One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2026/04/21/peak-motifs.2026-04-21.024047_2026-04-21.024047_gRzMOf/results/discovered_motifs/positions_6nt_m2/peak-motifs_positions_6nt_m2.tf -format2 tf -file2 $RSAT/public_html/motif_databases/cisBP2/cisBP_Caenorhabditis_elegans_2019.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/04/21/peak-motifs.2026-04-21.024047_2026-04-21.024047_gRzMOf/results/discovered_motifs/positions_6nt_m2/peak-motifs_positions_6nt_m2_vs_db_cisBP_Caenorhabditis_elegans

One-to-n matrix alignment; reference matrix: positions_6nt_m2_shift6 ; 50 matrices ; sort_field=Ncor

Matrix nameAligned logoscor Ncor Aligned matrices
positions_6nt_m2_shift6 (positions_6nt_m2)     
; positions_6nt_m2; m=0 (reference); ncol1=10; shift=6; ncol=16; ------wrTTCAAAaw
; Alignment reference
a	0	0	0	0	0	0	44	46	0	0	0	142	142	142	94	58
c	0	0	0	0	0	0	30	24	0	0	142	0	0	0	15	13
g	0	0	0	0	0	0	8	40	0	0	0	0	0	0	7	23
t	0	0	0	0	0	0	60	32	142	142	0	0	0	0	26	48
M02523_2.00_shift6 (lin-54) 
; positions_6nt_m2 versus M02523_2.00 (lin-54); m=1/49; ncol2=10; w=0; offset=0; strand=D; shift=6; score=0.90963; ------aaTTCAAAyt
; cor=; Ncor=
a	0	0	0	0	0	0	32.4236	63.7246	0.00966714	0.00966714	0.00966714	90.5598	99.971	99.971	13.0179	22.8089
c	0	0	0	0	0	0	22.5255	2.20081	0.00966714	0.00966714	77.5533	0.00966714	0.00966714	0.00966714	25.1034	22.8089
g	0	0	0	0	0	0	22.5255	22.5389	0.00966714	0.00966714	0.00966714	9.42084	0.00966714	0.00966714	2.4842	22.8089
t	0	0	0	0	0	0	22.5255	11.5357	99.971	99.971	22.4274	0	0	0	59.3945	31.5734
M01322_2.00_shift6 (lin-54) 
; positions_6nt_m2 versus M01322_2.00 (lin-54); m=2/49; ncol2=9; w=0; offset=0; strand=D; shift=6; score=0.841847; ------wwTTyAAAw-
; cor=; Ncor=
a	0	0	0	0	0	0	34.0772	41.4312	5.74481	6.17667	2.49798	81.4779	89.5954	88.3237	30.3643	0
c	0	0	0	0	0	0	13.4453	5.89459	5.74481	3.59944	60.672	1.76885	1.47006	2.53707	24.6128	0
g	0	0	0	0	0	0	24.0138	17.014	3.02919	4.53026	0.0306685	8.50226	3.2069	5.16037	7.56301	0
t	0	0	0	0	0	0	28.4637	35.6602	85.4812	85.6936	36.7994	8.25098	5.72764	3.97891	37.4598	0
M01321_2.00_shift6 (lin-54) 
; positions_6nt_m2 versus M01321_2.00 (lin-54); m=3/49; ncol2=9; w=0; offset=0; strand=D; shift=6; score=0.821545; ------aaTTyAAAh-
; cor=; Ncor=
a	0	0	0	0	0	0	37.6035	45.4381	13.7399	10.9833	1.21372	71.348	85.5693	78.6029	27.9467	0
c	0	0	0	0	0	0	19.4354	10.7656	8.67375	5.56434	53.7147	2.11186	1.53622	5.49813	28.2276	0
g	0	0	0	0	0	0	21.2657	21.6792	6.75512	4.69444	5.27874	24.2294	3.31788	10.1189	12.9397	0
t	0	0	0	0	0	0	21.6953	22.1171	70.8313	78.7579	39.7928	2.31074	9.57663	5.78003	30.8859	0
M02527_2.00_shift6 (lin-54) 
; positions_6nt_m2 versus M02527_2.00 (lin-54); m=4/49; ncol2=9; w=0; offset=0; strand=D; shift=6; score=0.808289; ------aATTyAAAw-
; cor=; Ncor=
a	0	0	0	0	0	0	34.9676	68.5347	0.0205578	0.0205578	0.0205578	78.7598	99.9383	99.9383	28.5406	0
c	0	0	0	0	0	0	15.8972	0.0205578	0.0205578	0.0205578	56.1674	0.0205578	0.0205578	0.0205578	21.1983	0
g	0	0	0	0	0	0	24.868	21.0663	0.0205578	0.0205578	0.0205578	21.199	0.0205578	0.0205578	9.12334	0
t	0	0	0	0	0	0	24.2672	10.3784	99.9383	99.9383	43.7915	0.0205578	0.0205578	0.0205578	41.1378	0
M02528_2.00_shift6 (lin-54) 
; positions_6nt_m2 versus M02528_2.00 (lin-54); m=5/49; ncol2=10; w=0; offset=0; strand=D; shift=6; score=0.806824; ------awttyraawt
; cor=; Ncor=
a	0	0	0	0	0	0	41.158	35.0115	20.9094	12.8158	17.2003	46.8075	60.2825	59.6494	30.5028	21.3133
c	0	0	0	0	0	0	20.1452	15.2248	10.7967	12.3651	27.9928	7.99937	14.5366	8.64454	19.2609	17.3835
g	0	0	0	0	0	0	17.3835	19.2609	8.64454	14.5366	7.99937	27.9928	12.3651	10.7967	15.2248	20.1452
t	0	0	0	0	0	0	21.3133	30.5028	59.6494	60.2825	46.8075	17.2003	12.8158	20.9094	35.0115	41.158
M02521_2.00_shift6 (lin-54) 
; positions_6nt_m2 versus M02521_2.00 (lin-54); m=6/49; ncol2=10; w=0; offset=0; strand=D; shift=6; score=0.802361; ------awTTyrAAwt
; cor=; Ncor=
a	0	0	0	0	0	0	52.2758	50.4019	11.6979	6.03924	2.0663	51.2477	87.5204	73.9188	29.3858	17.8378
c	0	0	0	0	0	0	12.2074	7.00675	9.06232	4.24737	42.2735	4.4125	2.19297	5.32101	13.2055	17.679
g	0	0	0	0	0	0	17.679	13.2055	5.32101	2.19297	4.4125	42.2735	4.24737	9.06232	7.00675	12.2074
t	0	0	0	0	0	0	17.8378	29.3858	73.9188	87.5204	51.2477	2.0663	6.03924	11.6979	50.4019	52.2758
M02525_2.00_shift6 (lin-54) 
; positions_6nt_m2 versus M02525_2.00 (lin-54); m=7/49; ncol2=10; w=0; offset=0; strand=D; shift=6; score=0.773355; ------mrTtyraAyk
; cor=; Ncor=
a	0	0	0	0	0	0	29.3063	45.7419	6.13136	10.6775	5.62476	50.8994	60.0005	75.589	12.2411	23.8592
c	0	0	0	0	0	0	27.0264	14.3313	12.4657	16.0206	32.9219	10.554	13.3014	5.81391	27.6857	19.808
g	0	0	0	0	0	0	19.808	27.6857	5.81391	13.3014	10.554	32.9219	16.0206	12.4657	14.3313	27.0264
t	0	0	0	0	0	0	23.8592	12.2411	75.589	60.0005	50.8994	5.62476	10.6775	6.13136	45.7419	29.3063
M02535_2.00_shift6 (lin-54) 
; positions_6nt_m2 versus M02535_2.00 (lin-54); m=8/49; ncol2=10; w=0; offset=0; strand=D; shift=6; score=0.771397; ------awttyraawt
; cor=; Ncor=
a	0	0	0	0	0	0	54.2652	27.9593	9.65347	20.2572	8.44571	43.2293	58.7752	60.8045	38.1215	22.5834
c	0	0	0	0	0	0	11.7995	14.3987	17.5727	12.377	28.0504	20.2746	8.59055	11.9694	19.5206	11.3519
g	0	0	0	0	0	0	11.3519	19.5206	11.9694	8.59055	20.2746	28.0504	12.377	17.5727	14.3987	11.7995
t	0	0	0	0	0	0	22.5834	38.1215	60.8045	58.7752	43.2293	8.44571	20.2572	9.65347	27.9593	54.2652
M01320_2.00_shift6 (lin-54) 
; positions_6nt_m2 versus M01320_2.00 (lin-54); m=9/49; ncol2=9; w=0; offset=0; strand=D; shift=6; score=0.769129; ------rrttyraah-
; cor=; Ncor=
a	0	0	0	0	0	0	29.025	31.6363	18.4777	19.9513	7.82148	53.1314	61.4935	63.3081	25.6334	0
c	0	0	0	0	0	0	24.9821	20.9954	16.3883	13.1089	48.7582	3.79152	6.22723	7.75248	29.1921	0
g	0	0	0	0	0	0	25.7429	26.1619	21.4681	21.185	12.6401	36.6997	11.8098	15.7685	15.3928	0
t	0	0	0	0	0	0	20.2501	21.2064	43.6659	45.7547	30.7802	6.37744	20.4694	13.1709	29.7818	0
M00610_2.00_shift6 (die-1) 
; positions_6nt_m2 versus M00610_2.00 (die-1); m=10/49; ncol2=10; w=0; offset=0; strand=D; shift=6; score=0.753256; ------awTTTAAAma
; cor=; Ncor=
a	0	0	0	0	0	0	59.2549	41.96	0.0134115	0.0134115	0.0134115	99.9598	99.9598	99.9598	41.6613	30.3954
c	0	0	0	0	0	0	11.0035	14.4385	0.0134115	0.0134115	0.0134115	0.0134115	0.0134115	0.0134115	30.3189	23.2015
g	0	0	0	0	0	0	18.7381	18.1393	0.0134115	0.0134115	0.0134115	0.0134115	0.0134115	0.0134115	14.0099	23.2015
t	0	0	0	0	0	0	11.0035	25.4622	99.9598	99.9598	99.9598	0.0134115	0.0134115	0.0134115	14.0099	23.2015
M00200_2.00_shift6 (M00200_2.00) 
; positions_6nt_m2 versus M00200_2.00; m=11/49; ncol2=10; w=0; offset=0; strand=D; shift=6; score=0.751765; ------aswTcAAAgr
; cor=; Ncor=
a	0	0	0	0	0	0	48.7159	10.3241	63.9521	11.8677	10.7632	87.4585	80.9823	75.8453	18.2254	28.4337
c	0	0	0	0	0	0	13.4101	36.7628	4.17091	3.50372	67.7712	1.71801	5.89574	1.40312	17.5107	18.3124
g	0	0	0	0	0	0	19.221	41.0375	2.26627	1.21388	13.4118	1.32467	8.62126	9.96118	57.5592	40.3494
t	0	0	0	0	0	0	18.653	11.8756	29.6107	83.4147	8.05374	9.49879	4.50069	12.7904	6.70473	12.9045
M00198_2.00_shift6 (M00198_2.00) 
; positions_6nt_m2 versus M00198_2.00; m=12/49; ncol2=10; w=0; offset=0; strand=D; shift=6; score=0.749759; ------aswTcAAAgr
; cor=; Ncor=
a	0	0	0	0	0	0	48.7867	10.5157	63.7879	12.7896	11.7054	87.5401	81.883	72.8316	17.9802	26.7968
c	0	0	0	0	0	0	12.903	36.7034	4.46185	3.66428	66.6899	1.39389	4.64268	1.97023	17.8013	18.6955
g	0	0	0	0	0	0	19.4424	40.5635	2.21569	1.38907	13.5998	1.36629	8.54453	10.7849	56.2199	40.3779
t	0	0	0	0	0	0	18.8678	12.2175	29.5346	82.157	8.0049	9.69972	4.92977	14.4133	7.99863	14.1298
M01087_2.00_shift5 (lin-54) 
; positions_6nt_m2 versus M01087_2.00 (lin-54); m=13/49; ncol2=10; w=-1; offset=-1; strand=D; shift=5; score=0.749331; -----aawTTyAAAh-
; cor=; Ncor=
a	0	0	0	0	0	36.3763	43.5854	43.5354	10.4843	6.06454	0.312244	75.8381	89.9183	83.0968	29.3712	0
c	0	0	0	0	0	19.3737	14.9502	8.03314	8.16517	5.16786	53.3049	0.0142443	2.31382	3.85745	25.5341	0
g	0	0	0	0	0	19.3737	17.5442	18.0578	6.1711	4.62955	7.28654	20.0574	3.15473	6.35986	6.61947	0
t	0	0	0	0	0	24.8763	23.9202	30.3737	75.1794	84.1381	39.0963	4.09023	4.61311	6.68593	38.4752	0
M02526_2.00_shift7 (lin-54) 
; positions_6nt_m2 versus M02526_2.00 (lin-54); m=14/49; ncol2=8; w=0; offset=1; strand=D; shift=7; score=0.743688; -------wttyAAAw-
; cor=; Ncor=
a	0	0	0	0	0	0	0	36.2822	14.2305	14.9465	7.21233	72.6622	79.8606	74.0348	29.0887	0
c	0	0	0	0	0	0	0	14.0318	15.1105	11.0726	52.2371	0.0422488	3.85851	6.01667	24.7877	0
g	0	0	0	0	0	0	0	23.6019	11.1941	8.97528	8.54881	23.0075	3.59766	8.53807	10.5946	0
t	0	0	0	0	0	0	0	26.0841	59.4649	65.0057	32.0018	4.288	12.6833	11.4105	35.529	0
M00712_2.00_rc_shift6 (pop-1_rc) 
; positions_6nt_m2 versus M00712_2.00_rc (pop-1_rc); m=15/49; ncol2=10; w=0; offset=0; strand=R; shift=6; score=0.741395; ------aswwcaaarr
; cor=; Ncor=
a	0	0	0	0	0	0	35.2953	23.4341	29.2826	33.2905	8.03659	67.0533	56.7128	54.1657	30.8356	30.6823
c	0	0	0	0	0	0	22.2814	28.3376	22.3537	14.0873	45.7872	3.0207	15.7683	11.8467	15.7788	17.008
g	0	0	0	0	0	0	22.0597	26.1589	22.1313	19.9908	22.511	10.1299	8.82864	16.3144	37.2879	34.25
t	0	0	0	0	0	0	20.3636	22.0694	26.2324	32.6313	23.6652	19.7962	18.6902	17.6732	16.0976	18.0597
M02531_2.00_shift5 (lin-54) 
; positions_6nt_m2 versus M02531_2.00 (lin-54); m=16/49; ncol2=10; w=-1; offset=-1; strand=D; shift=5; score=0.735917; -----wwwttyrAAh-
; cor=; Ncor=
a	0	0	0	0	0	32.9088	34.1064	38.0265	18.2256	18.4768	7.08535	67.8507	77.3469	72.7567	29.9483	0
c	0	0	0	0	0	21.1945	19.0961	14.1297	14.0529	10.6602	46.4339	0.746253	3.62662	6.40527	26.0358	0
g	0	0	0	0	0	20.7748	21.5308	22.6075	14.0529	12.5098	9.95455	25.721	7.91137	10.9915	10.5854	0
t	0	0	0	0	0	25.1219	25.2666	25.2363	53.6686	58.3532	36.5262	5.68203	11.1151	9.84655	33.4306	0
M02534_2.00_shift5 (lin-54) 
; positions_6nt_m2 versus M02534_2.00 (lin-54); m=17/49; ncol2=10; w=-1; offset=-1; strand=D; shift=5; score=0.734091; -----wwwttyAAAh-
; cor=; Ncor=
a	0	0	0	0	0	32.5158	35.8359	37.6331	18.4463	19.8756	7.17216	70.0958	75.2532	74.6615	29.7928	0
c	0	0	0	0	0	21.796	18.896	14.7005	15.5625	11.1283	45.1598	0.22088	4.62214	6.00723	26.1609	0
g	0	0	0	0	0	19.3313	20.2661	21.9306	13.8027	13.323	13.8766	24.0435	8.17318	10.0038	10.1175	0
t	0	0	0	0	0	26.3568	25.0019	25.7358	52.1885	55.673	33.7914	5.63988	11.9515	9.32748	33.9288	0
M02522_2.00_shift7 (lin-54) 
; positions_6nt_m2 versus M02522_2.00 (lin-54); m=18/49; ncol2=8; w=0; offset=1; strand=D; shift=7; score=0.731423; -------wTTyAAAy-
; cor=; Ncor=
a	0	0	0	0	0	0	0	61.6709	6.79201	0.0163827	6.56946	80.2916	99.95	96.1727	22.5838	0
c	0	0	0	0	0	0	0	0.0212585	0.0169377	1.65465	60.6324	1.65465	0.0166556	0.0188537	41.9137	0
g	0	0	0	0	0	0	0	10.6505	0.0169377	0.0163827	0.0163827	14.7608	0.0166556	1.90422	9.69716	0
t	0	0	0	0	0	0	0	27.6573	93.1741	98.3126	32.7818	3.29292	0.0166556	1.90422	25.8054	0
M02529_2.00_shift7 (lin-54) 
; positions_6nt_m2 versus M02529_2.00 (lin-54); m=19/49; ncol2=8; w=0; offset=1; strand=D; shift=7; score=0.710672; -------kTTyAAAt-
; cor=; Ncor=
a	0	0	0	0	0	0	0	21.6253	0.019216	0.019216	9.62721	84.5696	99.9424	96.0992	8.84254	0
c	0	0	0	0	0	0	0	0.0269978	0.019216	1.94081	61.5104	0.019216	0.019216	1.94081	23.5311	0
g	0	0	0	0	0	0	0	27.0248	0.019216	0.019216	0.019216	15.392	0.019216	0.019216	0.0293772	0
t	0	0	0	0	0	0	0	51.3229	99.9424	98.0208	28.8432	0.019216	0.019216	1.94081	67.5969	0
M02533_2.00_shift6 (lin-54) 
; positions_6nt_m2 versus M02533_2.00 (lin-54); m=20/49; ncol2=9; w=0; offset=0; strand=D; shift=6; score=0.700713; ------mrktyrway-
; cor=; Ncor=
a	0	0	0	0	0	0	27.1308	28.8149	22.4414	16.3222	19.0314	43.0856	46.18	50.217	24.0171	0
c	0	0	0	0	0	0	26.5936	23.1245	18.0096	23.3951	37.1918	11.7422	15.9993	13.1491	27.9039	0
g	0	0	0	0	0	0	24.0628	27.1368	25.0508	20.1364	17.5682	37.8333	8.958	23.4848	18.1518	0
t	0	0	0	0	0	0	22.2128	20.9239	34.4982	40.1462	26.2086	7.3389	28.8626	13.1491	29.9272	0
M01319_2.00_shift8 (lin-54) 
; positions_6nt_m2 versus M01319_2.00 (lin-54); m=21/49; ncol2=8; w=0; offset=2; strand=D; shift=8; score=0.689236; --------ttyrAAww
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	15.8993	17.8907	9.67808	64.0051	84.335	74.636	30.6449	25.3512
c	0	0	0	0	0	0	0	0	16.7145	14.7949	41.2588	4.17437	2.59814	4.10671	23.6288	20.1424
g	0	0	0	0	0	0	0	0	15.1239	12.4819	9.02378	31.784	3.43768	8.02549	4.35998	19.942
t	0	0	0	0	0	0	0	0	52.2623	54.8325	40.0394	0.0364783	9.62917	13.2318	41.3663	34.5645
M09406_2.00_rc_shift6 (M09406_2.00_rc) 
; positions_6nt_m2 versus M09406_2.00_rc; m=22/49; ncol2=11; w=0; offset=0; strand=R; shift=6; score=0.678524; ------aswTCAAAGg
; cor=; Ncor=
a	0	0	0	0	0	0	67.8	4.8	57.8	6.8	4	97.4	92.4	96.4	11.6	24.8
c	0	0	0	0	0	0	6	47.6	1.2	1.8	77.6	1.2	1	0	5.4	21
g	0	0	0	0	0	0	11.4	38	0.4	1.4	14.4	0	6.6	2.6	81.6	42
t	0	0	0	0	0	0	14.8	9.6	40.6	90	4	1.4	0	1	1.4	12.2
M02524_2.00_shift6 (lin-54) 
; positions_6nt_m2 versus M02524_2.00 (lin-54); m=23/49; ncol2=9; w=0; offset=0; strand=D; shift=6; score=0.678364; ------AATTTAAAw-
; cor=; Ncor=
a	0	0	0	0	0	0	99.0132	82.947	0.165563	0.165563	0.165563	82.947	99.4048	99.2574	66.1184	0
c	0	0	0	0	0	0	0.328947	0.165563	0.165563	0.165563	16.7219	0.165563	0.198413	0.247525	0.328947	0
g	0	0	0	0	0	0	0.328947	0.165563	0.165563	0.165563	0.165563	16.7219	0.198413	0.247525	0.328947	0
t	0	0	0	0	0	0	0.328947	16.7219	99.5033	99.5033	82.947	0.165563	0.198413	0.247525	33.2237	0
M06451_2.00_shift7 (M06451_2.00) 
; positions_6nt_m2 versus M06451_2.00; m=24/49; ncol2=8; w=0; offset=1; strand=D; shift=7; score=0.661002; -------kWTCAAAr-
; cor=; Ncor=
a	0	0	0	0	0	0	0	16	68	12	12	92	88	80	32	0
c	0	0	0	0	0	0	0	12	0	20	80	0	4	0	12	0
g	0	0	0	0	0	0	0	44	0	0	8	0	0	12	40	0
t	0	0	0	0	0	0	0	28	32	68	0	8	8	8	16	0
M02520_2.00_rc_shift7 (lin-54_rc) 
; positions_6nt_m2 versus M02520_2.00_rc (lin-54_rc); m=25/49; ncol2=8; w=0; offset=1; strand=R; shift=7; score=0.647805; -------rTTTAAAt-
; cor=; Ncor=
a	0	0	0	0	0	0	0	39.881	0.198413	0.198413	0.198413	79.5635	99.4048	99.4048	25	0
c	0	0	0	0	0	0	0	0.198413	0.198413	0.198413	20.0397	0.198413	0.198413	0.198413	25	0
g	0	0	0	0	0	0	0	39.881	0.198413	0.198413	0.198413	20.0397	0.198413	0.198413	0.247525	0
t	0	0	0	0	0	0	0	20.0397	99.4048	99.4048	79.5635	0.198413	0.198413	0.198413	49.7525	0
M02530_2.00_shift8 (lin-54) 
; positions_6nt_m2 versus M02530_2.00 (lin-54); m=26/49; ncol2=8; w=0; offset=2; strand=D; shift=8; score=0.645842; --------ttyrAAww
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	20.9734	17.0043	11.8837	65.3952	80.915	70.7012	26.6361	25.5167
c	0	0	0	0	0	0	0	0	22.2703	21.834	41.895	2.946	3.1062	5.52047	23.1563	24.0308
g	0	0	0	0	0	0	0	0	21.8294	20.9778	13.2655	27.9509	6.07025	8.92148	8.43396	21.1013
t	0	0	0	0	0	0	0	0	34.9269	40.1839	32.9558	3.70784	9.90856	14.8569	41.7737	29.3512
M02646_2.00_shift7 (M02646_2.00) 
; positions_6nt_m2 versus M02646_2.00; m=27/49; ncol2=9; w=0; offset=1; strand=D; shift=7; score=0.639442; -------sATcAAAgg
; cor=; Ncor=
a	0	0	0	0	0	0	0	5.6	78.2	9.9	11.2	92.9	91.5	83.7	15.9	23.8
c	0	0	0	0	0	0	0	48.1	1.7	2.2	67.5	1	2.9	0.3	14.3	22.8
g	0	0	0	0	0	0	0	36.6	0	0	16.5	0.4	3.2	10.3	66.2	33.7
t	0	0	0	0	0	0	0	9.7	19.4	87.6	4.8	5.8	2.4	5.6	3.6	19.7
M05777_2.00_shift6 (M05777_2.00) 
; positions_6nt_m2 versus M05777_2.00; m=28/49; ncol2=9; w=0; offset=0; strand=D; shift=6; score=0.631286; ------AsATCAAAG-
; cor=; Ncor=
a	0	0	0	0	0	0	69.7396	0.817057	81.6304	1.38416	2.069	99.5875	99.3258	91.2306	7.84809	0
c	0	0	0	0	0	0	2.47122	48.475	0	0	85.4335	0	0.102845	0	16.4949	0
g	0	0	0	0	0	0	17.459	48.8164	0	0	12.301	0	0.411382	1.47468	73.0856	0
t	0	0	0	0	0	0	10.3302	1.89154	18.3696	98.6158	0.19658	0.412466	0.159982	7.29467	2.57137	0
M00207_2.00_shift7 (M00207_2.00) 
; positions_6nt_m2 versus M00207_2.00; m=29/49; ncol2=8; w=0; offset=1; strand=D; shift=7; score=0.60867; -------satcaaag-
; cor=; Ncor=
a	0	0	0	0	0	0	0	19.4088	42.1098	24.8778	18.2174	65.195	61.9209	49.3892	24.537	0
c	0	0	0	0	0	0	0	29.2455	16.7815	13.929	43.9204	3.18159	10.1336	10.802	21.7624	0
g	0	0	0	0	0	0	0	32.3213	17.9983	15.8628	21.3784	10.5633	13.2747	16.9409	35.5231	0
t	0	0	0	0	0	0	0	19.0245	23.1103	45.3303	16.4838	21.0601	14.6708	22.8679	18.1775	0
M06243_2.00_shift7 (ceh-20,ceh-40,ceh-60) 
; positions_6nt_m2 versus M06243_2.00 (ceh-20,ceh-40,ceh-60); m=30/49; ncol2=8; w=0; offset=1; strand=D; shift=7; score=0.600629; -------yRTCAAAa-
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	29.4118	0	0	100	100	82.3529	29.4118	0
c	0	0	0	0	0	0	0	35.2941	0	0	100	0	0	11.7647	23.5294	0
g	0	0	0	0	0	0	0	0	70.5882	0	0	0	0	0	23.5294	0
t	0	0	0	0	0	0	0	64.7059	0	100	0	0	0	5.88235	23.5294	0
M06487_2.00_shift7 (ceh-20,ceh-40,ceh-60) 
; positions_6nt_m2 versus M06487_2.00 (ceh-20,ceh-40,ceh-60); m=31/49; ncol2=8; w=0; offset=1; strand=D; shift=7; score=0.600629; -------yRTCAAAa-
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	29.4118	0	0	100	100	82.3529	29.4118	0
c	0	0	0	0	0	0	0	35.2941	0	0	100	0	0	11.7647	23.5294	0
g	0	0	0	0	0	0	0	0	70.5882	0	0	0	0	0	23.5294	0
t	0	0	0	0	0	0	0	64.7059	0	100	0	0	0	5.88235	23.5294	0
M06246_2.00_rc_shift7 (ceh-20,ceh-40,ceh-60_rc) 
; positions_6nt_m2 versus M06246_2.00_rc (ceh-20,ceh-40,ceh-60_rc); m=32/49; ncol2=8; w=0; offset=1; strand=R; shift=7; score=0.568105; -------yrTCAaaw-
; cor=; Ncor=
a	0	0	0	0	0	0	0	8.72027	36.5798	0	0	100	61.2684	46.2061	30.1246	0
c	0	0	0	0	0	0	0	29.3318	0	0	100	0	19.026	16.1948	23.4428	0
g	0	0	0	0	0	0	0	2.94451	57.1914	0	0	0	4.53001	19.479	17.214	0
t	0	0	0	0	0	0	0	59.0034	6.22877	100	0	0	15.1755	18.12	29.2186	0
M09395_2.00_rc_shift5 (M09395_2.00_rc) 
; positions_6nt_m2 versus M09395_2.00_rc; m=33/49; ncol2=13; w=-1; offset=-1; strand=R; shift=5; score=0.564787; -----vaswTCAAAGr
; cor=; Ncor=
a	0	0	0	0	0	34.6	67.6	4.2	61.2	6.8	6.4	98	93.6	94.6	12.6	27
c	0	0	0	0	0	27.4	5.4	49.6	1.2	1.8	72	1	1.2	0.2	4.8	21.2
g	0	0	0	0	0	30.8	9.8	38.2	0.6	2	17.4	0	5.2	4.6	80.4	40.8
t	0	0	0	0	0	7.2	17.2	8	37	89.4	4.2	1	0	0.6	2.2	11
M07296_2.00_shift1 (lin-54) 
; positions_6nt_m2 versus M07296_2.00 (lin-54); m=34/49; ncol2=15; w=-5; offset=-5; strand=D; shift=1; score=0.561794; -wttmAAATTyAAAwt
; cor=; Ncor=
a	0	37.5	24	22.8333	36.3333	83.1667	80.6667	77.6667	0	0.1667	0	79.8333	100	100	28.1667	23
c	0	5.3333	13.5	18.3333	26	2.6667	1	0	0.1667	0	53	0	0	0	16.3333	19.3333
g	0	6.3333	0	7.6667	13.6667	13.1667	3	4	0.1667	0	0	20.1667	0	0	1.5	13.5
t	0	50.8333	62.5	51.1667	24	1	15.3333	18.3333	99.6667	99.8333	47	0	0	0	54	44.1667
M00193_2.00_rc_shift5 (M00193_2.00_rc) 
; positions_6nt_m2 versus M00193_2.00_rc; m=35/49; ncol2=9; w=-1; offset=-1; strand=R; shift=5; score=0.558414; -----wasawcaaa--
; cor=; Ncor=
a	0	0	0	0	0	27.8784	33.5052	16.9181	39.7157	26.6105	16.3761	53.4388	48.6755	51.2805	0	0
c	0	0	0	0	0	24.2363	21.7954	32.4073	15.9866	16.6316	38.6994	10.8975	16.2027	10.5625	0	0
g	0	0	0	0	0	22.1503	22.0145	30.2164	19.7223	20.1118	23.4724	19.078	15.7238	20.0316	0	0
t	0	0	0	0	0	25.735	22.6849	20.4582	24.5754	36.6461	21.4521	16.5856	19.3981	18.1253	0	0
M05890_2.00_shift4 (M05890_2.00) 
; positions_6nt_m2 versus M05890_2.00; m=36/49; ncol2=13; w=-2; offset=-2; strand=D; shift=4; score=0.545065; ----aaAsATCAAAgr
; cor=; Ncor=
a	0	0	0	0	31.6	36.7	69.8	2.4	77.7	5.7	4.3	95	91.4	88.1	11.1	28
c	0	0	0	0	23.5	20.4	6.1	43.2	1	0.7	86.7	0.9	3	1.5	19.4	18.3
g	0	0	0	0	22.2	19.8	10.4	49.7	1.4	0.8	6	0.4	3.1	3.6	66.3	38.5
t	0	0	0	0	22.7	23.1	13.8	4.7	19.9	92.9	3	3.7	2.5	6.8	3.2	15.2
M07297_2.00_shift6 (lin-54) 
; positions_6nt_m2 versus M07297_2.00 (lin-54); m=37/49; ncol2=15; w=0; offset=0; strand=D; shift=6; score=0.524724; ------awTTyrAATT
; cor=; Ncor=
a	0	0	0	0	0	0	51.8333	58.1667	0	0	0	65	100	99.6667	23.3333	5.5
c	0	0	0	0	0	0	9.5	0.1667	0	0	45.1667	0	0	0	3.3333	4.5
g	0	0	0	0	0	0	19.3333	10	0	0	0.3333	35	0	0.1667	0	1.6667
t	0	0	0	0	0	0	19.3333	31.6667	100	100	54.5	0	0	0.1667	73.3333	88.3333
M09328_2.00_shift5 (fax-1) 
; positions_6nt_m2 versus M09328_2.00 (fax-1); m=38/49; ncol2=14; w=-1; offset=-1; strand=D; shift=5; score=0.523662; -----aAAGTCAAAAg
; cor=; Ncor=
a	0	0	0	0	0	50.1394	82.8067	78.5316	6.87732	6.87732	6.87732	93.1227	79.368	96.5613	81.9703	24.9071
c	0	0	0	0	0	15.474	6.87732	3.43866	6.87732	0	89.684	0	13.7546	0	0	6.87732
g	0	0	0	0	0	18.9126	6.87732	14.5911	72.4907	10.316	3.43866	3.43866	6.87732	0	14.5911	61.3383
t	0	0	0	0	0	15.474	3.43866	3.43866	13.7546	82.8067	0	3.43866	0	3.43866	3.43866	6.87732
M05895_2.00_shift8 (M05895_2.00) 
; positions_6nt_m2 versus M05895_2.00; m=39/49; ncol2=10; w=0; offset=2; strand=D; shift=8; score=0.502918; --------WTCAAAGg
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	74.3	3.2	4.6	98.4	98.5	96.3	8.8	23.2
c	0	0	0	0	0	0	0	0	0.3	0.5	84.9	0.2	0.5	0.6	12.9	18.9
g	0	0	0	0	0	0	0	0	0.3	0.2	8.7	0.2	0.4	1.8	77.3	44.6
t	0	0	0	0	0	0	0	0	25	96.2	1.8	1.2	0.6	1.3	0.9	13.4
M07301_2.00_shift1 (lin-54) 
; positions_6nt_m2 versus M07301_2.00 (lin-54); m=40/49; ncol2=14; w=-5; offset=-5; strand=D; shift=1; score=0.479543; -TTyaAAATTyRAAw-
; cor=; Ncor=
a	0	19.6667	11.1667	12.1667	49.5	89	93.6667	79.3333	1.1667	0	0	68.8333	100	100	29.3333	0
c	0	6.8333	7.1667	27.5	20.1667	1.5	2.1667	0	0	0	47.8333	0	0	0	13.1667	0
g	0	3.5	0.5	7.1667	19.3333	6.8333	1.3333	4.6667	0.6667	0	0	31.1667	0	0	0.5	0
t	0	70	81.1667	53.1667	11	2.6667	2.8333	16	98.1667	100	52.1667	0	0	0	57	0
M07299_2.00_shift6 (lin-54) 
; positions_6nt_m2 versus M07299_2.00 (lin-54); m=41/49; ncol2=15; w=0; offset=0; strand=D; shift=6; score=0.473386; ------wwwTwaAAAT
; cor=; Ncor=
a	0	0	0	0	0	0	51.5152	36.7424	26.8939	20.4545	32.5758	60.6061	86.3636	87.8788	92.4242	0
c	0	0	0	0	0	0	5.6818	3.4091	4.1667	2.2727	14.3939	9.8485	0	0.3788	0	3.0303
g	0	0	0	0	0	0	10.6061	10.6061	3.0303	3.4091	5.6818	15.5303	13.2576	6.0606	0	1.1364
t	0	0	0	0	0	0	32.197	49.2424	65.9091	73.8636	47.3485	14.0152	0.3788	5.6818	7.5758	95.8333
M00654_2.00_rc_shift9 (mab-23_rc) 
; positions_6nt_m2 versus M00654_2.00_rc (mab-23_rc); m=42/49; ncol2=8; w=0; offset=3; strand=R; shift=9; score=0.470973; ---------ryraaww
; cor=; Ncor=
a	0	0	0	0	0	0	0	0	0	27.2171	24.6535	60.2373	53.36	54.9449	45.2693	27.4258
c	0	0	0	0	0	0	0	0	0	23.8992	32.2952	5.09517	20.0266	10.1384	8.78133	11.7222
g	0	0	0	0	0	0	0	0	0	26.1499	11.0775	27.0664	15.2879	11.8975	11.7356	21.1467
t	0	0	0	0	0	0	0	0	0	22.7337	31.9738	7.6011	11.3255	23.0192	34.2138	39.7053
M07295_2.00_shift0 (lin-54) 
; positions_6nt_m2 versus M07295_2.00 (lin-54); m=43/49; ncol2=15; w=-6; offset=-6; strand=D; shift=0; score=0.469208; WTwaAAwATTyAAAw-
; cor=; Ncor=
a	26.2982	24.1206	39.6985	60.9715	77.5544	93.6348	56.2814	82.0771	0	0	0	86.2647	85.7621	100	54.9414	0
c	2.0101	3.3501	18.7605	8.2077	10.8878	0	2.1776	0	0	0	32.4958	0	14.2379	0	5.5276	0
g	3.1826	1.34	2.6801	7.5377	3.0151	5.0251	16.0804	2.6801	0	0	0	13.7353	0	0	0	0
t	68.5092	71.1893	38.861	23.2831	8.5427	1.34	25.4606	15.2429	100	100	67.5042	0	0	0	39.531	0
M06541_2.00_rc_shift5 (M06541_2.00_rc) 
; positions_6nt_m2 versus M06541_2.00_rc; m=44/49; ncol2=8; w=-1; offset=-1; strand=R; shift=5; score=0.463009; -----TWATTmRw---
; cor=; Ncor=
a	0	0	0	0	0	0	69.2308	76.9231	0	11.5385	50	73.0769	53.8462	0	0	0
c	0	0	0	0	0	15.3846	3.84615	11.5385	0	7.69231	26.9231	0	7.69231	0	0	0
g	0	0	0	0	0	0	0	11.5385	0	0	23.0769	26.9231	11.5385	0	0	0
t	0	0	0	0	0	84.6154	26.9231	0	100	80.7692	0	0	26.9231	0	0	0
M06358_2.00_rc_shift5 (M06358_2.00_rc) 
; positions_6nt_m2 versus M06358_2.00_rc; m=45/49; ncol2=8; w=-1; offset=-1; strand=R; shift=5; score=0.463009; -----TWATTmRw---
; cor=; Ncor=
a	0	0	0	0	0	0	69.2308	76.9231	0	11.5385	50	73.0769	53.8462	0	0	0
c	0	0	0	0	0	15.3846	3.84615	11.5385	0	7.69231	26.9231	0	7.69231	0	0	0
g	0	0	0	0	0	0	0	11.5385	0	0	23.0769	26.9231	11.5385	0	0	0
t	0	0	0	0	0	84.6154	26.9231	0	100	80.7692	0	0	26.9231	0	0	0
M06359_2.00_rc_shift5 (M06359_2.00_rc) 
; positions_6nt_m2 versus M06359_2.00_rc; m=46/49; ncol2=8; w=-1; offset=-1; strand=R; shift=5; score=0.461122; -----YwATTvra---
; cor=; Ncor=
a	0	0	0	0	0	0	55.5985	74.1313	0	6.27413	39.4788	57.3359	47.4903	0	0	0
c	0	0	0	0	0	27.7027	15.8301	11.7761	0	13.61	28.668	2.79923	13.9961	0	0	0
g	0	0	0	0	0	0	1.35135	13.417	0	0	29.7297	34.0734	17.8571	0	0	0
t	0	0	0	0	0	72.2973	27.2201	0.675676	100	80.1158	2.12355	5.79151	20.6564	0	0	0
M07300_2.00_shift0 (lin-54) 
; positions_6nt_m2 versus M07300_2.00 (lin-54); m=47/49; ncol2=15; w=-6; offset=-6; strand=D; shift=0; score=0.457523; wTTyaAAATTyRAAw-
; cor=; Ncor=
a	42.9048	22.5376	10.0167	9.015	48.7479	93.3222	92.4875	85.8097	1.6694	0	0	72.621	100	100	29.7162	0
c	8.1803	3.8397	6.8447	28.8815	22.0367	1.0017	2.3372	0	0.1669	0	53.0885	0.1669	0	0	15.5259	0
g	10.1836	4.6745	0.1669	6.8447	17.8631	4.3406	0.1669	2.3372	1.1686	0	0	27.212	0	0	1.6694	0
t	38.7312	68.9482	82.9716	55.2588	11.3523	1.3356	5.0083	11.8531	96.995	100	46.9115	0	0	0	53.0885	0
M07298_2.00_shift0 (lin-54) 
; positions_6nt_m2 versus M07298_2.00 (lin-54); m=48/49; ncol2=15; w=-6; offset=-6; strand=D; shift=0; score=0.445102; wTwwAAAATTYAAAw-
; cor=; Ncor=
a	32	15.8333	27.8333	36.5	73.5	90.5	77.6667	80.6667	0	0	0	80.3333	92.5	99.8333	44.6667	0
c	2.8333	2.6667	6.1667	11.5	9	0	0.5	0	0	0	28.1667	0	7.5	0	2.6667	0
g	4.5	1	1.1667	7.6667	11.6667	7.1667	11	3.8333	0	0	0	19.6667	0	0.1667	0	0
t	60.6667	80.5	64.8333	44.3333	5.8333	2.3333	10.8333	15.5	100	100	71.8333	0	0	0	52.6667	0
M05877_2.00_shift4 (nhr-91) 
; positions_6nt_m2 versus M05877_2.00 (nhr-91); m=49/49; ncol2=8; w=-2; offset=-2; strand=D; shift=4; score=0.406566; ----yrrGTTCA----
; cor=; Ncor=
a	0	0	0	0	22.2	35.6	55.5	2.4	1.7	6.1	5.5	88.6	0	0	0	0
c	0	0	0	0	28	4.5	2.4	2.5	2.3	3.1	74.3	1.9	0	0	0	0
g	0	0	0	0	4.3	56.7	38.6	91.9	7	8.2	2.8	7.6	0	0	0	0
t	0	0	0	0	45.5	3.2	3.4	3.2	89	82.7	17.4	1.9	0	0	0	0