58	81	25
g	0	0	0	0	0	79	25	0	0	0	0	0	0	6	82	39
t	0	0	0	0	0	162	118	0	0	0	2	0	443	198	102	207
M00070_2.00_shift5 (sox-2,sox-3,sox-4) 
; positions_6nt_m1 versus M00070_2.00 (sox-2,sox-3,sox-4); m=1/96; ncol2=11; w=0; offset=0; strand=D; shift=5; score=0.767849; -----hrAACAATwrt
; cor=; Ncor=
a	0	0	0	0	0	26.8573	50.9793	84.8016	99.9893	0.00358234	90.3786	99.9893	0.00358234	59.126	34.5743	19.9374
c	0	0	0	0	0	27.2224	9.8806	5.06614	0.00358234	90.3786	0.00358234	0.00358234	0.00358234	7.11547	15.123	19.9374
g	0	0	0	0	0	17.8881	29.2595	5.06614	0.00358234	0.00358234	0.00358234	0.00358234	0.00358234	7.11547	25.7625	19.9374
t	0	0	0	0	0	28.0322	9.8806	5.06614	0	9.61423	9.61423	0	99.9893	26.6431	24.5401	40.1877
M07439_2.00_shift7 (M07439_2.00) 
; positions_6nt_m1 versus M07439_2.00; m=2/96; ncol2=9; w=0; offset=2; strand=D; shift=7; score=0.751493; -------awAAATwwt
; cor=; Ncor=
a	0	0	0	0	0	0	0	59	61.6162	76	92	100	0	34	32	22
c	0	0	0	0	0	0	0	11	5.05051	0	0	0	0	2	8	14
g	0	0	0	0	0	0	0	15	5.05051	0	0	0	0	2	8	14
t	0	0	0	0	0	0	0	15	28.2828	24	8	0	100	62	52	50
M08479_2.00_shift7 (M08479_2.00) 
; positions_6nt_m1 versus M08479_2.00; m=3/96; ncol2=9; w=0; offset=2; strand=D; shift=7; score=0.75063; -------awAAATwwt
; cor=; Ncor=
a	0	0	0	0	0	0	0	59	61	76	92	100	0	34	32	22
c	0	0	0	0	0	0	0	11	5	0	0	0	0	2	8	14
g	0	0	0	0	0	0	0	15	5	0	0	0	0	2	8	14
t	0	0	0	0	0	0	0	15	29	24	8	0	100	62	52	50
M00627_2.00_rc_shift5 (K11D2.4_rc) 
; positions_6nt_m1 versus M00627_2.00_rc (K11D2.4_rc); m=4/96; ncol2=10; w=0; offset=0; strand=R; shift=5; score=0.735628; -----akAAAAAasw-
; cor=; Ncor=
a	0	0	0	0	0	52.8741	23.5058	85.3694	91.8917	94.5718	92.9401	96.0132	45.9014	18.1025	29.2221	0
c	0	0	0	0	0	23.9966	7.74654	1.51738	1.87876	0.979571	1.82568	1.8121	19.8161	27.2772	21.2196	0
g	0	0	0	0	0	15.4547	34.0301	4.46821	1.41993	1.50585	1.4077	0.433651	18.8497	31.3762	17.9023	0
t	0	0	0	0	0	7.67458	34.7176	8.64505	4.80959	2.94279	3.82652	1.74105	15.4328	23.2441	31.656	0
M00710_2.00_shift5 (egl-13,sox-2,sox-3,sox-4) 
; positions_6nt_m1 versus M00710_2.00 (egl-13,sox-2,sox-3,sox-4); m=5/96; ncol2=10; w=0; offset=0; strand=D; shift=5; score=0.715582; -----wrAACAATag-
; cor=; Ncor=
a	0	0	0	0	0	45.0923	29.8333	89.6801	91.0076	8.96351	99.9567	99.9567	0.0144469	60.968	24.0264	0
c	0	0	0	0	0	14.8771	20.418	0.0144469	8.96351	80.731	0.0144469	0.0144469	0.0144469	10.1374	23.7286	0
g	0	0	0	0	0	14.8771	28.9058	0.0144469	0.0144469	0.0144469	0.0144469	0.0144469	0.0144469	10.1374	37.1677	0
t	0	0	0	0	0	25.1536	20.8429	10.291	0.0144469	10.291	0.0144469	0.0144469	99.9567	18.7572	15.0773	0
M09597_2.00_shift4 (mef-2) 
; positions_6nt_m1 versus M09597_2.00 (mef-2); m=6/96; ncol2=12; w=-1; offset=-1; strand=D; shift=4; score=0.702375; ----dcyaaAAATAGm
; cor=; Ncor=
a	0	0	0	0	25.9	18.9	1.7	64.1	59	88.7	87.1	89	3	93.5	19.5	35.2
c	0	0	0	0	9.9	60	44.4	11.9	3.3	0.6	0.6	1	3	0.2	6.2	43.9
g	0	0	0	0	33.7	6.5	0.1	7.8	17.5	4.3	2.4	0.7	1.1	5.8	69.3	10
t	0	0	0	0	30.5	14.6	53.8	16.2	20.2	6.4	9.9	9.3	92.9	0.5	5	10.8
M11309_2.00_shift5 (sox-2,sox-3,sox-4) 
; positions_6nt_m1 versus M11309_2.00 (sox-2,sox-3,sox-4); m=7/96; ncol2=10; w=0; offset=0; strand=D; shift=5; score=0.690964; -----ywAACAATrs-
; cor=; Ncor=
a	0	0	0	0	0	18.1818	31.8182	91.3043	95.6522	0	100	95.6522	0	43.4783	21.7391	0
c	0	0	0	0	0	27.2727	18.1818	0	0	95.6522	0	4.34783	0	13.0435	30.4348	0
g	0	0	0	0	0	13.6364	13.6364	4.34783	4.34783	0	0	0	0	26.087	26.087	0
t	0	0	0	0	0	40.9091	36.3636	4.34783	0	4.34783	0	0	100	17.3913	21.7391	0
M09250_2.00_shift5 (mef-2) 
; positions_6nt_m1 versus M09250_2.00 (mef-2); m=8/96; ncol2=12; w=0; offset=0; strand=D; shift=5; score=0.686051; -----CTAwAAATAGm
; cor=; Ncor=
a	0	0	0	0	0	8.8	1	84.6	60.4	86	90	93.6	2.6	97.2	15.8	36.8
c	0	0	0	0	0	78.6	23.6	5.4	1.2	0.6	0.8	0.4	0.2	0.6	6	50
g	0	0	0	0	0	3.2	0	1.4	8.6	4	1.2	0.6	0.2	2	75.8	6.4
t	0	0	0	0	0	9.4	75.4	8.6	29.8	9.4	8	5.4	97	0.2	2.4	6.8
M09248_2.00_shift4 (mef-2) 
; positions_6nt_m1 versus M09248_2.00 (mef-2); m=9/96; ncol2=13; w=-1; offset=-1; strand=D; shift=4; score=0.675054; ----kcyAAAAATAGm
; cor=; Ncor=
a	0	0	0	0	17.4	14	0.8	69.8	74	92.8	90.2	93.2	3	93.6	23.2	38.4
c	0	0	0	0	10.2	63.4	42.2	12.2	2.2	1	0.6	0.2	0.6	0	4.6	42
g	0	0	0	0	36.4	7.2	0.4	4.2	9	3.8	1.2	0.6	1.6	6.2	69.2	9.2
t	0	0	0	0	36	15.4	56.6	13.8	14.8	2.4	8	6	94.8	0.2	3	10.4
M09247_2.00_shift4 (mef-2) 
; positions_6nt_m1 versus M09247_2.00 (mef-2); m=10/96; ncol2=13; w=-1; offset=-1; strand=D; shift=4; score=0.674699; ----kcyAAAAATAGm
; cor=; Ncor=
a	0	0	0	0	15.2	14.4	1.2	70.8	77.2	92.8	89.2	92.6	5.8	94.2	19.8	40.4
c	0	0	0	0	10.4	65.8	43.6	11.6	1.2	1	0.4	0.8	0.8	0	5	38.8
g	0	0	0	0	38.4	3.8	0.2	3.6	8.2	4.8	0.2	0.2	0.6	5.6	72.4	8
t	0	0	0	0	36	16	55	14	13.4	1.4	10.2	6.4	92.8	0.2	2.8	12.8
M03340_2.00_shift4 (mef-2) 
; positions_6nt_m1 versus M03340_2.00 (mef-2); m=11/96; ncol2=12; w=-1; offset=-1; strand=D; shift=4; score=0.658048; ----kCTAwAAATAGm
; cor=; Ncor=
a	0	0	0	0	13.5732	4.73978	0	99.2843	53.1346	86.0816	95.0098	95.7594	0	99.692	14.3105	54.4715
c	0	0	0	0	7.03189	90.2416	0.918367	0.306748	0	0.177305	0	0.394477	0.20555	0.205339	0.433651	33.243
g	0	0	0	0	38.8389	0.27881	0	0	0.20555	0	0	0	0	0	84.2151	3.7037
t	0	0	0	0	40.556	4.73978	99.0816	0.408998	46.6598	13.7411	4.99022	3.84615	99.7945	0.102669	1.04076	8.58175
M00651_2.00_rc_shift6 (mex-6_rc) 
; positions_6nt_m1 versus M00651_2.00_rc (mex-6_rc); m=12/96; ncol2=10; w=0; offset=1; strand=R; shift=6; score=0.656699; ------waATAATAAr
; cor=; Ncor=
a	0	0	0	0	0	0	29.2863	66.3373	79.0552	17.5069	99.9633	99.9633	12.0422	99.9633	76.2969	39.2485
c	0	0	0	0	0	0	20.5145	8.16601	12.1974	0.0122303	0.0122303	0.0122303	0.0122303	0.0122303	4.49775	16.8462
g	0	0	0	0	0	0	20.5145	8.16601	0.0122303	0.0122303	0.0122303	0.0122303	0.0122303	0.0122303	14.7076	27.0591
t	0	0	0	0	0	0	29.6848	17.3306	8.73512	82.4686	0.0122303	0.0122303	87.9333	0.0122303	4.49775	16.8462
M01931_2.00_rc_shift5 (M01931_2.00_rc) 
; positions_6nt_m1 versus M01931_2.00_rc; m=13/96; ncol2=10; w=0; offset=0; strand=R; shift=5; score=0.650275; -----twATAmATTa-
; cor=; Ncor=
a	0	0	0	0	0	20.213	42.7268	90.7895	9.08049	99.9536	38.1045	99.9536	0.0154783	13.8675	44.9154	0
c	0	0	0	0	0	20.213	9.78637	0.0154783	0.0154783	0.0154783	48.9012	0.0154783	0.0154783	4.80252	24.6263	0
g	0	0	0	0	0	20.213	19.5482	0.0154783	0.0154783	0.0154783	0.0154783	0.0154783	0.0154783	4.80252	15.2291	0
t	0	0	0	0	0	39.3611	27.9387	9.17957	90.8886	0.0154783	12.9788	0.0154783	99.9536	76.5274	15.2291	0
M05894_2.00_shift6 (sox-2,sox-3,sox-4) 
; positions_6nt_m1 versus M05894_2.00 (sox-2,sox-3,sox-4); m=14/96; ncol2=10; w=0; offset=1; strand=D; shift=6; score=0.647531; ------waACAATrrr
; cor=; Ncor=
a	0	0	0	0	0	0	39.6	61.9	97	0.7	97.7	97.2	7.6	44.1	25.6	30.3
c	0	0	0	0	0	0	7.6	14.7	1.1	90.2	0.6	0.7	1.4	3.3	18.8	17.9
g	0	0	0	0	0	0	20	16.7	0.8	2	0.8	0.7	0.9	37.7	44.3	28.5
t	0	0	0	0	0	0	32.8	6.7	1.1	7.1	0.8	1.4	90.1	14.9	11.3	23.3
M01687_2.00_shift8 (M01687_2.00) 
; positions_6nt_m1 versus M01687_2.00; m=15/96; ncol2=8; w=0; offset=3; strand=D; shift=8; score=0.634834; --------AAAWTAAT
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	83.9058	88.161	83.2686	69.3951	16.6759	83.2686	76.4101	18.5281
c	0	0	0	0	0	0	0	0	0.0399361	0.0293772	0.0277469	0.0277469	0.0277469	0.0277469	2.9671	3.73521
g	0	0	0	0	0	0	0	0	12.0208	0.0293772	0.0277469	0.0277469	0.0277469	0.0277469	0.0293772	0.0369822
t	0	0	0	0	0	0	0	0	4.03355	11.7803	16.6759	30.5494	83.2686	16.6759	20.5934	77.6997
M09255_2.00_shift3 (mef-2) 
; positions_6nt_m1 versus M09255_2.00 (mef-2); m=16/96; ncol2=14; w=-2; offset=-2; strand=D; shift=3; score=0.62384; ---wkcyAaAAATAGm
; cor=; Ncor=
a	0	0	0	32.998	16.499	14.0845	2.01207	73.8431	67.4044	86.7203	91.3481	89.1348	4.42656	89.7384	21.328	41.2475
c	0	0	0	10.2616	11.2676	67.2032	35.4125	8.4507	2.61569	2.01207	1.40845	1.20724	3.42052	0.804829	5.4326	38.2294
g	0	0	0	20.7243	40.2414	5.03018	1.20724	2.8169	12.4748	5.6338	1.60966	2.01207	1.40845	7.84708	68.2093	8.2495
t	0	0	0	36.0161	31.992	13.6821	61.3682	14.8893	17.505	5.6338	5.6338	7.64588	90.7445	1.60966	5.03018	12.2736
M01209_2.00_shift8 (lin-28) 
; positions_6nt_m1 versus M01209_2.00 (lin-28); m=17/96; ncol2=8; w=0; offset=3; strand=D; shift=8; score=0.619759; --------AAAATAAA
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	97.1154	97.1154	97.1154	97.1154	0.961538	97.1154	97.1154	97.1154
c	0	0	0	0	0	0	0	0	0.961538	0.961538	0.961538	0.961538	0.961538	0.961538	0.961538	0.961538
g	0	0	0	0	0	0	0	0	0.961538	0.961538	0.961538	0.961538	0.961538	0.961538	0.961538	0.961538
t	0	0	0	0	0	0	0	0	0.961538	0.961538	0.961538	0.961538	97.1154	0.961538	0.961538	0.961538
M00613_2.00_rc_shift5 (lin-29_rc) 
; positions_6nt_m1 versus M00613_2.00_rc (lin-29_rc); m=18/96; ncol2=8; w=0; offset=0; strand=R; shift=5; score=0.606774; -----gAAAAAAa---
; cor=; Ncor=
a	0	0	0	0	0	24.2861	77.7565	83.8146	98.96	98.96	91.8922	71.8555	56.9619	0	0	0
c	0	0	0	0	0	15.7196	9.09733	6.06826	0.0100969	0.0100969	3.03918	15.6289	12.7964	0	0	0
g	0	0	0	0	0	42.8469	3.03918	2.02948	0.0100969	0.0100969	1.01979	8.34027	10.4719	0	0	0
t	0	0	0	0	0	17.1473	10.107	8.08764	1.01979	1.01979	4.04887	4.17534	19.7699	0	0	0
M09251_2.00_shift5 (mef-2) 
; positions_6nt_m1 versus M09251_2.00 (mef-2); m=19/96; ncol2=14; w=0; offset=0; strand=D; shift=5; score=0.606072; -----CyaAAAATAGm
; cor=; Ncor=
a	0	0	0	0	0	13	4	63.4	70	90.2	91.4	86.8	8	90.8	14	35.4
c	0	0	0	0	0	69.6	48.8	14	4.8	1.4	0.4	0.6	3.2	0.2	4	37.4
g	0	0	0	0	0	5.2	0	5.6	11.8	4.8	0.6	2	2.6	8.8	77.2	10.4
t	0	0	0	0	0	12.2	47.2	17	13.4	3.6	7.6	10.6	86.2	0.2	4.8	16.8
M01680_2.00_shift8 (M01680_2.00) 
; positions_6nt_m1 versus M01680_2.00; m=20/96; ncol2=8; w=0; offset=3; strand=D; shift=8; score=0.602012; --------AAAATAAA
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	99.0132	99.2574	99.2574	99.2574	25	99.2574	99.2574	99.0132
c	0	0	0	0	0	0	0	0	0.328947	0.247525	0.247525	0.247525	0.247525	0.247525	0.247525	0.328947
g	0	0	0	0	0	0	0	0	0.328947	0.247525	0.247525	0.247525	0.247525	0.247525	0.247525	0.328947
t	0	0	0	0	0	0	0	0	0.328947	0.247525	0.247525	0.247525	74.505	0.247525	0.247525	0.328947
M02532_2.00_shift4 (lin-54) 
; positions_6nt_m1 versus M02532_2.00 (lin-54); m=21/96; ncol2=13; w=-1; offset=-1; strand=D; shift=4; score=0.597876; ----twttwAAATTtt
; cor=; Ncor=
a	0	0	0	0	21.7767	26.1094	14.2765	9.59039	47.8285	91.7648	99.9727	99.9727	11.4403	7.41257	10.7326	24.396
c	0	0	0	0	21.7767	17.5965	14.2765	18.1194	13.1754	8.21699	0.00909916	0.00909916	3.23238	7.41257	10.7326	24.396
g	0	0	0	0	21.7767	17.5965	14.2765	9.59039	12.7056	0.00909916	0.00909916	0.00909916	3.23238	7.41257	10.7326	24.0964
t	0	0	0	0	34.6698	38.6975	57.1704	62.6998	26.2905	0	0	0	82.095	77.7623	67.8023	27.1117
M08213_2.00_shift8 (mef-2) 
; positions_6nt_m1 versus M08213_2.00 (mef-2); m=22/96; ncol2=8; w=0; offset=3; strand=D; shift=8; score=0.591941; --------AAAATAgc
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	80.9412	88.353	86.4705	84.7059	12.2353	88	15.8824	22.9412
c	0	0	0	0	0	0	0	0	4.5882	2.8235	3.8824	3.6471	7.7647	0.5882	9.17649	58.9411
g	0	0	0	0	0	0	0	0	7.7647	4.5882	3.7647	4.8235	7.0588	5.4118	67.5293	7.88239
t	0	0	0	0	0	0	0	0	6.7059	4.2353	5.88239	6.8235	72.9412	6	7.41179	10.2353
M09252_2.00_shift3 (mef-2) 
; positions_6nt_m1 versus M09252_2.00 (mef-2); m=23/96; ncol2=14; w=-2; offset=-2; strand=D; shift=3; score=0.589316; ---dkCTAwAAATAGm
; cor=; Ncor=
a	0	0	0	31.8	16	9.2	1.2	86.4	60	87.2	89	93.4	3.4	96.8	16	36.6
c	0	0	0	8.6	6.4	78.8	22.4	5	1.4	0.6	0.8	0.4	0.4	0.6	6	48.8
g	0	0	0	28.6	47.4	3.4	0	1	9	3.2	2.2	0.4	0	2.4	75.4	7.4
t	0	0	0	31	30.2	8.6	76.4	7.6	29.6	9	8	5.8	96.2	0.2	2.6	7.2
M01108_2.00_shift5 (M01108_2.00) 
; positions_6nt_m1 versus M01108_2.00; m=24/96; ncol2=8; w=0; offset=0; strand=D; shift=5; score=0.587078; -----waawwAww---
; cor=; Ncor=
a	0	0	0	0	0	42.3349	53.6851	59.1376	50.1697	57.7953	85.2706	52.0642	27.9377	0	0	0
c	0	0	0	0	0	12.4985	10.731	5.31146	3.50928	2.99489	2.84576	1.48065	6.82081	0	0	0
g	0	0	0	0	0	19.9976	18.4144	11.0217	4.83273	1.98756	1.85119	3.82852	6.68575	0	0	0
t	0	0	0	0	0	25.169	17.1695	24.5293	41.4883	37.2223	10.0325	42.6266	58.5557	0	0	0
M08149_2.00_shift2 (mef-2) 
; positions_6nt_m1 versus M08149_2.00 (mef-2); m=25/96; ncol2=15; w=-3; offset=-3; strand=D; shift=2; score=0.586764; --rdkcyAAAAATAGm
; cor=; Ncor=
a	0	0	31.9149	33.1824	19.5111	17.2929	0	73.1553	77.2295	95.3825	96.469	96.6501	2.53508	98.5514	17.6098	44.1376
c	0	0	14.5315	6.83567	8.87279	63.9203	44.5903	11.589	1.44862	0	0	0	2.8067	0	5.43232	37.8452
g	0	0	30.6021	25.9393	37.2114	3.53101	0	3.34993	10.9099	3.93843	0.0905387	0.181077	0	1.44862	75.6451	6.69986
t	0	0	22.9516	34.0426	34.4047	15.2558	55.4097	11.9058	10.412	0.67904	3.44047	3.16885	94.6582	0	1.31281	11.3173
M01104_2.00_shift4 (M01104_2.00) 
; positions_6nt_m1 versus M01104_2.00; m=26/96; ncol2=10; w=-1; offset=-1; strand=D; shift=4; score=0.586566; ----waaawwAwwh--
; cor=; Ncor=
a	0	0	0	0	27.5242	35.4896	39.3688	44.6255	36.9831	50.4457	79.6844	60.5595	29.6896	30.638	0	0
c	0	0	0	0	20.8023	19.4771	19.9449	10.1584	8.58882	4.48571	0.0336438	0.00624251	0.0115716	26.108	0	0
g	0	0	0	0	17.0315	22.6292	17.5135	22.608	12.3106	7.69751	0.0336438	0.0397012	2.88867	10.7214	0	0
t	0	0	0	0	34.642	22.404	23.1727	22.608	42.1174	37.3711	20.2484	39.3945	67.4102	32.5326	0	0
M01106_2.00_shift5 (M01106_2.00) 
; positions_6nt_m1 versus M01106_2.00; m=27/96; ncol2=8; w=0; offset=0; strand=D; shift=5; score=0.585235; -----aawwwAww---
; cor=; Ncor=
a	0	0	0	0	0	48.3861	55.0968	56.1595	51.3647	59.7236	76.3937	58.2011	38.0653	0	0	0
c	0	0	0	0	0	9.20009	14.0005	5.86027	4.01064	3.7424	3.69101	0.774067	2.03258	0	0	0
g	0	0	0	0	0	21.525	16.7616	11.4524	6.95145	3.09481	3.37333	2.78404	0.203784	0	0	0
t	0	0	0	0	0	20.8888	14.1412	26.5279	37.6733	33.4392	16.542	38.2408	59.6983	0	0	0
M07979_2.00_shift2 (mef-2) 
; positions_6nt_m1 versus M07979_2.00 (mef-2); m=28/96; ncol2=15; w=-3; offset=-3; strand=D; shift=2; score=0.584684; --rdkcyAAAAATAGm
; cor=; Ncor=
a	0	0	31.0573	31.0573	16.0793	14.978	0	71.1454	70.4846	93.8326	90.5286	92.511	3.304	95.815	20.9251	41.63
c	0	0	15.4185	10.5727	10.1322	64.0969	50.6608	12.9956	1.9824	0	0.4405	0	0	0	5.28631	35.4626
g	0	0	30.6167	27.0925	38.5463	5.7269	0	2.4229	11.4537	4.4053	0.2203	0	0	4.185	70.2644	9.03079
t	0	0	22.9075	31.2775	35.2423	15.1982	49.3392	13.4361	16.0793	1.7621	8.8106	7.489	96.696	0	3.5242	13.8767
M01671_2.00_shift5 (M01671_2.00) 
; positions_6nt_m1 versus M01671_2.00; m=29/96; ncol2=9; w=0; offset=0; strand=D; shift=5; score=0.582145; -----ssrrwAAwt--
; cor=; Ncor=
a	0	0	0	0	0	24.1564	20.939	34.5181	32.972	41.1309	71.0467	88.6835	45.4667	21.2559	0	0
c	0	0	0	0	0	26.697	30.6188	18.2011	17.9153	4.29202	4.77473	0.0920958	0.977243	17.7544	0	0
g	0	0	0	0	0	26.1683	25.0685	30.3102	25.1701	20.2217	0.0514748	4.50449	3.80753	9.74383	0	0
t	0	0	0	0	0	22.9783	23.3737	16.9706	23.9426	34.3554	24.1271	6.7199	49.7485	51.2458	0	0
M07980_2.00_shift2 (mef-2) 
; positions_6nt_m1 versus M07980_2.00 (mef-2); m=30/96; ncol2=15; w=-3; offset=-3; strand=D; shift=2; score=0.575956; --rdkcyAAAAATAGm
; cor=; Ncor=
a	0	0	31.3525	29.7131	13.9344	14.3443	0	69.0574	71.9263	93.0328	89.3443	88.9344	3.6885	93.8525	17.2131	38.1148
c	0	0	14.5492	11.4754	12.2951	64.7541	53.0738	14.5492	1.6393	0	0.2049	0	0	0	5.32789	39.1393
g	0	0	31.1475	27.6639	38.7295	4.918	0.4098	3.6885	12.9098	4.918	0.2049	1.0246	0.4098	6.1475	74.5901	8.6066
t	0	0	22.9508	31.1475	35.041	15.9836	46.5164	12.7049	13.5246	2.0492	10.2459	10.041	95.9017	0	2.8689	14.1393
M09253_2.00_shift3 (mef-2) 
; positions_6nt_m1 versus M09253_2.00 (mef-2); m=31/96; ncol2=15; w=-2; offset=-2; strand=D; shift=3; score=0.57435; ---dkcyAAAAATAGm
; cor=; Ncor=
a	0	0	0	34.8485	12.8788	17.0455	1.51515	75.3788	74.2424	92.0455	85.2273	84.0909	6.81818	93.5606	15.1515	44.697
c	0	0	0	7.19697	12.1212	65.1515	40.5303	8.33333	2.65152	0.378788	0	0.757576	1.51515	1.13636	5.68182	36.7424
g	0	0	0	25	44.697	2.27273	0	5.30303	6.81818	4.54545	4.16667	1.89394	0.378788	5.30303	76.8939	7.57576
t	0	0	0	32.9545	30.303	15.5303	57.9545	10.9848	16.2879	3.0303	10.6061	13.2576	91.2879	0	2.27273	10.9848
M00654_2.00_rc_shift5 (mab-23_rc) 
; positions_6nt_m1 versus M00654_2.00_rc (mab-23_rc); m=32/96; ncol2=8; w=0; offset=0; strand=R; shift=5; score=0.566785; -----ryraawwt---
; cor=; Ncor=
a	0	0	0	0	0	27.2171	24.6535	60.2373	53.36	54.9449	45.2693	27.4258	19.9192	0	0	0
c	0	0	0	0	0	23.8992	32.2952	5.09517	20.0266	10.1384	8.78133	11.7222	18.5725	0	0	0
g	0	0	0	0	0	26.1499	11.0775	27.0664	15.2879	11.8975	11.7356	21.1467	21.7951	0	0	0
t	0	0	0	0	0	22.7337	31.9738	7.6011	11.3255	23.0192	34.2138	39.7053	39.7132	0	0	0
M01679_2.00_shift5 (M01679_2.00) 
; positions_6nt_m1 versus M01679_2.00; m=33/96; ncol2=8; w=0; offset=0; strand=D; shift=5; score=0.565716; -----WWAwAwAT---
; cor=; Ncor=
a	0	0	0	0	0	72.3485	72.1698	75.621	64.8218	86.4201	32.4244	89.1199	6.27341	0	0	0
c	0	0	0	0	0	0.0344353	0.0277469	0.0269978	0.0269978	0.0269978	0.0269978	0.0269978	0.031211	0	0	0
g	0	0	0	0	0	0.0344353	0.0277469	0.0269978	0.0269978	0.0269978	0.0269978	0.0269978	0.031211	0	0	0
t	0	0	0	0	0	27.5826	27.7747	24.3251	35.1242	13.5259	67.5216	10.8261	93.6642	0	0	0
M00693_2.00_rc_shift3 (nhr-65_rc) 
; positions_6nt_m1 versus M00693_2.00_rc (nhr-65_rc); m=34/96; ncol2=12; w=-2; offset=-2; strand=R; shift=3; score=0.564112; ---gracACAAAtww-
; cor=; Ncor=
a	0	0	0	20.3459	38.9657	54.1405	16.4857	99.9502	8.94392	91.0229	72.5384	85.9879	17.1432	31.6263	29.4382	0
c	0	0	0	20.3459	17.2656	12.1602	65.7074	0.0166049	70.0136	0.0166049	18.633	4.67071	7.75104	21.6517	20.5109	0
g	0	0	0	38.9623	26.5032	12.1602	4.50575	0.0166049	0.0166049	0.0166049	0.0166049	4.67071	7.75104	12.8564	20.5109	0
t	0	0	0	20.3459	17.2656	21.5391	13.3011	0.0166049	21.0258	8.94392	8.81195	4.67071	67.3547	33.8656	29.5401	0
M02745_2.00_shift3 (mef-2) 
; positions_6nt_m1 versus M02745_2.00 (mef-2); m=35/96; ncol2=12; w=-2; offset=-2; strand=D; shift=3; score=0.563357; ---TaCTAwAAATAG-
; cor=; Ncor=
a	0	0	0	2.00391	61.8663	0.100301	0.100301	99.5994	62.6062	97.5478	96.6942	99.7492	0	99.6493	0.447761	0
c	0	0	0	0.342131	0.870918	99.7492	0.0501505	0.0500751	0.125905	0	0.194458	0.0501505	0.0501505	0.250501	0.149254	0
g	0	0	0	0.439883	12.4106	0.100301	0.100301	0.2003	0.283286	0.147131	0.0486145	0.150451	0.200602	0.0501002	98.9552	0
t	0	0	0	97.2141	24.8523	0.0501505	99.7492	0.150225	36.9846	2.30505	3.06271	0.0501505	99.7492	0.0501002	0.447761	0
M07295_2.00_shift4 (lin-54) 
; positions_6nt_m1 versus M07295_2.00 (lin-54); m=36/96; ncol2=15; w=-1; offset=-1; strand=D; shift=4; score=0.561745; ----WTwaAAwATTyA
; cor=; Ncor=
a	0	0	0	0	26.2982	24.1206	39.6985	60.9715	77.5544	93.6348	56.2814	82.0771	0	0	0	86.2647
c	0	0	0	0	2.0101	3.3501	18.7605	8.2077	10.8878	0	2.1776	0	0	0	32.4958	0
g	0	0	0	0	3.1826	1.34	2.6801	7.5377	3.0151	5.0251	16.0804	2.6801	0	0	0	13.7353
t	0	0	0	0	68.5092	71.1893	38.861	23.2831	8.5427	1.34	25.4606	15.2429	100	100	67.5042	0
M01107_2.00_shift5 (M01107_2.00) 
; positions_6nt_m1 versus M01107_2.00; m=37/96; ncol2=8; w=0; offset=0; strand=D; shift=5; score=0.553614; -----aAawwAww---
; cor=; Ncor=
a	0	0	0	0	0	62.5139	68.9816	66.0471	52.4467	52.5023	76.1535	59.0061	34.2342	0	0	0
c	0	0	0	0	0	1.48496	7.95531	3.00527	2.77263	3.1609	4.77193	5.04118	2.78215	0	0	0
g	0	0	0	0	0	17.9105	10.9555	6.89205	3.5247	3.03696	4.44932	4.21075	4.82217	0	0	0
t	0	0	0	0	0	18.0905	12.1077	24.0556	41.256	41.2998	14.6253	31.742	58.1615	0	0	0
M01685_2.00_shift5 (M01685_2.00) 
; positions_6nt_m1 versus M01685_2.00; m=38/96; ncol2=8; w=0; offset=0; strand=D; shift=5; score=0.55177; -----mrrdwWww---
; cor=; Ncor=
a	0	0	0	0	0	29.5752	25.6034	36.9207	33.4398	40.8108	71.6329	60.4747	27.0214	0	0	0
c	0	0	0	0	0	28.9896	24.8467	13.996	13.3264	8.15758	0.214715	0.0299635	13.5533	0	0	0
g	0	0	0	0	0	22.5771	26.3831	27.3515	25.0218	17.6185	0.170598	13.9047	7.66473	0	0	0
t	0	0	0	0	0	18.858	23.1669	21.7317	28.212	33.4131	27.9818	25.5906	51.7606	0	0	0
M09390_2.00_shift6 (sox-2,sox-3,sox-4) 
; positions_6nt_m1 versus M09390_2.00 (sox-2,sox-3,sox-4); m=39/96; ncol2=8; w=0; offset=1; strand=D; shift=6; score=0.551338; ------wAACAATr--
; cor=; Ncor=
a	0	0	0	0	0	0	33.5297	88.0865	93.6035	2.26177	97.7382	90.0852	6.78532	39.665	0	0
c	0	0	0	0	0	0	13.0836	2.13612	0	89.9595	0	6.52219	5.78009	16.0109	0	0
g	0	0	0	0	0	0	15.6085	4.26041	5.26565	3.39266	1.13089	3.39266	0	31.2032	0	0
t	0	0	0	0	0	0	37.7783	5.51695	1.13089	4.38607	1.13089	0	87.4346	13.1209	0	0
M09404_2.00_shift6 (sox-2,sox-3,sox-4) 
; positions_6nt_m1 versus M09404_2.00 (sox-2,sox-3,sox-4); m=40/96; ncol2=8; w=0; offset=1; strand=D; shift=6; score=0.551338; ------wAACAATr--
; cor=; Ncor=
a	0	0	0	0	0	0	33.5297	88.0865	93.6035	2.26177	97.7382	90.0852	6.78532	39.665	0	0
c	0	0	0	0	0	0	13.0836	2.13612	0	89.9595	0	6.52219	5.78009	16.0109	0	0
g	0	0	0	0	0	0	15.6085	4.26041	5.26565	3.39266	1.13089	3.39266	0	31.2032	0	0
t	0	0	0	0	0	0	37.7783	5.51695	1.13089	4.38607	1.13089	0	87.4346	13.1209	0	0
M01688_2.00_shift6 (M01688_2.00) 
; positions_6nt_m1 versus M01688_2.00; m=41/96; ncol2=8; w=0; offset=1; strand=D; shift=6; score=0.548728; ------awwwAwww--
; cor=; Ncor=
a	0	0	0	0	0	0	41.2581	38.386	41.1062	44.2483	80.5888	50.8656	34.0689	31.0543	0	0
c	0	0	0	0	0	0	18.1714	15.1453	4.28945	11.5862	0.182567	0.117559	7.60179	19.409	0	0
g	0	0	0	0	0	0	20.4881	18.3145	19.224	5.3112	7.76293	6.95309	6.47782	14.5231	0	0
t	0	0	0	0	0	0	20.0825	28.1541	35.3804	38.8542	11.4657	42.0638	51.8515	35.0136	0	0
M09102_2.00_shift6 (fkh-2) 
; positions_6nt_m1 versus M09102_2.00 (fkh-2); m=42/96; ncol2=13; w=0; offset=1; strand=D; shift=6; score=0.547056; ------wAAmmATAAA
; cor=; Ncor=
a	0	0	0	0	0	0	43.2642	96.7191	91.8097	63.0299	45.6508	92.8887	14.4831	81.5473	100	99.8926
c	0	0	0	0	0	0	13.8458	1.68075	2.91214	32.5679	43.021	0	3.69269	17.5693	0	0
g	0	0	0	0	0	0	7.03788	1.01355	0	0	0	7.11126	0	0	0	0
t	0	0	0	0	0	0	35.8521	0.586565	5.27816	4.40217	11.3282	0	81.8242	0.883421	0	0.107382
M09098_2.00_shift6 (fkh-2) 
; positions_6nt_m1 versus M09098_2.00 (fkh-2); m=43/96; ncol2=13; w=0; offset=1; strand=D; shift=6; score=0.547056; ------wAAmmATAAA
; cor=; Ncor=
a	0	0	0	0	0	0	43.2642	96.7191	91.8097	63.0299	45.6508	92.8887	14.4831	81.5473	100	99.8926
c	0	0	0	0	0	0	13.8458	1.68075	2.91214	32.5679	43.021	0	3.69269	17.5693	0	0
g	0	0	0	0	0	0	7.03788	1.01355	0	0	0	7.11126	0	0	0	0
t	0	0	0	0	0	0	35.8521	0.586565	5.27816	4.40217	11.3282	0	81.8242	0.883421	0	0.107382
M00829_2.00_shift6 (sox-2,sox-3,sox-4) 
; positions_6nt_m1 versus M00829_2.00 (sox-2,sox-3,sox-4); m=44/96; ncol2=8; w=0; offset=1; strand=D; shift=6; score=0.546673; ------wAACAATr--
; cor=; Ncor=
a	0	0	0	0	0	0	26.087	80.6452	91.4286	2.85714	91.4286	91.4286	2.85714	32	0	0
c	0	0	0	0	0	0	17.3913	3.22581	2.85714	88.5714	2.85714	2.85714	2.85714	12	0	0
g	0	0	0	0	0	0	13.0435	3.22581	2.85714	2.85714	2.85714	2.85714	2.85714	36	0	0
t	0	0	0	0	0	0	43.4783	12.9032	2.85714	5.71429	2.85714	2.85714	91.4286	20	0	0
M06203_2.00_shift1 (fkh-7) 
; positions_6nt_m1 versus M06203_2.00 (fkh-7); m=45/96; ncol2=15; w=-4; offset=-4; strand=D; shift=1; score=0.541799; -mmmmarAAAAAAwsm
; cor=; Ncor=
a	0	33.7066	33.6656	32.2296	31.5673	42.1634	49.3377	96.0265	99.5585	100	99.117	100	98.6755	44.9227	12.792	29.2035
c	0	27.8835	32.2259	26.4901	27.8146	21.0817	5.96026	0	0	0	0	0	0.993377	7.28477	37.3749	38.4324
g	0	24.86	19.0476	20.9713	20.3091	15.011	31.7881	0.993377	0	0	0.883002	0	0.331126	3.31126	34.2603	15.4235
t	0	13.5498	15.0609	20.3091	20.3091	21.7439	12.9139	2.98013	0.441501	0	0	0	0	44.4812	15.5729	16.9406
M00212_2.00_shift6 (sox-2,sox-3,sox-4) 
; positions_6nt_m1 versus M00212_2.00 (sox-2,sox-3,sox-4); m=46/96; ncol2=8; w=0; offset=1; strand=D; shift=6; score=0.537689; ------rAACAATw--
; cor=; Ncor=
a	0	0	0	0	0	0	25	91.4452	99.7699	0.0766871	99.7699	99.7699	0.0766871	55.4204	0	0
c	0	0	0	0	0	0	0.124378	0.0830565	0.0766871	99.7699	0.0766871	0.0766871	0.0766871	0.110619	0	0
g	0	0	0	0	0	0	62.3134	8.3887	0.0766871	0.0766871	0.0766871	0.0766871	0.0766871	0.110619	0	0
t	0	0	0	0	0	0	12.5622	0.0830565	0.0766871	0.0766871	0.0766871	0.0766871	99.7699	44.3584	0	0
M01517_2.00_shift5 (M01517_2.00) 
; positions_6nt_m1 versus M01517_2.00; m=47/96; ncol2=8; w=0; offset=0; strand=D; shift=5; score=0.534723; -----wawwwAww---
; cor=; Ncor=
a	0	0	0	0	0	34.0141	40.2816	39.9077	33.2385	55.6169	80.1022	51.6361	29.702	0	0	0
c	0	0	0	0	0	17.7569	18.8384	14.6812	10.5245	0.0482426	0.0213501	0.0220205	7.4724	0	0	0
g	0	0	0	0	0	21.4725	22.7803	20.2179	16.8392	10.2624	1.08687	0.196758	6.49619	0	0	0
t	0	0	0	0	0	26.7564	18.0997	25.1931	39.3978	34.0724	18.7896	48.1452	56.3294	0	0	0
M01692_2.00_shift5 (M01692_2.00) 
; positions_6nt_m1 versus M01692_2.00; m=48/96; ncol2=8; w=0; offset=0; strand=D; shift=5; score=0.534651; -----mdrawaRt---
; cor=; Ncor=
a	0	0	0	0	0	31.8198	25.6386	32.2138	33.0083	35.3662	54.031	70.8523	21.6909	0	0	0
c	0	0	0	0	0	26.3137	20.168	19.5387	19.0441	15.5764	7.23955	0.00976059	22.8031	0	0	0
g	0	0	0	0	0	21.979	26.4194	25.0882	23.4943	21.2373	15.6357	29.0959	10.0432	0	0	0
t	0	0	0	0	0	19.8875	27.774	23.1593	24.4532	27.8201	23.0937	0.0420287	45.4628	0	0	0
M00750_2.00_shift5 (M00750_2.00) 
; positions_6nt_m1 versus M00750_2.00; m=49/96; ncol2=8; w=0; offset=0; strand=D; shift=5; score=0.531032; -----AAAwAaAt---
; cor=; Ncor=
a	0	0	0	0	0	75	80	73.3333	26.6667	73.3333	66.6667	69.2308	16.6667	0	0	0
c	0	0	0	0	0	8.33333	6.66667	6.66667	6.66667	6.66667	6.66667	7.69231	8.33333	0	0	0
g	0	0	0	0	0	8.33333	6.66667	6.66667	6.66667	6.66667	6.66667	7.69231	8.33333	0	0	0
t	0	0	0	0	0	8.33333	6.66667	13.3333	60	13.3333	20	15.3846	66.6667	0	0	0
M00203_2.00_rc_shift5 (sox-2,sox-3,sox-4_rc) 
; positions_6nt_m1 versus M00203_2.00_rc (sox-2,sox-3,sox-4_rc); m=50/96; ncol2=8; w=0; offset=0; strand=R; shift=5; score=0.529459; -----rrrAcAAT---
; cor=; Ncor=
a	0	0	0	0	0	32.506	26.7073	47.1419	84.5992	4.87858	95.8464	84.7024	15.0993	0	0	0
c	0	0	0	0	0	17.6621	16.6921	13.9177	3.41414	67.6843	0.0489354	3.66616	7.49807	0	0	0
g	0	0	0	0	0	28.2593	34.2928	27.1985	3.58919	11.0768	0.534057	10.2692	6.26292	0	0	0
t	0	0	0	0	0	21.5726	22.3078	11.7419	8.39743	16.3603	3.57065	1.36226	71.1397	0	0	0
M00206_2.00_shift5 (sox-2,sox-3,sox-4) 
; positions_6nt_m1 versus M00206_2.00 (sox-2,sox-3,sox-4); m=51/96; ncol2=8; w=0; offset=0; strand=D; shift=5; score=0.529371; -----araAcAAT---
; cor=; Ncor=
a	0	0	0	0	0	32.9744	31.5975	38.7559	69.6768	4.65359	99.7612	90.2273	22.1148	0	0	0
c	0	0	0	0	0	19.604	16.1687	18.491	5.8936	50.7869	0.129093	5.43213	3.54751	0	0	0
g	0	0	0	0	0	24.185	28.5906	21.4834	5.44048	19.8388	0.0814944	4.31601	3.08406	0	0	0
t	0	0	0	0	0	23.2367	23.6432	21.2697	18.9891	24.7207	0.0282342	0.0245347	71.2537	0	0	0
M07298_2.00_shift4 (lin-54) 
; positions_6nt_m1 versus M07298_2.00 (lin-54); m=52/96; ncol2=15; w=-1; offset=-1; strand=D; shift=4; score=0.52881; ----wTwwAAAATTYA
; cor=; Ncor=
a	0	0	0	0	32	15.8333	27.8333	36.5	73.5	90.5	77.6667	80.6667	0	0	0	80.3333
c	0	0	0	0	2.8333	2.6667	6.1667	11.5	9	0	0.5	0	0	0	28.1667	0
g	0	0	0	0	4.5	1	1.1667	7.6667	11.6667	7.1667	11	3.8333	0	0	0	19.6667
t	0	0	0	0	60.6667	80.5	64.8333	44.3333	5.8333	2.3333	10.8333	15.5	100	100	71.8333	0
M00197_2.00_shift5 (sox-2,sox-3,sox-4) 
; positions_6nt_m1 versus M00197_2.00 (sox-2,sox-3,sox-4); m=53/96; ncol2=8; w=0; offset=0; strand=D; shift=5; score=0.527887; -----rrawcAAT---
; cor=; Ncor=
a	0	0	0	0	0	31.2219	31.5226	42.5231	60.2919	5.82109	97.1833	89.0196	18.0233	0	0	0
c	0	0	0	0	0	20.108	16.1304	16.6107	4.30251	50.4755	1.64312	3.12319	5.21565	0	0	0
g	0	0	0	0	0	25.3079	28.5228	21.7594	2.97189	24.569	0.0386425	7.837	4.40026	0	0	0
t	0	0	0	0	0	23.3622	23.8242	19.1068	32.4337	19.1344	1.13496	0.0202188	72.3608	0	0	0
M00209_2.00_shift5 (sox-2,sox-3,sox-4) 
; positions_6nt_m1 versus M00209_2.00 (sox-2,sox-3,sox-4); m=54/96; ncol2=8; w=0; offset=0; strand=D; shift=5; score=0.52492; -----araAcAAT---
; cor=; Ncor=
a	0	0	0	0	0	29.8569	31.925	35.7639	67.9599	5.68531	93.1608	86.9014	18.3811	0	0	0
c	0	0	0	0	0	21.2512	17.5208	19.239	5.52298	55.5835	1.19045	2.62419	5.99739	0	0	0
g	0	0	0	0	0	24.6904	26.666	23.7347	5.63455	18.6881	0.0957828	8.1236	4.71771	0	0	0
t	0	0	0	0	0	24.2015	23.8883	21.2624	20.8826	20.0431	5.55294	2.35084	70.9038	0	0	0
M00204_2.00_shift5 (sox-2,sox-3,sox-4) 
; positions_6nt_m1 versus M00204_2.00 (sox-2,sox-3,sox-4); m=55/96; ncol2=8; w=0; offset=0; strand=D; shift=5; score=0.524412; -----arawcAAT---
; cor=; Ncor=
a	0	0	0	0	0	30.4046	31.6486	34.7135	59.5861	7.84313	88.3669	90.2298	18.2652	0	0	0
c	0	0	0	0	0	20.7925	18.2597	19.436	7.2967	50.3822	2.53831	3.19747	6.32809	0	0	0
g	0	0	0	0	0	24.1575	26.1721	22.5814	6.34345	22.8657	0.0562189	5.48688	4.24185	0	0	0
t	0	0	0	0	0	24.6455	23.9195	23.2691	26.7738	18.909	9.03854	1.08585	71.1648	0	0	0
M07299_2.00_shift3 (lin-54) 
; positions_6nt_m1 versus M07299_2.00 (lin-54); m=56/96; ncol2=15; w=-2; offset=-2; strand=D; shift=3; score=0.518973; ---wwwTwaAAATTYA
; cor=; Ncor=
a	0	0	0	51.5152	36.7424	26.8939	20.4545	32.5758	60.6061	86.3636	87.8788	92.4242	0	0	0	81.0606
c	0	0	0	5.6818	3.4091	4.1667	2.2727	14.3939	9.8485	0	0.3788	0	3.0303	0	26.1364	0
g	0	0	0	10.6061	10.6061	3.0303	3.4091	5.6818	15.5303	13.2576	6.0606	0	1.1364	0	0	17.0455
t	0	0	0	32.197	49.2424	65.9091	73.8636	47.3485	14.0152	0.3788	5.6818	7.5758	95.8333	100	73.8636	1.8939
M01677_2.00_shift5 (M01677_2.00) 
; positions_6nt_m1 versus M01677_2.00; m=57/96; ncol2=8; w=0; offset=0; strand=D; shift=5; score=0.517901; -----mkrawaRh---
; cor=; Ncor=
a	0	0	0	0	0	37.7279	24.75	34.3177	34.0293	34.6936	57.6007	73.2846	25.3553	0	0	0
c	0	0	0	0	0	27.1235	20.2636	17.7371	17.7648	15.4337	3.33187	0.000129006	25.8675	0	0	0
g	0	0	0	0	0	19.4997	27.0808	25.1702	24.4645	21.4679	17.8773	26.6916	6.12874	0	0	0
t	0	0	0	0	0	15.6489	27.9056	22.7749	23.7414	28.4048	21.1901	0.0236203	42.6484	0	0	0
M01691_2.00_shift6 (athp-3) 
; positions_6nt_m1 versus M01691_2.00 (athp-3); m=58/96; ncol2=7; w=0; offset=1; strand=D; shift=6; score=0.516459; ------mrwwwat---
; cor=; Ncor=
a	0	0	0	0	0	0	27.2989	31.1542	40.9498	46.4798	58.2238	57.604	23.5345	0	0	0
c	0	0	0	0	0	0	27.5733	19.0859	10.6158	9.57368	12.8622	0.0723378	21.2949	0	0	0
g	0	0	0	0	0	0	24.7011	25.2531	18.3999	15.4718	1.41099	22.9563	4.84751	0	0	0
t	0	0	0	0	0	0	20.4268	24.5068	30.0345	28.4747	27.503	19.3674	50.3232	0	0	0
M10935_2.00_shift3 (mef-2) 
; positions_6nt_m1 versus M10935_2.00 (mef-2); m=59/96; ncol2=16; w=-2; offset=-2; strand=D; shift=3; score=0.515156; ---cTCTAAAAATAAC
; cor=; Ncor=
a	0	0	0	0	0	0	0	100	100	100	100	100	0	100	100	0
c	0	0	0	60	0	80	0	0	0	0	0	0	0	0	0	100
g	0	0	0	20	20	0	0	0	0	0	0	0	0	0	0	0
t	0	0	0	20	80	20	100	0	0	0	0	0	100	0	0	0
M02945_2.00_rc_shift6 (M02945_2.00_rc) 
; positions_6nt_m1 versus M02945_2.00_rc; m=60/96; ncol2=14; w=0; offset=1; strand=R; shift=6; score=0.515115; ------aaAAAATCrA
; cor=; Ncor=
a	0	0	0	0	0	0	46.6941	63.3388	78.6546	80.1476	97.0626	99.0712	0.513726	0.37637	64.6375	99.3951
c	0	0	0	0	0	0	16.8092	6.23355	3.54463	2.28052	0.446999	0.081473	1.65356	99.4927	0.327279	0.0980873
g	0	0	0	0	0	0	22.8289	18.7664	6.44243	1.4764	1.62835	0.668079	0.224755	0.0490918	34.8552	0.147131
t	0	0	0	0	0	0	13.6678	11.6612	11.3583	16.0954	0.862069	0.179241	97.608	0.0818197	0.180003	0.359653
M01226_2.00_shift7 (M01226_2.00) 
; positions_6nt_m1 versus M01226_2.00; m=61/96; ncol2=8; w=0; offset=2; strand=D; shift=7; score=0.514802; -------aAwAACAw-
; cor=; Ncor=
a	0	0	0	0	0	0	0	52.7071	80.9169	65.5996	98.3916	99.9532	4.70019	96.8301	57.4675	0
c	0	0	0	0	0	0	0	23.6374	1.60216	9.38476	1.57714	0.0156152	78.0918	0.0156152	7.51748	0
g	0	0	0	0	0	0	0	23.6374	0.0158629	0.0156152	0.0156152	0.0156152	0.0156152	0.0156152	7.51748	0
t	0	0	0	0	0	0	0	0.0181686	17.4651	25	0.0156152	0.0156152	17.1924	3.13866	27.4975	0
M00607_2.00_shift5 (hpo-39) 
; positions_6nt_m1 versus M00607_2.00 (hpo-39); m=62/96; ncol2=8; w=0; offset=0; strand=D; shift=5; score=0.512513; -----AwATWAAT---
; cor=; Ncor=
a	0	0	0	0	0	87.3441	66.5973	92.2043	11.5591	73.0031	92.2043	87.396	15.8088	0	0	0
c	0	0	0	0	0	6.29676	0.0415973	0.0384025	0.0384025	0.0384025	0.0384025	0.0415973	0.052521	0	0	0
g	0	0	0	0	0	0.0623441	4.20133	0.0384025	0.0384025	0.0384025	0.0384025	0.0415973	0.052521	0	0	0
t	0	0	0	0	0	6.29676	29.1597	7.71889	88.3641	26.9201	7.71889	12.5208	84.0861	0	0	0
M03735_2.00_shift6 (M03735_2.00) 
; positions_6nt_m1 versus M03735_2.00; m=63/96; ncol2=13; w=0; offset=1; strand=D; shift=6; score=0.503934; ------wwAsAATAAy
; cor=; Ncor=
a	0	0	0	0	0	0	48.8673	63.2653	98.4127	10.3718	91.9881	97.4843	6.12245	99.359	96.5732	0
c	0	0	0	0	0	0	20.0647	0.816327	0	60.6654	1.48368	0.628931	3.49854	0	0	49.0323
g	0	0	0	0	0	0	1.94175	0	1.5873	26.8102	4.74777	1.88679	0	0.641026	1.55763	0
t	0	0	0	0	0	0	29.1262	35.9184	0	2.15264	1.78042	0	90.379	0	1.86916	50.9677
M01105_2.00_shift4 (M01105_2.00) 
; positions_6nt_m1 versus M01105_2.00; m=64/96; ncol2=9; w=-1; offset=-1; strand=D; shift=4; score=0.501984; ----waarwwwww---
; cor=; Ncor=
a	0	0	0	0	37.434	33.1918	36.7239	39.8201	30.6146	57.2249	60.2371	50.597	33.1768	0	0	0
c	0	0	0	0	17.3324	23.625	21.1878	10.6374	17.3133	0.213737	9.28396	4.82539	9.60085	0	0	0
g	0	0	0	0	18.5892	21.5916	19.3642	25.3904	15.0515	14.9841	4.47402	5.95298	10.6106	0	0	0
t	0	0	0	0	26.6444	21.5916	22.7241	24.1521	37.0206	27.5772	26.005	38.6247	46.6117	0	0	0
M02719_2.00_shift6 (sox-2,sox-3,sox-4) 
; positions_6nt_m1 versus M02719_2.00 (sox-2,sox-3,sox-4); m=65/96; ncol2=7; w=0; offset=1; strand=D; shift=6; score=0.493456; ------wAACAAT---
; cor=; Ncor=
a	0	0	0	0	0	0	34.7826	91.3043	95.6522	0	100	95.6522	0	0	0	0
c	0	0	0	0	0	0	17.3913	0	0	95.6522	0	4.34783	0	0	0	0
g	0	0	0	0	0	0	13.0435	4.34783	4.34783	0	0	0	0	0	0	0
t	0	0	0	0	0	0	34.7826	4.34783	0	4.34783	0	0	100	0	0	0
M02942_2.00_rc_shift6 (M02942_2.00_rc) 
; positions_6nt_m1 versus M02942_2.00_rc; m=66/96; ncol2=14; w=0; offset=1; strand=R; shift=6; score=0.490334; ------aaaAAATCrA
; cor=; Ncor=
a	0	0	0	0	0	0	43.2296	57.3412	67.6722	74.0118	94.2155	98.9596	0.332917	0.251151	37.3016	98.9596
c	0	0	0	0	0	0	18.7132	8.07741	7.22823	4.8864	0.475436	0.0416146	0.332917	99.5396	0.668338	0.0832293
g	0	0	0	0	0	0	22.6661	21.666	10.6716	2.58326	4.51664	0.749064	0.374532	0	62.0301	0.0416146
t	0	0	0	0	0	0	15.3911	12.9154	14.428	18.5185	0.792393	0.249688	98.9596	0.209293	0	0.915522
M02943_2.00_rc_shift6 (M02943_2.00_rc) 
; positions_6nt_m1 versus M02943_2.00_rc; m=67/96; ncol2=14; w=0; offset=1; strand=R; shift=6; score=0.486149; ------aaaAAATCrA
; cor=; Ncor=
a	0	0	0	0	0	0	43.0324	52.2256	66.4985	72.4441	94.6952	99.3842	0.151191	0.226757	46.9267	99.5594
c	0	0	0	0	0	0	17.3875	9.01619	6.92903	4.28728	0.287391	0.125676	0.125992	99.6221	0.164079	0.0881279
g	0	0	0	0	0	0	24.4815	23.6975	10.8308	2.51924	4.69405	0.301621	0.0881945	0.113379	52.884	0.0251794
t	0	0	0	0	0	0	15.0986	15.0607	15.7417	20.7494	0.323315	0.188513	99.6346	0.0377929	0.025243	0.327332
M02944_2.00_rc_shift6 (M02944_2.00_rc) 
; positions_6nt_m1 versus M02944_2.00_rc; m=68/96; ncol2=14; w=0; offset=1; strand=R; shift=6; score=0.482359; ------aaaAAATCrA
; cor=; Ncor=
a	0	0	0	0	0	0	38.7567	52.1882	64.8704	75.3566	95.3981	99.9343	0	0	37.0039	99.8687
c	0	0	0	0	0	0	23.4328	10.3562	8.00648	4.82369	0	0.0131354	0.0262605	99.9343	0	0
g	0	0	0	0	0	0	22.0397	22.434	12.986	1.28764	4.5768	0.0394063	0.0787815	0	62.9698	0
t	0	0	0	0	0	0	15.7708	15.0217	14.1371	18.5321	0.0250784	0.0131354	99.895	0.0656771	0.0262812	0.131268
M00008_2.00_shift7 (M00008_2.00) 
; positions_6nt_m1 versus M00008_2.00; m=69/96; ncol2=7; w=0; offset=2; strand=D; shift=7; score=0.480756; -------awwaaww--
; cor=; Ncor=
a	0	0	0	0	0	0	0	28.2959	31.6659	37.7778	61.6393	67.5764	32.6032	32.1153	0	0
c	0	0	0	0	0	0	0	24.8465	18.4532	11.2652	6.89847	4.27703	13.3887	13.7266	0	0
g	0	0	0	0	0	0	0	24.5993	23.6944	20.9413	11.1484	6.31709	8.20227	11.2384	0	0
t	0	0	0	0	0	0	0	22.2583	26.1864	30.0157	20.3138	21.8294	45.8058	42.9198	0	0
M01686_2.00_shift4 (M01686_2.00) 
; positions_6nt_m1 versus M01686_2.00; m=70/96; ncol2=9; w=-1; offset=-1; strand=D; shift=4; score=0.476664; ----wwawwwAww---
; cor=; Ncor=
a	0	0	0	0	35.3239	29.1909	47.9754	35.3839	43.2302	38.9749	86.2322	51.9591	36.5816	0	0	0
c	0	0	0	0	18.4407	20.986	15.3435	15.7408	7.07479	10.0033	0.0496401	3.38873	9.29563	0	0	0
g	0	0	0	0	20.585	17.8831	20.7115	19.6143	19.2313	6.1899	8.47435	8.76228	8.08123	0	0	0
t	0	0	0	0	25.6504	31.9399	15.9696	29.261	30.4638	44.8318	5.24379	35.8899	46.0416	0	0	0
M02717_2.00_shift4 (sox-2,sox-3,sox-4) 
; positions_6nt_m1 versus M02717_2.00 (sox-2,sox-3,sox-4); m=71/96; ncol2=9; w=-1; offset=-1; strand=D; shift=4; score=0.476553; ----kwwaACAAw---
; cor=; Ncor=
a	0	0	0	0	17.8571	28.5714	53.5714	64.2857	89.2857	0	100	96.4286	25	0	0	0
c	0	0	0	0	17.8571	10.7143	0	10.7143	0	92.8571	0	0	0	0	0	0
g	0	0	0	0	35.7143	14.2857	10.7143	10.7143	0	0	0	3.57143	7.14286	0	0	0
t	0	0	0	0	28.5714	46.4286	35.7143	14.2857	10.7143	7.14286	0	0	67.8571	0	0	0
M00828_2.00_rc_shift4 (sox-2,sox-3,sox-4_rc) 
; positions_6nt_m1 versus M00828_2.00_rc (sox-2,sox-3,sox-4_rc); m=72/96; ncol2=9; w=-1; offset=-1; strand=R; shift=4; score=0.476214; ----bawaACAAt---
; cor=; Ncor=
a	0	0	0	0	22.932	30.6651	31.7338	47.8087	73.8615	3.64576	80.4595	75.1248	18.6787	0	0	0
c	0	0	0	0	26.378	22.2674	16.2384	14.6906	5.06418	69.6557	5.1436	6.22859	8.73542	0	0	0
g	0	0	0	0	25.5984	22.9455	24.7143	22.8102	6.31035	9.52162	5.91655	12.418	6.73546	0	0	0
t	0	0	0	0	25.0916	24.122	27.3135	14.6906	14.764	17.1769	8.48037	6.22859	65.8504	0	0	0
M00208_2.00_rc_shift4 (sox-2,sox-3,sox-4_rc) 
; positions_6nt_m1 versus M00208_2.00_rc (sox-2,sox-3,sox-4_rc); m=73/96; ncol2=9; w=-1; offset=-1; strand=R; shift=4; score=0.475817; ----varaacAAt---
; cor=; Ncor=
a	0	0	0	0	25.2444	29.7331	31.449	34.8399	60.3397	7.68003	87.0814	82.9432	22.913	0	0	0
c	0	0	0	0	25.2444	21.8077	18.1445	20.507	7.76783	47.8765	2.08933	5.51877	8.01813	0	0	0
g	0	0	0	0	25.4981	24.8352	27.3404	22.4382	7.8459	20.6688	3.0859	8.74215	8.01813	0	0	0
t	0	0	0	0	24.0132	23.624	23.0661	22.2149	24.0465	23.7747	7.74342	2.7959	61.0507	0	0	0
M00826_2.00_shift4 (sox-2,sox-3,sox-4) 
; positions_6nt_m1 versus M00826_2.00 (sox-2,sox-3,sox-4); m=74/96; ncol2=9; w=-1; offset=-1; strand=D; shift=4; score=0.474506; ----kwdawcAAt---
; cor=; Ncor=
a	0	0	0	0	23.0159	31.9141	28.4237	44.9142	55.0439	5.56972	79.5184	73.9025	15.9169	0	0	0
c	0	0	0	0	21.0349	20.3493	18.3059	17.0262	5.09434	54.4534	6.93089	11.2768	12.2728	0	0	0
g	0	0	0	0	28.3942	21.6076	26.7684	18.0791	6.80822	21.4848	4.73977	11.3901	5.29828	0	0	0
t	0	0	0	0	27.555	26.129	26.5021	19.9805	33.0536	18.4921	8.81089	3.43064	66.512	0	0	0
M00639_2.00_rc_shift3 (C46E10.8_rc) 
; positions_6nt_m1 versus M00639_2.00_rc (C46E10.8_rc); m=75/96; ncol2=10; w=-2; offset=-2; strand=R; shift=3; score=0.472622; ---GgkyadrAaw---
; cor=; Ncor=
a	0	0	0	14.9161	12.826	16.9301	19.6316	45.4968	25.6448	44.2381	74.5743	66.9747	27.222	0	0	0
c	0	0	0	6.70225	11.49	22.4007	31.0979	23.5151	8.97408	6.81814	5.5389	4.592	2.12554	0	0	0
g	0	0	0	70.2769	61.6501	32.7562	5.14045	22.593	27.5043	29.6537	10.0925	5.2295	5.02299	0	0	0
t	0	0	0	8.10469	14.0339	27.913	44.13	8.39505	37.8769	19.29	9.79426	23.2038	65.6295	0	0	0
M06325_2.00_rc_shift10 (alr-1,ceh-1,ceh-10,ceh-12,ceh-13,ceh-14,ceh-16,ceh-17,ceh-2,ceh-43,ceh-8,dsc-1,lim-6,lin-11,mec-3,tab-1,ttx-3,unc-4,unc-42,vab-15_rc) 
; positions_6nt_m1 versus M06325_2.00_rc (alr-1,ceh-1,ceh-10,ceh-12,ceh-13,ceh-14,ceh-16,ceh-17,ceh-2,ceh-43,ceh-8,dsc-1,lim-6,lin-11,mec-3,tab-1,ttx-3,unc-4,unc-42,vab-15_rc); m=76/96; ncol2=6; w=0; offset=5; strand=R; shift=10; score=0.471239; ----------AATTAd
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	0	0	88.2353	94.1176	0	11.7647	94.1176	41.1765
c	0	0	0	0	0	0	0	0	0	0	5.88235	0	5.88235	0	0	0
g	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	29.4118
t	0	0	0	0	0	0	0	0	0	0	5.88235	5.88235	94.1176	88.2353	5.88235	29.4118
M06525_2.00_rc_shift9 (alr-1,ceh-1,ceh-10,ceh-12,ceh-13,ceh-14,ceh-16,ceh-17,ceh-2,ceh-43,ceh-8,dsc-1,lim-6,lin-11,mec-3,tab-1,ttx-3,unc-4,unc-42,vab-15_rc) 
; positions_6nt_m1 versus M06525_2.00_rc (alr-1,ceh-1,ceh-10,ceh-12,ceh-13,ceh-14,ceh-16,ceh-17,ceh-2,ceh-43,ceh-8,dsc-1,lim-6,lin-11,mec-3,tab-1,ttx-3,unc-4,unc-42,vab-15_rc); m=77/96; ncol2=7; w=0; offset=4; strand=R; shift=9; score=0.463925; ---------tAATTAr
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	0	23.5294	88.2353	100	0	5.88235	100	41.1765
c	0	0	0	0	0	0	0	0	0	23.5294	5.88235	0	0	0	0	0
g	0	0	0	0	0	0	0	0	0	5.88235	0	0	0	0	0	35.2941
t	0	0	0	0	0	0	0	0	0	47.0588	5.88235	0	100	94.1176	0	23.5294
M03046_2.00_shift4 (fkh-2) 
; positions_6nt_m1 versus M03046_2.00 (fkh-2); m=78/96; ncol2=8; w=-1; offset=-1; strand=D; shift=4; score=0.460672; ----rTAAAcAA----
; cor=; Ncor=
a	0	0	0	0	45.3438	12.9527	91.046	92.2151	90.047	23.4165	99.3945	70.5774	0	0	0	0
c	0	0	0	0	0	4.91099	3.56577	0.963082	0	55.1344	0	9.09091	0	0	0	0
g	0	0	0	0	54.6562	11.6022	3.09033	2.16693	4.62382	14.3954	0.605536	7.55528	0	0	0	0
t	0	0	0	0	0	70.5341	2.29794	4.6549	5.32915	7.05374	0	12.7764	0	0	0	0
M00501_2.00_rc_shift9 (alr-1,ceh-1,ceh-10,ceh-12,ceh-13,ceh-14,ceh-16,ceh-17,ceh-2,ceh-30,ceh-31,ceh-43,ceh-8,dsc-1,lin-11,mec-3,mls-2,tab-1,ttx-3,unc-4,unc-42,vab-15_rc) 
; positions_6nt_m1 versus M00501_2.00_rc (alr-1,ceh-1,ceh-10,ceh-12,ceh-13,ceh-14,ceh-16,ceh-17,ceh-2,ceh-30,ceh-31,ceh-43,ceh-8,dsc-1,lin-11,mec-3,mls-2,tab-1,ttx-3,unc-4,unc-42,vab-15_rc); m=79/96; ncol2=7; w=0; offset=4; strand=R; shift=9; score=0.459748; ---------yaATtar
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	0	18.3763	55.8873	80.8989	6.38828	17.5519	63.7934	27.065
c	0	0	0	0	0	0	0	0	0	41.7233	14.9295	6.64058	5.83845	14.9568	6.72377	22.1589
g	0	0	0	0	0	0	0	0	0	8.68034	13.6445	1.06524	0.0255905	5.61344	14.8151	28.1695
t	0	0	0	0	0	0	0	0	0	31.2201	15.5387	11.3953	87.7477	61.8779	14.6677	22.6066
M10565_2.00_shift2 (fkh-2,unc-130) 
; positions_6nt_m1 versus M10565_2.00 (fkh-2,unc-130); m=80/96; ncol2=12; w=-3; offset=-3; strand=D; shift=2; score=0.453224; --rAayAAAyAwwy--
; cor=; Ncor=
a	0	0	65.625	78.125	65.625	21.875	68.75	96.875	100	3.125	90.625	50	28.125	18.75	0	0
c	0	0	0	12.5	3.125	43.75	15.625	0	0	65.625	0	0	0	43.75	0	0
g	0	0	31.25	6.25	15.625	0	0	0	0	0	6.25	3.125	6.25	9.375	0	0
t	0	0	3.125	3.125	15.625	34.375	15.625	3.125	0	31.25	3.125	46.875	65.625	28.125	0	0
M01690_2.00_shift7 (hmg-12) 
; positions_6nt_m1 versus M01690_2.00 (hmg-12); m=81/96; ncol2=12; w=0; offset=2; strand=D; shift=7; score=0.453139; -------atAawTAww
; cor=; Ncor=
a	0	0	0	0	0	0	0	32.1078	22.6307	76.1759	63.2674	66.917	19.5762	80.4397	51.7902	32.1162
c	0	0	0	0	0	0	0	22.6307	22.6307	4.64648	11.6336	0.0175574	0.0175574	0.0175574	0.0175574	2.38682
g	0	0	0	0	0	0	0	22.6307	22.6307	14.5311	2.31743	0.0175574	0.0175574	0.0175574	0.0175574	2.38682
t	0	0	0	0	0	0	0	22.6307	32.1078	4.64648	22.7815	33.0479	80.3887	19.5252	48.1747	63.1102
M06326_2.00_rc_shift10 (alr-1,ceh-1,ceh-10,ceh-12,ceh-13,ceh-14,ceh-16,ceh-17,ceh-2,ceh-43,ceh-8,dsc-1,lim-6,lin-11,mec-3,tab-1,ttx-3,unc-4,unc-42,vab-15_rc) 
; positions_6nt_m1 versus M06326_2.00_rc (alr-1,ceh-1,ceh-10,ceh-12,ceh-13,ceh-14,ceh-16,ceh-17,ceh-2,ceh-43,ceh-8,dsc-1,lim-6,lin-11,mec-3,tab-1,ttx-3,unc-4,unc-42,vab-15_rc); m=82/96; ncol2=6; w=0; offset=5; strand=R; shift=10; score=0.453096; ----------AATTAr
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	0	0	85.6579	100	0	1.97368	97.7632	48.0263
c	0	0	0	0	0	0	0	0	0	0	6.84211	0	0	0	0	8.81579
g	0	0	0	0	0	0	0	0	0	0	2.63158	0	0	0	0	29.8684
t	0	0	0	0	0	0	0	0	0	0	4.86842	0	100	98.0263	2.23684	13.2895
M00201_2.00_rc_shift3 (sox-2,sox-3,sox-4_rc) 
; positions_6nt_m1 versus M00201_2.00_rc (sox-2,sox-3,sox-4_rc); m=83/96; ncol2=10; w=-2; offset=-2; strand=R; shift=3; score=0.452847; ---rcrrrAyAAT---
; cor=; Ncor=
a	0	0	0	30.0752	24.1071	36.3974	26.6335	49.2606	86.4737	0.974525	99.9602	92.6882	15.9696	0	0	0
c	0	0	0	19.5642	28.5743	16.1917	19.9289	14.2552	2.8572	64.9875	0.00794488	0.94105	1.49285	0	0	0
g	0	0	0	30.9911	24.8413	27.2348	28.8517	26.2358	2.33927	7.87895	0.0156822	6.355	1.8417	0	0	0
t	0	0	0	19.3695	22.4773	20.1761	24.5858	10.2484	8.32981	26.159	0.0161598	0.0157525	80.6958	0	0	0
M06538_2.00_rc_shift9 (alr-1,ceh-10,ceh-14,ceh-16,ceh-17,ceh-8,lim-6,ttx-3,unc-4,unc-42_rc) 
; positions_6nt_m1 versus M06538_2.00_rc (alr-1,ceh-10,ceh-14,ceh-16,ceh-17,ceh-8,lim-6,ttx-3,unc-4,unc-42_rc); m=84/96; ncol2=7; w=0; offset=4; strand=R; shift=9; score=0.452387; ---------yAATwAw
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	0	0	80	100	0	56.6667	73.3333	43.3333
c	0	0	0	0	0	0	0	0	0	50	20	0	0	0	0	10
g	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3.33333	6.66667
t	0	0	0	0	0	0	0	0	0	50	0	0	100	43.3333	23.3333	40
M00211_2.00_rc_shift3 (sox-2,sox-3,sox-4_rc) 
; positions_6nt_m1 versus M00211_2.00_rc (sox-2,sox-3,sox-4_rc); m=85/96; ncol2=10; w=-2; offset=-2; strand=R; shift=3; score=0.446016; ---rsrraAyAAT---
; cor=; Ncor=
a	0	0	0	29.7775	23.1871	33.7404	30.1079	39.0979	82.3362	2.33888	99.5288	90.7943	12.5868	0	0	0
c	0	0	0	19.3706	28.039	19.4665	16.3592	19.2223	1.95582	59.1261	0.106506	2.2901	2.9525	0	0	0
g	0	0	0	30.0768	25.1183	27.9019	32.9433	21.6731	1.68339	11.701	0.350094	6.87985	3.60619	0	0	0
t	0	0	0	20.7751	23.6555	18.8912	20.5896	20.0067	14.0246	26.8341	0.0145589	0.0357429	80.8545	0	0	0
M06375_2.00_rc_shift10 (mab-5,nob-1_rc) 
; positions_6nt_m1 versus M06375_2.00_rc (mab-5,nob-1_rc); m=86/96; ncol2=6; w=0; offset=5; strand=R; shift=10; score=0.436066; ----------WMTTAw
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	0	0	75	75	0	0	100	33.3333
c	0	0	0	0	0	0	0	0	0	0	0	25	0	8.33333	0	0
g	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
t	0	0	0	0	0	0	0	0	0	0	25	0	100	91.6667	0	66.6667
M06202_2.00_shift0 (fkh-7) 
; positions_6nt_m1 versus M06202_2.00 (fkh-7); m=87/96; ncol2=14; w=-5; offset=-5; strand=D; shift=0; score=0.426839; aarrbyAAAAAAAt--
; cor=; Ncor=
a	59.0909	54.5455	36.3636	45.4545	9.09091	4.54545	90.9091	100	100	100	100	100	100	18.1818	0	0
c	18.1818	13.6364	13.6364	22.7273	36.3636	40.9091	0	0	0	0	0	0	0	4.54545	0	0
g	22.7273	18.1818	36.3636	27.2727	27.2727	18.1818	9.09091	0	0	0	0	0	0	18.1818	0	0
t	0	13.6364	13.6364	4.54545	27.2727	36.3636	0	0	0	0	0	0	0	59.0909	0	0
M06432_2.00_shift7 (fax-1) 
; positions_6nt_m1 versus M06432_2.00 (fax-1); m=88/96; ncol2=13; w=0; offset=2; strand=D; shift=7; score=0.421987; -------AaraATCAr
; cor=; Ncor=
a	0	0	0	0	0	0	0	78.5714	64.2857	57.1429	57.1429	78.5714	14.2857	0	92.8571	64.2857
c	0	0	0	0	0	0	0	21.4286	21.4286	0	7.14286	0	7.14286	85.7143	0	0
g	0	0	0	0	0	0	0	0	7.14286	28.5714	14.2857	14.2857	0	0	7.14286	35.7143
t	0	0	0	0	0	0	0	0	7.14286	14.2857	21.4286	7.14286	78.5714	14.2857	0	0
M06197_2.00_shift4 (fkh-2,fkh-6) 
; positions_6nt_m1 versus M06197_2.00 (fkh-2,fkh-6); m=89/96; ncol2=8; w=-1; offset=-1; strand=D; shift=4; score=0.421965; ----tvtAAACA----
; cor=; Ncor=
a	0	0	0	0	15	35	20	100	95	100	0	100	0	0	0	0
c	0	0	0	0	0	25	15	0	5	0	85	0	0	0	0	0
g	0	0	0	0	20	30	0	0	0	0	0	0	0	0	0	0
t	0	0	0	0	65	10	65	0	0	0	15	0	0	0	0	0
M06352_2.00_rc_shift9 (alr-1,ceh-10,ceh-14,ceh-16,ceh-17,ceh-8,lim-6,ttx-3,unc-4,unc-42_rc) 
; positions_6nt_m1 versus M06352_2.00_rc (alr-1,ceh-10,ceh-14,ceh-16,ceh-17,ceh-8,lim-6,ttx-3,unc-4,unc-42_rc); m=90/96; ncol2=8; w=0; offset=4; strand=R; shift=9; score=0.414688; ---------yAATwAw
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	0	0	80	100	0	56.6667	73.3333	43.3333
c	0	0	0	0	0	0	0	0	0	50	20	0	0	0	0	10
g	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3.33333	6.66667
t	0	0	0	0	0	0	0	0	0	50	0	0	100	43.3333	23.3333	40
M01665_2.00_shift9 (M01665_2.00) 
; positions_6nt_m1 versus M01665_2.00; m=91/96; ncol2=8; w=0; offset=4; strand=D; shift=9; score=0.411274; ---------wrATtaa
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	0	27.7507	34.5645	78.7788	17.3718	12.5278	54.3908	48.8924
c	0	0	0	0	0	0	0	0	0	23.8853	19.942	0.282704	1.49907	20.8624	15.1227	18.7205
g	0	0	0	0	0	0	0	0	0	17.6947	25.3512	11.0967	6.32712	10.4641	12.3814	17.8075
t	0	0	0	0	0	0	0	0	0	30.6693	20.1424	9.84185	74.8021	56.1457	18.1051	14.5796
M01667_2.00_shift9 (cfi-1) 
; positions_6nt_m1 versus M01667_2.00 (cfi-1); m=92/96; ncol2=8; w=0; offset=4; strand=D; shift=9; score=0.411021; ---------yrATyaa
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	0	24.5252	30.832	94.1882	5.17629	19.1668	56.2171	50.2612
c	0	0	0	0	0	0	0	0	0	27.1045	19.6593	0.0248548	3.50464	30.9749	10.0666	15.9145
g	0	0	0	0	0	0	0	0	0	21.5355	25.4968	0.0593262	0.0248248	8.87446	16.2683	17.5883
t	0	0	0	0	0	0	0	0	0	26.8348	24.012	5.72759	91.2942	40.9838	17.4479	16.236
M01664_2.00_shift9 (M01664_2.00) 
; positions_6nt_m1 versus M01664_2.00; m=93/96; ncol2=8; w=0; offset=4; strand=D; shift=9; score=0.409032; ---------ywATyaa
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	0	22.7052	36.4833	95.4295	0.322618	18.0785	60.1595	50.0975
c	0	0	0	0	0	0	0	0	0	26.9126	11.2105	0.0149714	2.20056	42.2972	7.14919	14.6431
g	0	0	0	0	0	0	0	0	0	20.3401	24.4555	0.0360946	0.0879235	6.0178	18.8592	17.0129
t	0	0	0	0	0	0	0	0	0	30.042	27.8506	4.51944	97.3889	33.6065	13.8322	18.2465
M01678_2.00_shift4 (M01678_2.00) 
; positions_6nt_m1 versus M01678_2.00; m=94/96; ncol2=8; w=-1; offset=-1; strand=D; shift=4; score=0.408589; ----aaarwAww----
; cor=; Ncor=
a	0	0	0	0	42.1032	36.1549	39.9952	40.7012	28.7986	78.0909	56.2556	41.7051	0	0	0	0
c	0	0	0	0	21.3302	21.0692	12.9198	8.13567	14.301	0.0177366	0.0620326	9.30567	0	0	0	0
g	0	0	0	0	21.9798	21.281	23.3071	26.4765	13.0701	13.9834	17.6353	11.2529	0	0	0	0
t	0	0	0	0	14.5869	21.4949	23.7779	24.6866	43.8304	7.90798	26.0471	37.7363	0	0	0	0
M02530_2.00_shift4 (lin-54) 
; positions_6nt_m1 versus M02530_2.00 (lin-54); m=95/96; ncol2=8; w=-1; offset=-1; strand=D; shift=4; score=0.408395; ----ttyrAAww----
; cor=; Ncor=
a	0	0	0	0	20.9734	17.0043	11.8837	65.3952	80.915	70.7012	26.6361	25.5167	0	0	0	0
c	0	0	0	0	22.2703	21.834	41.895	2.946	3.1062	5.52047	23.1563	24.0308	0	0	0	0
g	0	0	0	0	21.8294	20.9778	13.2655	27.9509	6.07025	8.92148	8.43396	21.1013	0	0	0	0
t	0	0	0	0	34.9269	40.1839	32.9558	3.70784	9.90856	14.8569	41.7737	29.3512	0	0	0	0
M03538_2.00_shift6 (sox-2,sox-3,sox-4) 
; positions_6nt_m1 versus M03538_2.00 (sox-2,sox-3,sox-4); m=96/96; ncol2=17; w=0; offset=1; strand=D; shift=6; score=0.401797; ------aAACAATray
; cor=; Ncor=
a	0	0	0	0	0	0	63.0589	97.9202	98.6664	0.0202901	99.8883	99.9695	0	33.3542	47.2358	10.5608
c	0	0	0	0	0	0	12.7846	0.248781	0.0601624	99.8275	0.0203025	0.0101595	0.0304785	0.0986016	15.1524	45.5149
g	0	0	0	0	0	0	15.9045	1.19415	1.10298	0	0.0101513	0.020319	0	54.8404	16.8598	0.00908843
t	0	0	0	0	0	0	8.25203	0.636879	0.17046	0.152176	0.08121	0	99.9695	11.7067	20.752	43.9153