/var/www/html/rsat/public_html/tmp/www-data/2026/04/21/peak-motifs.2026-04-21.024047_2026-04-21.024047_gRzMOf/results/discovered_motifs/positions_6nt_m2/peak-motifs_positions_6nt_m2_vs_db_cisBP_Caenorhabditis_elegans.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2026/04/21/peak-motifs.2026-04-21.024047_2026-04-21.024047_gRzMOf/results/discovered_motifs/positions_6nt_m2/peak-motifs_positions_6nt_m2.tf -format2 tf -file2 $RSAT/public_html/motif_databases/cisBP2/cisBP_Caenorhabditis_elegans_2019.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/04/21/peak-motifs.2026-04-21.024047_2026-04-21.024047_gRzMOf/results/discovered_motifs/positions_6nt_m2/peak-motifs_positions_6nt_m2_vs_db_cisBP_Caenorhabditis_elegans
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/cisBP2/cisBP_Caenorhabditis_elegans_2019.tf
	file1 	$RSAT/public_html/tmp/www-data/2026/04/21/peak-motifs.2026-04-21.024047_2026-04-21.024047_gRzMOf/results/discovered_motifs/positions_6nt_m2/peak-motifs_positions_6nt_m2.tf
 Output files
	alignments_1ton_html	$RSAT/public_html/tmp/www-data/2026/04/21/peak-motifs.2026-04-21.024047_2026-04-21.024047_gRzMOf/results/discovered_motifs/positions_6nt_m2/peak-motifs_positions_6nt_m2_vs_db_cisBP_Caenorhabditis_elegans_alignments_1ton.html
	match_table_txt	$RSAT/public_html/tmp/www-data/2026/04/21/peak-motifs.2026-04-21.024047_2026-04-21.024047_gRzMOf/results/discovered_motifs/positions_6nt_m2/peak-motifs_positions_6nt_m2_vs_db_cisBP_Caenorhabditis_elegans.tab
	html_index   	$RSAT/public_html/tmp/www-data/2026/04/21/peak-motifs.2026-04-21.024047_2026-04-21.024047_gRzMOf/results/discovered_motifs/positions_6nt_m2/peak-motifs_positions_6nt_m2_vs_db_cisBP_Caenorhabditis_elegans_index.html
	match_table_html	$RSAT/public_html/tmp/www-data/2026/04/21/peak-motifs.2026-04-21.024047_2026-04-21.024047_gRzMOf/results/discovered_motifs/positions_6nt_m2/peak-motifs_positions_6nt_m2_vs_db_cisBP_Caenorhabditis_elegans.html
	prefix       	$RSAT/public_html/tmp/www-data/2026/04/21/peak-motifs.2026-04-21.024047_2026-04-21.024047_gRzMOf/results/discovered_motifs/positions_6nt_m2/peak-motifs_positions_6nt_m2_vs_db_cisBP_Caenorhabditis_elegans
	alignments_1ton	$RSAT/public_html/tmp/www-data/2026/04/21/peak-motifs.2026-04-21.024047_2026-04-21.024047_gRzMOf/results/discovered_motifs/positions_6nt_m2/peak-motifs_positions_6nt_m2_vs_db_cisBP_Caenorhabditis_elegans_alignments_1ton.tab
 Matrices
	file1	1 matrices	$RSAT/public_html/tmp/www-data/2026/04/21/peak-motifs.2026-04-21.024047_2026-04-21.024047_gRzMOf/results/discovered_motifs/positions_6nt_m2/peak-motifs_positions_6nt_m2.tf
		file1	1	10	142
	file2	3438 matrices	$RSAT/public_html/motif_databases/cisBP2/cisBP_Caenorhabditis_elegans_2019.tf
		file2		1		7		100.0001
		file2		2		8		100.00002892
		file2		3		11		100.00004702
		file2		4		9		100
		file2		5		10		100.0001
		file2		6		10		100.0001
		file2		7		13		100.0001
		file2		8		10		100.0001
		file2		9		10		100.0001
		file2		10		10		100.0001
		file2		11		10		100.0001
		...	3428 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
positions_6nt_m2 M02523_2.00 positions_6nt_m2 lin-54 0.910 0.910 10 10 10 10 1.0000 1.0000 1.0000 D 0
positions_6nt_m2 M01322_2.00 positions_6nt_m2 lin-54 0.935 0.842 10 9 9 10 0.9000 0.9000 1.0000 D 0
positions_6nt_m2 M01321_2.00 positions_6nt_m2 lin-54 0.913 0.822 10 9 9 10 0.9000 0.9000 1.0000 D 0
positions_6nt_m2 M02527_2.00 positions_6nt_m2 lin-54 0.898 0.808 10 9 9 10 0.9000 0.9000 1.0000 D 0
positions_6nt_m2 M02528_2.00 positions_6nt_m2 lin-54 0.807 0.807 10 10 10 10 1.0000 1.0000 1.0000 D 0
positions_6nt_m2 M02521_2.00 positions_6nt_m2 lin-54 0.802 0.802 10 10 10 10 1.0000 1.0000 1.0000 D 0
positions_6nt_m2 M02525_2.00 positions_6nt_m2 lin-54 0.773 0.773 10 10 10 10 1.0000 1.0000 1.0000 D 0
positions_6nt_m2 M02535_2.00 positions_6nt_m2 lin-54 0.771 0.771 10 10 10 10 1.0000 1.0000 1.0000 D 0
positions_6nt_m2 M01320_2.00 positions_6nt_m2 lin-54 0.855 0.769 10 9 9 10 0.9000 0.9000 1.0000 D 0
positions_6nt_m2 M00610_2.00 positions_6nt_m2 die-1 0.753 0.753 10 10 10 10 1.0000 1.0000 1.0000 D 0
positions_6nt_m2 M00200_2.00 positions_6nt_m2 M00200_2.00 0.752 0.752 10 10 10 10 1.0000 1.0000 1.0000 D 0
positions_6nt_m2 M00198_2.00 positions_6nt_m2 M00198_2.00 0.750 0.750 10 10 10 10 1.0000 1.0000 1.0000 D 0
positions_6nt_m2 M01087_2.00 positions_6nt_m2 lin-54 0.916 0.749 10 10 9 11 0.8182 0.9000 0.9000 D -1
positions_6nt_m2 M02526_2.00 positions_6nt_m2 lin-54 0.930 0.744 10 8 8 10 0.8000 0.8000 1.0000 D 1
positions_6nt_m2 M00712_2.00 positions_6nt_m2 pop-1 0.741 0.741 10 10 10 10 1.0000 1.0000 1.0000 R 0
positions_6nt_m2 M02531_2.00 positions_6nt_m2 lin-54 0.899 0.736 10 10 9 11 0.8182 0.9000 0.9000 D -1
positions_6nt_m2 M02534_2.00 positions_6nt_m2 lin-54 0.897 0.734 10 10 9 11 0.8182 0.9000 0.9000 D -1
positions_6nt_m2 M02522_2.00 positions_6nt_m2 lin-54 0.914 0.731 10 8 8 10 0.8000 0.8000 1.0000 D 1
positions_6nt_m2 M02529_2.00 positions_6nt_m2 lin-54 0.888 0.711 10 8 8 10 0.8000 0.8000 1.0000 D 1
positions_6nt_m2 M02533_2.00 positions_6nt_m2 lin-54 0.779 0.701 10 9 9 10 0.9000 0.9000 1.0000 D 0
positions_6nt_m2 M01319_2.00 positions_6nt_m2 lin-54 0.862 0.689 10 8 8 10 0.8000 0.8000 1.0000 D 2
positions_6nt_m2 M09406_2.00 positions_6nt_m2 M09406_2.00 0.746 0.679 10 11 10 11 0.9091 1.0000 0.9091 R 0
positions_6nt_m2 M02524_2.00 positions_6nt_m2 lin-54 0.754 0.678 10 9 9 10 0.9000 0.9000 1.0000 D 0
positions_6nt_m2 M06451_2.00 positions_6nt_m2 M06451_2.00 0.826 0.661 10 8 8 10 0.8000 0.8000 1.0000 D 1
positions_6nt_m2 M02520_2.00 positions_6nt_m2 lin-54 0.810 0.648 10 8 8 10 0.8000 0.8000 1.0000 R 1
positions_6nt_m2 M02530_2.00 positions_6nt_m2 lin-54 0.807 0.646 10 8 8 10 0.8000 0.8000 1.0000 D 2
positions_6nt_m2 M02646_2.00 positions_6nt_m2 M02646_2.00 0.710 0.639 10 9 9 10 0.9000 0.9000 1.0000 D 1
positions_6nt_m2 M05777_2.00 positions_6nt_m2 M05777_2.00 0.701 0.631 10 9 9 10 0.9000 0.9000 1.0000 D 0
positions_6nt_m2 M00207_2.00 positions_6nt_m2 M00207_2.00 0.761 0.609 10 8 8 10 0.8000 0.8000 1.0000 D 1
positions_6nt_m2 M06243_2.00 positions_6nt_m2 ceh-20,ceh-40,ceh-60 0.751 0.601 10 8 8 10 0.8000 0.8000 1.0000 D 1
positions_6nt_m2 M06487_2.00 positions_6nt_m2 ceh-20,ceh-40,ceh-60 0.751 0.601 10 8 8 10 0.8000 0.8000 1.0000 D 1
positions_6nt_m2 M06246_2.00 positions_6nt_m2 ceh-20,ceh-40,ceh-60 0.710 0.568 10 8 8 10 0.8000 0.8000 1.0000 R 1
positions_6nt_m2 M09395_2.00 positions_6nt_m2 M09395_2.00 0.734 0.565 10 13 10 13 0.7692 1.0000 0.7692 R -1
positions_6nt_m2 M07296_2.00 positions_6nt_m2 lin-54 0.843 0.562 10 15 10 15 0.6667 1.0000 0.6667 D -5
positions_6nt_m2 M00193_2.00 positions_6nt_m2 M00193_2.00 0.768 0.558 10 9 8 11 0.7273 0.8000 0.8889 R -1
positions_6nt_m2 M05890_2.00 positions_6nt_m2 M05890_2.00 0.709 0.545 10 13 10 13 0.7692 1.0000 0.7692 D -2
positions_6nt_m2 M07297_2.00 positions_6nt_m2 lin-54 0.787 0.525 10 15 10 15 0.6667 1.0000 0.6667 D 0
positions_6nt_m2 M09328_2.00 positions_6nt_m2 fax-1 0.733 0.524 10 14 10 14 0.7143 1.0000 0.7143 D -1
positions_6nt_m2 M05895_2.00 positions_6nt_m2 M05895_2.00 0.754 0.503 10 10 8 12 0.6667 0.8000 0.8000 D 2
positions_6nt_m2 M07301_2.00 positions_6nt_m2 lin-54 0.799 0.480 10 14 9 15 0.6000 0.9000 0.6429 D -5
positions_6nt_m2 M07299_2.00 positions_6nt_m2 lin-54 0.710 0.473 10 15 10 15 0.6667 1.0000 0.6667 D 0
positions_6nt_m2 M00654_2.00 positions_6nt_m2 mab-23 0.740 0.471 10 8 7 11 0.6364 0.7000 0.8750 R 3
positions_6nt_m2 M07295_2.00 positions_6nt_m2 lin-54 0.834 0.469 10 15 9 16 0.5625 0.9000 0.6000 D -6
positions_6nt_m2 M06541_2.00 positions_6nt_m2 M06541_2.00 0.728 0.463 10 8 7 11 0.6364 0.7000 0.8750 R -1
positions_6nt_m2 M06358_2.00 positions_6nt_m2 M06358_2.00 0.728 0.463 10 8 7 11 0.6364 0.7000 0.8750 R -1
positions_6nt_m2 M06359_2.00 positions_6nt_m2 M06359_2.00 0.725 0.461 10 8 7 11 0.6364 0.7000 0.8750 R -1
positions_6nt_m2 M07300_2.00 positions_6nt_m2 lin-54 0.813 0.458 10 15 9 16 0.5625 0.9000 0.6000 D -6
positions_6nt_m2 M07298_2.00 positions_6nt_m2 lin-54 0.791 0.445 10 15 9 16 0.5625 0.9000 0.6000 D -6
positions_6nt_m2 M05877_2.00 positions_6nt_m2 nhr-91 0.813 0.407 10 8 6 12 0.5000 0.6000 0.7500 D -2 
 Host name	rsat
 Job started	2026-04-21.024126
 Job done	2026-04-21.024135
 Seconds	1.48
	user	1.48
	system	0.44
	cuser	6.1
;	csystem	1.19