One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2026/04/21/peak-motifs.2026-04-21.024047_2026-04-21.024047_gRzMOf/results/discovered_motifs/peak-motifs_motifs_discovered.tf -format2 tf -file2 $RSAT/public_html/motif_databases/cisBP2/cisBP_Caenorhabditis_elegans_2019.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/04/21/peak-motifs.2026-04-21.024047_2026-04-21.024047_gRzMOf/results/discovered_vs_db/peak-motifs_motifs_vs_db_cisBP_Caenorhabditis_elegans.tab

One-to-n matrix alignment; reference matrix: positions_6nt_m2_shift6 ; 50 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
positions_6nt_m2_shift6 (positions_6nt_m2)
; positions_6nt_m2; m=0 (reference); ncol1=10; shift=6; ncol=16; ------wrTTCAAAaw ; Alignment reference a 0 0 0 0 0 0 44 46 0 0 0 142 142 142 94 58 c 0 0 0 0 0 0 30 24 0 0 142 0 0 0 15 13 g 0 0 0 0 0 0 8 40 0 0 0 0 0 0 7 23 t 0 0 0 0 0 0 60 32 142 142 0 0 0 0 26 48

M02523_2.00_shift6 (lin-54)
; positions_6nt_m2 versus M02523_2.00 (lin-54); m=1/49; ncol2=10; w=0; offset=0; strand=D; shift=6; score=0.90963; ------aaTTCAAAyt ; cor=; Ncor= a 0 0 0 0 0 0 32.4236 63.7246 0.00966714 0.00966714 0.00966714 90.5598 99.971 99.971 13.0179 22.8089 c 0 0 0 0 0 0 22.5255 2.20081 0.00966714 0.00966714 77.5533 0.00966714 0.00966714 0.00966714 25.1034 22.8089 g 0 0 0 0 0 0 22.5255 22.5389 0.00966714 0.00966714 0.00966714 9.42084 0.00966714 0.00966714 2.4842 22.8089 t 0 0 0 0 0 0 22.5255 11.5357 99.971 99.971 22.4274 0 0 0 59.3945 31.5734

M01322_2.00_shift6 (lin-54)
; positions_6nt_m2 versus M01322_2.00 (lin-54); m=2/49; ncol2=9; w=0; offset=0; strand=D; shift=6; score=0.841847; ------wwTTyAAAw- ; cor=; Ncor= a 0 0 0 0 0 0 34.0772 41.4312 5.74481 6.17667 2.49798 81.4779 89.5954 88.3237 30.3643 0 c 0 0 0 0 0 0 13.4453 5.89459 5.74481 3.59944 60.672 1.76885 1.47006 2.53707 24.6128 0 g 0 0 0 0 0 0 24.0138 17.014 3.02919 4.53026 0.0306685 8.50226 3.2069 5.16037 7.56301 0 t 0 0 0 0 0 0 28.4637 35.6602 85.4812 85.6936 36.7994 8.25098 5.72764 3.97891 37.4598 0

M01321_2.00_shift6 (lin-54)
; positions_6nt_m2 versus M01321_2.00 (lin-54); m=3/49; ncol2=9; w=0; offset=0; strand=D; shift=6; score=0.821545; ------aaTTyAAAh- ; cor=; Ncor= a 0 0 0 0 0 0 37.6035 45.4381 13.7399 10.9833 1.21372 71.348 85.5693 78.6029 27.9467 0 c 0 0 0 0 0 0 19.4354 10.7656 8.67375 5.56434 53.7147 2.11186 1.53622 5.49813 28.2276 0 g 0 0 0 0 0 0 21.2657 21.6792 6.75512 4.69444 5.27874 24.2294 3.31788 10.1189 12.9397 0 t 0 0 0 0 0 0 21.6953 22.1171 70.8313 78.7579 39.7928 2.31074 9.57663 5.78003 30.8859 0

M02527_2.00_shift6 (lin-54)
; positions_6nt_m2 versus M02527_2.00 (lin-54); m=4/49; ncol2=9; w=0; offset=0; strand=D; shift=6; score=0.808289; ------aATTyAAAw- ; cor=; Ncor= a 0 0 0 0 0 0 34.9676 68.5347 0.0205578 0.0205578 0.0205578 78.7598 99.9383 99.9383 28.5406 0 c 0 0 0 0 0 0 15.8972 0.0205578 0.0205578 0.0205578 56.1674 0.0205578 0.0205578 0.0205578 21.1983 0 g 0 0 0 0 0 0 24.868 21.0663 0.0205578 0.0205578 0.0205578 21.199 0.0205578 0.0205578 9.12334 0 t 0 0 0 0 0 0 24.2672 10.3784 99.9383 99.9383 43.7915 0.0205578 0.0205578 0.0205578 41.1378 0

M02528_2.00_shift6 (lin-54)
; positions_6nt_m2 versus M02528_2.00 (lin-54); m=5/49; ncol2=10; w=0; offset=0; strand=D; shift=6; score=0.806824; ------awttyraawt ; cor=; Ncor= a 0 0 0 0 0 0 41.158 35.0115 20.9094 12.8158 17.2003 46.8075 60.2825 59.6494 30.5028 21.3133 c 0 0 0 0 0 0 20.1452 15.2248 10.7967 12.3651 27.9928 7.99937 14.5366 8.64454 19.2609 17.3835 g 0 0 0 0 0 0 17.3835 19.2609 8.64454 14.5366 7.99937 27.9928 12.3651 10.7967 15.2248 20.1452 t 0 0 0 0 0 0 21.3133 30.5028 59.6494 60.2825 46.8075 17.2003 12.8158 20.9094 35.0115 41.158

M02521_2.00_shift6 (lin-54)
; positions_6nt_m2 versus M02521_2.00 (lin-54); m=6/49; ncol2=10; w=0; offset=0; strand=D; shift=6; score=0.802361; ------awTTyrAAwt ; cor=; Ncor= a 0 0 0 0 0 0 52.2758 50.4019 11.6979 6.03924 2.0663 51.2477 87.5204 73.9188 29.3858 17.8378 c 0 0 0 0 0 0 12.2074 7.00675 9.06232 4.24737 42.2735 4.4125 2.19297 5.32101 13.2055 17.679 g 0 0 0 0 0 0 17.679 13.2055 5.32101 2.19297 4.4125 42.2735 4.24737 9.06232 7.00675 12.2074 t 0 0 0 0 0 0 17.8378 29.3858 73.9188 87.5204 51.2477 2.0663 6.03924 11.6979 50.4019 52.2758

M02525_2.00_shift6 (lin-54)
; positions_6nt_m2 versus M02525_2.00 (lin-54); m=7/49; ncol2=10; w=0; offset=0; strand=D; shift=6; score=0.773355; ------mrTtyraAyk ; cor=; Ncor= a 0 0 0 0 0 0 29.3063 45.7419 6.13136 10.6775 5.62476 50.8994 60.0005 75.589 12.2411 23.8592 c 0 0 0 0 0 0 27.0264 14.3313 12.4657 16.0206 32.9219 10.554 13.3014 5.81391 27.6857 19.808 g 0 0 0 0 0 0 19.808 27.6857 5.81391 13.3014 10.554 32.9219 16.0206 12.4657 14.3313 27.0264 t 0 0 0 0 0 0 23.8592 12.2411 75.589 60.0005 50.8994 5.62476 10.6775 6.13136 45.7419 29.3063

M02535_2.00_shift6 (lin-54)
; positions_6nt_m2 versus M02535_2.00 (lin-54); m=8/49; ncol2=10; w=0; offset=0; strand=D; shift=6; score=0.771397; ------awttyraawt ; cor=; Ncor= a 0 0 0 0 0 0 54.2652 27.9593 9.65347 20.2572 8.44571 43.2293 58.7752 60.8045 38.1215 22.5834 c 0 0 0 0 0 0 11.7995 14.3987 17.5727 12.377 28.0504 20.2746 8.59055 11.9694 19.5206 11.3519 g 0 0 0 0 0 0 11.3519 19.5206 11.9694 8.59055 20.2746 28.0504 12.377 17.5727 14.3987 11.7995 t 0 0 0 0 0 0 22.5834 38.1215 60.8045 58.7752 43.2293 8.44571 20.2572 9.65347 27.9593 54.2652

M01320_2.00_shift6 (lin-54)
; positions_6nt_m2 versus M01320_2.00 (lin-54); m=9/49; ncol2=9; w=0; offset=0; strand=D; shift=6; score=0.769129; ------rrttyraah- ; cor=; Ncor= a 0 0 0 0 0 0 29.025 31.6363 18.4777 19.9513 7.82148 53.1314 61.4935 63.3081 25.6334 0 c 0 0 0 0 0 0 24.9821 20.9954 16.3883 13.1089 48.7582 3.79152 6.22723 7.75248 29.1921 0 g 0 0 0 0 0 0 25.7429 26.1619 21.4681 21.185 12.6401 36.6997 11.8098 15.7685 15.3928 0 t 0 0 0 0 0 0 20.2501 21.2064 43.6659 45.7547 30.7802 6.37744 20.4694 13.1709 29.7818 0

M00610_2.00_shift6 (die-1)
; positions_6nt_m2 versus M00610_2.00 (die-1); m=10/49; ncol2=10; w=0; offset=0; strand=D; shift=6; score=0.753256; ------awTTTAAAma ; cor=; Ncor= a 0 0 0 0 0 0 59.2549 41.96 0.0134115 0.0134115 0.0134115 99.9598 99.9598 99.9598 41.6613 30.3954 c 0 0 0 0 0 0 11.0035 14.4385 0.0134115 0.0134115 0.0134115 0.0134115 0.0134115 0.0134115 30.3189 23.2015 g 0 0 0 0 0 0 18.7381 18.1393 0.0134115 0.0134115 0.0134115 0.0134115 0.0134115 0.0134115 14.0099 23.2015 t 0 0 0 0 0 0 11.0035 25.4622 99.9598 99.9598 99.9598 0.0134115 0.0134115 0.0134115 14.0099 23.2015

M00200_2.00_shift6 (M00200_2.00)
; positions_6nt_m2 versus M00200_2.00; m=11/49; ncol2=10; w=0; offset=0; strand=D; shift=6; score=0.751765; ------aswTcAAAgr ; cor=; Ncor= a 0 0 0 0 0 0 48.7159 10.3241 63.9521 11.8677 10.7632 87.4585 80.9823 75.8453 18.2254 28.4337 c 0 0 0 0 0 0 13.4101 36.7628 4.17091 3.50372 67.7712 1.71801 5.89574 1.40312 17.5107 18.3124 g 0 0 0 0 0 0 19.221 41.0375 2.26627 1.21388 13.4118 1.32467 8.62126 9.96118 57.5592 40.3494 t 0 0 0 0 0 0 18.653 11.8756 29.6107 83.4147 8.05374 9.49879 4.50069 12.7904 6.70473 12.9045

M00198_2.00_shift6 (M00198_2.00)
; positions_6nt_m2 versus M00198_2.00; m=12/49; ncol2=10; w=0; offset=0; strand=D; shift=6; score=0.749759; ------aswTcAAAgr ; cor=; Ncor= a 0 0 0 0 0 0 48.7867 10.5157 63.7879 12.7896 11.7054 87.5401 81.883 72.8316 17.9802 26.7968 c 0 0 0 0 0 0 12.903 36.7034 4.46185 3.66428 66.6899 1.39389 4.64268 1.97023 17.8013 18.6955 g 0 0 0 0 0 0 19.4424 40.5635 2.21569 1.38907 13.5998 1.36629 8.54453 10.7849 56.2199 40.3779 t 0 0 0 0 0 0 18.8678 12.2175 29.5346 82.157 8.0049 9.69972 4.92977 14.4133 7.99863 14.1298

M01087_2.00_shift5 (lin-54)
; positions_6nt_m2 versus M01087_2.00 (lin-54); m=13/49; ncol2=10; w=-1; offset=-1; strand=D; shift=5; score=0.749331; -----aawTTyAAAh- ; cor=; Ncor= a 0 0 0 0 0 36.3763 43.5854 43.5354 10.4843 6.06454 0.312244 75.8381 89.9183 83.0968 29.3712 0 c 0 0 0 0 0 19.3737 14.9502 8.03314 8.16517 5.16786 53.3049 0.0142443 2.31382 3.85745 25.5341 0 g 0 0 0 0 0 19.3737 17.5442 18.0578 6.1711 4.62955 7.28654 20.0574 3.15473 6.35986 6.61947 0 t 0 0 0 0 0 24.8763 23.9202 30.3737 75.1794 84.1381 39.0963 4.09023 4.61311 6.68593 38.4752 0

M02526_2.00_shift7 (lin-54)
; positions_6nt_m2 versus M02526_2.00 (lin-54); m=14/49; ncol2=8; w=0; offset=1; strand=D; shift=7; score=0.743688; -------wttyAAAw- ; cor=; Ncor= a 0 0 0 0 0 0 0 36.2822 14.2305 14.9465 7.21233 72.6622 79.8606 74.0348 29.0887 0 c 0 0 0 0 0 0 0 14.0318 15.1105 11.0726 52.2371 0.0422488 3.85851 6.01667 24.7877 0 g 0 0 0 0 0 0 0 23.6019 11.1941 8.97528 8.54881 23.0075 3.59766 8.53807 10.5946 0 t 0 0 0 0 0 0 0 26.0841 59.4649 65.0057 32.0018 4.288 12.6833 11.4105 35.529 0

M00712_2.00_rc_shift6 (pop-1_rc)
; positions_6nt_m2 versus M00712_2.00_rc (pop-1_rc); m=15/49; ncol2=10; w=0; offset=0; strand=R; shift=6; score=0.741395; ------aswwcaaarr ; cor=; Ncor= a 0 0 0 0 0 0 35.2953 23.4341 29.2826 33.2905 8.03659 67.0533 56.7128 54.1657 30.8356 30.6823 c 0 0 0 0 0 0 22.2814 28.3376 22.3537 14.0873 45.7872 3.0207 15.7683 11.8467 15.7788 17.008 g 0 0 0 0 0 0 22.0597 26.1589 22.1313 19.9908 22.511 10.1299 8.82864 16.3144 37.2879 34.25 t 0 0 0 0 0 0 20.3636 22.0694 26.2324 32.6313 23.6652 19.7962 18.6902 17.6732 16.0976 18.0597

M02531_2.00_shift5 (lin-54)
; positions_6nt_m2 versus M02531_2.00 (lin-54); m=16/49; ncol2=10; w=-1; offset=-1; strand=D; shift=5; score=0.735917; -----wwwttyrAAh- ; cor=; Ncor= a 0 0 0 0 0 32.9088 34.1064 38.0265 18.2256 18.4768 7.08535 67.8507 77.3469 72.7567 29.9483 0 c 0 0 0 0 0 21.1945 19.0961 14.1297 14.0529 10.6602 46.4339 0.746253 3.62662 6.40527 26.0358 0 g 0 0 0 0 0 20.7748 21.5308 22.6075 14.0529 12.5098 9.95455 25.721 7.91137 10.9915 10.5854 0 t 0 0 0 0 0 25.1219 25.2666 25.2363 53.6686 58.3532 36.5262 5.68203 11.1151 9.84655 33.4306 0

M02534_2.00_shift5 (lin-54)
; positions_6nt_m2 versus M02534_2.00 (lin-54); m=17/49; ncol2=10; w=-1; offset=-1; strand=D; shift=5; score=0.734091; -----wwwttyAAAh- ; cor=; Ncor= a 0 0 0 0 0 32.5158 35.8359 37.6331 18.4463 19.8756 7.17216 70.0958 75.2532 74.6615 29.7928 0 c 0 0 0 0 0 21.796 18.896 14.7005 15.5625 11.1283 45.1598 0.22088 4.62214 6.00723 26.1609 0 g 0 0 0 0 0 19.3313 20.2661 21.9306 13.8027 13.323 13.8766 24.0435 8.17318 10.0038 10.1175 0 t 0 0 0 0 0 26.3568 25.0019 25.7358 52.1885 55.673 33.7914 5.63988 11.9515 9.32748 33.9288 0

M02522_2.00_shift7 (lin-54)
; positions_6nt_m2 versus M02522_2.00 (lin-54); m=18/49; ncol2=8; w=0; offset=1; strand=D; shift=7; score=0.731423; -------wTTyAAAy- ; cor=; Ncor= a 0 0 0 0 0 0 0 61.6709 6.79201 0.0163827 6.56946 80.2916 99.95 96.1727 22.5838 0 c 0 0 0 0 0 0 0 0.0212585 0.0169377 1.65465 60.6324 1.65465 0.0166556 0.0188537 41.9137 0 g 0 0 0 0 0 0 0 10.6505 0.0169377 0.0163827 0.0163827 14.7608 0.0166556 1.90422 9.69716 0 t 0 0 0 0 0 0 0 27.6573 93.1741 98.3126 32.7818 3.29292 0.0166556 1.90422 25.8054 0

M02529_2.00_shift7 (lin-54)
; positions_6nt_m2 versus M02529_2.00 (lin-54); m=19/49; ncol2=8; w=0; offset=1; strand=D; shift=7; score=0.710672; -------kTTyAAAt- ; cor=; Ncor= a 0 0 0 0 0 0 0 21.6253 0.019216 0.019216 9.62721 84.5696 99.9424 96.0992 8.84254 0 c 0 0 0 0 0 0 0 0.0269978 0.019216 1.94081 61.5104 0.019216 0.019216 1.94081 23.5311 0 g 0 0 0 0 0 0 0 27.0248 0.019216 0.019216 0.019216 15.392 0.019216 0.019216 0.0293772 0 t 0 0 0 0 0 0 0 51.3229 99.9424 98.0208 28.8432 0.019216 0.019216 1.94081 67.5969 0

M02533_2.00_shift6 (lin-54)
; positions_6nt_m2 versus M02533_2.00 (lin-54); m=20/49; ncol2=9; w=0; offset=0; strand=D; shift=6; score=0.700713; ------mrktyrway- ; cor=; Ncor= a 0 0 0 0 0 0 27.1308 28.8149 22.4414 16.3222 19.0314 43.0856 46.18 50.217 24.0171 0 c 0 0 0 0 0 0 26.5936 23.1245 18.0096 23.3951 37.1918 11.7422 15.9993 13.1491 27.9039 0 g 0 0 0 0 0 0 24.0628 27.1368 25.0508 20.1364 17.5682 37.8333 8.958 23.4848 18.1518 0 t 0 0 0 0 0 0 22.2128 20.9239 34.4982 40.1462 26.2086 7.3389 28.8626 13.1491 29.9272 0

M01319_2.00_shift8 (lin-54)
; positions_6nt_m2 versus M01319_2.00 (lin-54); m=21/49; ncol2=8; w=0; offset=2; strand=D; shift=8; score=0.689236; --------ttyrAAww ; cor=; Ncor= a 0 0 0 0 0 0 0 0 15.8993 17.8907 9.67808 64.0051 84.335 74.636 30.6449 25.3512 c 0 0 0 0 0 0 0 0 16.7145 14.7949 41.2588 4.17437 2.59814 4.10671 23.6288 20.1424 g 0 0 0 0 0 0 0 0 15.1239 12.4819 9.02378 31.784 3.43768 8.02549 4.35998 19.942 t 0 0 0 0 0 0 0 0 52.2623 54.8325 40.0394 0.0364783 9.62917 13.2318 41.3663 34.5645

M09406_2.00_rc_shift6 (M09406_2.00_rc)
; positions_6nt_m2 versus M09406_2.00_rc; m=22/49; ncol2=11; w=0; offset=0; strand=R; shift=6; score=0.678524; ------aswTCAAAGg ; cor=; Ncor= a 0 0 0 0 0 0 67.8 4.8 57.8 6.8 4 97.4 92.4 96.4 11.6 24.8 c 0 0 0 0 0 0 6 47.6 1.2 1.8 77.6 1.2 1 0 5.4 21 g 0 0 0 0 0 0 11.4 38 0.4 1.4 14.4 0 6.6 2.6 81.6 42 t 0 0 0 0 0 0 14.8 9.6 40.6 90 4 1.4 0 1 1.4 12.2

M02524_2.00_shift6 (lin-54)
; positions_6nt_m2 versus M02524_2.00 (lin-54); m=23/49; ncol2=9; w=0; offset=0; strand=D; shift=6; score=0.678364; ------AATTTAAAw- ; cor=; Ncor= a 0 0 0 0 0 0 99.0132 82.947 0.165563 0.165563 0.165563 82.947 99.4048 99.2574 66.1184 0 c 0 0 0 0 0 0 0.328947 0.165563 0.165563 0.165563 16.7219 0.165563 0.198413 0.247525 0.328947 0 g 0 0 0 0 0 0 0.328947 0.165563 0.165563 0.165563 0.165563 16.7219 0.198413 0.247525 0.328947 0 t 0 0 0 0 0 0 0.328947 16.7219 99.5033 99.5033 82.947 0.165563 0.198413 0.247525 33.2237 0

M06451_2.00_shift7 (M06451_2.00)
; positions_6nt_m2 versus M06451_2.00; m=24/49; ncol2=8; w=0; offset=1; strand=D; shift=7; score=0.661002; -------kWTCAAAr- ; cor=; Ncor= a 0 0 0 0 0 0 0 16 68 12 12 92 88 80 32 0 c 0 0 0 0 0 0 0 12 0 20 80 0 4 0 12 0 g 0 0 0 0 0 0 0 44 0 0 8 0 0 12 40 0 t 0 0 0 0 0 0 0 28 32 68 0 8 8 8 16 0

M02520_2.00_rc_shift7 (lin-54_rc)
; positions_6nt_m2 versus M02520_2.00_rc (lin-54_rc); m=25/49; ncol2=8; w=0; offset=1; strand=R; shift=7; score=0.647805; -------rTTTAAAt- ; cor=; Ncor= a 0 0 0 0 0 0 0 39.881 0.198413 0.198413 0.198413 79.5635 99.4048 99.4048 25 0 c 0 0 0 0 0 0 0 0.198413 0.198413 0.198413 20.0397 0.198413 0.198413 0.198413 25 0 g 0 0 0 0 0 0 0 39.881 0.198413 0.198413 0.198413 20.0397 0.198413 0.198413 0.247525 0 t 0 0 0 0 0 0 0 20.0397 99.4048 99.4048 79.5635 0.198413 0.198413 0.198413 49.7525 0

M02530_2.00_shift8 (lin-54)
; positions_6nt_m2 versus M02530_2.00 (lin-54); m=26/49; ncol2=8; w=0; offset=2; strand=D; shift=8; score=0.645842; --------ttyrAAww ; cor=; Ncor= a 0 0 0 0 0 0 0 0 20.9734 17.0043 11.8837 65.3952 80.915 70.7012 26.6361 25.5167 c 0 0 0 0 0 0 0 0 22.2703 21.834 41.895 2.946 3.1062 5.52047 23.1563 24.0308 g 0 0 0 0 0 0 0 0 21.8294 20.9778 13.2655 27.9509 6.07025 8.92148 8.43396 21.1013 t 0 0 0 0 0 0 0 0 34.9269 40.1839 32.9558 3.70784 9.90856 14.8569 41.7737 29.3512

M02646_2.00_shift7 (M02646_2.00)
; positions_6nt_m2 versus M02646_2.00; m=27/49; ncol2=9; w=0; offset=1; strand=D; shift=7; score=0.639442; -------sATcAAAgg ; cor=; Ncor= a 0 0 0 0 0 0 0 5.6 78.2 9.9 11.2 92.9 91.5 83.7 15.9 23.8 c 0 0 0 0 0 0 0 48.1 1.7 2.2 67.5 1 2.9 0.3 14.3 22.8 g 0 0 0 0 0 0 0 36.6 0 0 16.5 0.4 3.2 10.3 66.2 33.7 t 0 0 0 0 0 0 0 9.7 19.4 87.6 4.8 5.8 2.4 5.6 3.6 19.7

M05777_2.00_shift6 (M05777_2.00)
; positions_6nt_m2 versus M05777_2.00; m=28/49; ncol2=9; w=0; offset=0; strand=D; shift=6; score=0.631286; ------AsATCAAAG- ; cor=; Ncor= a 0 0 0 0 0 0 69.7396 0.817057 81.6304 1.38416 2.069 99.5875 99.3258 91.2306 7.84809 0 c 0 0 0 0 0 0 2.47122 48.475 0 0 85.4335 0 0.102845 0 16.4949 0 g 0 0 0 0 0 0 17.459 48.8164 0 0 12.301 0 0.411382 1.47468 73.0856 0 t 0 0 0 0 0 0 10.3302 1.89154 18.3696 98.6158 0.19658 0.412466 0.159982 7.29467 2.57137 0

M00207_2.00_shift7 (M00207_2.00)
; positions_6nt_m2 versus M00207_2.00; m=29/49; ncol2=8; w=0; offset=1; strand=D; shift=7; score=0.60867; -------satcaaag- ; cor=; Ncor= a 0 0 0 0 0 0 0 19.4088 42.1098 24.8778 18.2174 65.195 61.9209 49.3892 24.537 0 c 0 0 0 0 0 0 0 29.2455 16.7815 13.929 43.9204 3.18159 10.1336 10.802 21.7624 0 g 0 0 0 0 0 0 0 32.3213 17.9983 15.8628 21.3784 10.5633 13.2747 16.9409 35.5231 0 t 0 0 0 0 0 0 0 19.0245 23.1103 45.3303 16.4838 21.0601 14.6708 22.8679 18.1775 0

M06487_2.00_shift7 (ceh-20,ceh-40,ceh-60)
; positions_6nt_m2 versus M06487_2.00 (ceh-20,ceh-40,ceh-60); m=30/49; ncol2=8; w=0; offset=1; strand=D; shift=7; score=0.600629; -------yRTCAAAa- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 29.4118 0 0 100 100 82.3529 29.4118 0 c 0 0 0 0 0 0 0 35.2941 0 0 100 0 0 11.7647 23.5294 0 g 0 0 0 0 0 0 0 0 70.5882 0 0 0 0 0 23.5294 0 t 0 0 0 0 0 0 0 64.7059 0 100 0 0 0 5.88235 23.5294 0

M06243_2.00_shift7 (ceh-20,ceh-40,ceh-60)
; positions_6nt_m2 versus M06243_2.00 (ceh-20,ceh-40,ceh-60); m=31/49; ncol2=8; w=0; offset=1; strand=D; shift=7; score=0.600629; -------yRTCAAAa- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 29.4118 0 0 100 100 82.3529 29.4118 0 c 0 0 0 0 0 0 0 35.2941 0 0 100 0 0 11.7647 23.5294 0 g 0 0 0 0 0 0 0 0 70.5882 0 0 0 0 0 23.5294 0 t 0 0 0 0 0 0 0 64.7059 0 100 0 0 0 5.88235 23.5294 0

M06246_2.00_rc_shift7 (ceh-20,ceh-40,ceh-60_rc)
; positions_6nt_m2 versus M06246_2.00_rc (ceh-20,ceh-40,ceh-60_rc); m=32/49; ncol2=8; w=0; offset=1; strand=R; shift=7; score=0.568105; -------yrTCAaaw- ; cor=; Ncor= a 0 0 0 0 0 0 0 8.72027 36.5798 0 0 100 61.2684 46.2061 30.1246 0 c 0 0 0 0 0 0 0 29.3318 0 0 100 0 19.026 16.1948 23.4428 0 g 0 0 0 0 0 0 0 2.94451 57.1914 0 0 0 4.53001 19.479 17.214 0 t 0 0 0 0 0 0 0 59.0034 6.22877 100 0 0 15.1755 18.12 29.2186 0

M09395_2.00_rc_shift5 (M09395_2.00_rc)
; positions_6nt_m2 versus M09395_2.00_rc; m=33/49; ncol2=13; w=-1; offset=-1; strand=R; shift=5; score=0.564787; -----vaswTCAAAGr ; cor=; Ncor= a 0 0 0 0 0 34.6 67.6 4.2 61.2 6.8 6.4 98 93.6 94.6 12.6 27 c 0 0 0 0 0 27.4 5.4 49.6 1.2 1.8 72 1 1.2 0.2 4.8 21.2 g 0 0 0 0 0 30.8 9.8 38.2 0.6 2 17.4 0 5.2 4.6 80.4 40.8 t 0 0 0 0 0 7.2 17.2 8 37 89.4 4.2 1 0 0.6 2.2 11

M07296_2.00_shift1 (lin-54)
; positions_6nt_m2 versus M07296_2.00 (lin-54); m=34/49; ncol2=15; w=-5; offset=-5; strand=D; shift=1; score=0.561794; -wttmAAATTyAAAwt ; cor=; Ncor= a 0 37.5 24 22.8333 36.3333 83.1667 80.6667 77.6667 0 0.1667 0 79.8333 100 100 28.1667 23 c 0 5.3333 13.5 18.3333 26 2.6667 1 0 0.1667 0 53 0 0 0 16.3333 19.3333 g 0 6.3333 0 7.6667 13.6667 13.1667 3 4 0.1667 0 0 20.1667 0 0 1.5 13.5 t 0 50.8333 62.5 51.1667 24 1 15.3333 18.3333 99.6667 99.8333 47 0 0 0 54 44.1667

M00193_2.00_rc_shift5 (M00193_2.00_rc)
; positions_6nt_m2 versus M00193_2.00_rc; m=35/49; ncol2=9; w=-1; offset=-1; strand=R; shift=5; score=0.558414; -----wasawcaaa-- ; cor=; Ncor= a 0 0 0 0 0 27.8784 33.5052 16.9181 39.7157 26.6105 16.3761 53.4388 48.6755 51.2805 0 0 c 0 0 0 0 0 24.2363 21.7954 32.4073 15.9866 16.6316 38.6994 10.8975 16.2027 10.5625 0 0 g 0 0 0 0 0 22.1503 22.0145 30.2164 19.7223 20.1118 23.4724 19.078 15.7238 20.0316 0 0 t 0 0 0 0 0 25.735 22.6849 20.4582 24.5754 36.6461 21.4521 16.5856 19.3981 18.1253 0 0

M05890_2.00_shift4 (M05890_2.00)
; positions_6nt_m2 versus M05890_2.00; m=36/49; ncol2=13; w=-2; offset=-2; strand=D; shift=4; score=0.545065; ----aaAsATCAAAgr ; cor=; Ncor= a 0 0 0 0 31.6 36.7 69.8 2.4 77.7 5.7 4.3 95 91.4 88.1 11.1 28 c 0 0 0 0 23.5 20.4 6.1 43.2 1 0.7 86.7 0.9 3 1.5 19.4 18.3 g 0 0 0 0 22.2 19.8 10.4 49.7 1.4 0.8 6 0.4 3.1 3.6 66.3 38.5 t 0 0 0 0 22.7 23.1 13.8 4.7 19.9 92.9 3 3.7 2.5 6.8 3.2 15.2

M07297_2.00_shift6 (lin-54)
; positions_6nt_m2 versus M07297_2.00 (lin-54); m=37/49; ncol2=15; w=0; offset=0; strand=D; shift=6; score=0.524724; ------awTTyrAATT ; cor=; Ncor= a 0 0 0 0 0 0 51.8333 58.1667 0 0 0 65 100 99.6667 23.3333 5.5 c 0 0 0 0 0 0 9.5 0.1667 0 0 45.1667 0 0 0 3.3333 4.5 g 0 0 0 0 0 0 19.3333 10 0 0 0.3333 35 0 0.1667 0 1.6667 t 0 0 0 0 0 0 19.3333 31.6667 100 100 54.5 0 0 0.1667 73.3333 88.3333

M09328_2.00_shift5 (fax-1)
; positions_6nt_m2 versus M09328_2.00 (fax-1); m=38/49; ncol2=14; w=-1; offset=-1; strand=D; shift=5; score=0.523662; -----aAAGTCAAAAg ; cor=; Ncor= a 0 0 0 0 0 50.1394 82.8067 78.5316 6.87732 6.87732 6.87732 93.1227 79.368 96.5613 81.9703 24.9071 c 0 0 0 0 0 15.474 6.87732 3.43866 6.87732 0 89.684 0 13.7546 0 0 6.87732 g 0 0 0 0 0 18.9126 6.87732 14.5911 72.4907 10.316 3.43866 3.43866 6.87732 0 14.5911 61.3383 t 0 0 0 0 0 15.474 3.43866 3.43866 13.7546 82.8067 0 3.43866 0 3.43866 3.43866 6.87732

M05895_2.00_shift8 (M05895_2.00)
; positions_6nt_m2 versus M05895_2.00; m=39/49; ncol2=10; w=0; offset=2; strand=D; shift=8; score=0.502918; --------WTCAAAGg ; cor=; Ncor= a 0 0 0 0 0 0 0 0 74.3 3.2 4.6 98.4 98.5 96.3 8.8 23.2 c 0 0 0 0 0 0 0 0 0.3 0.5 84.9 0.2 0.5 0.6 12.9 18.9 g 0 0 0 0 0 0 0 0 0.3 0.2 8.7 0.2 0.4 1.8 77.3 44.6 t 0 0 0 0 0 0 0 0 25 96.2 1.8 1.2 0.6 1.3 0.9 13.4

M07301_2.00_shift1 (lin-54)
; positions_6nt_m2 versus M07301_2.00 (lin-54); m=40/49; ncol2=14; w=-5; offset=-5; strand=D; shift=1; score=0.479543; -TTyaAAATTyRAAw- ; cor=; Ncor= a 0 19.6667 11.1667 12.1667 49.5 89 93.6667 79.3333 1.1667 0 0 68.8333 100 100 29.3333 0 c 0 6.8333 7.1667 27.5 20.1667 1.5 2.1667 0 0 0 47.8333 0 0 0 13.1667 0 g 0 3.5 0.5 7.1667 19.3333 6.8333 1.3333 4.6667 0.6667 0 0 31.1667 0 0 0.5 0 t 0 70 81.1667 53.1667 11 2.6667 2.8333 16 98.1667 100 52.1667 0 0 0 57 0

M07299_2.00_shift6 (lin-54)
; positions_6nt_m2 versus M07299_2.00 (lin-54); m=41/49; ncol2=15; w=0; offset=0; strand=D; shift=6; score=0.473386; ------wwwTwaAAAT ; cor=; Ncor= a 0 0 0 0 0 0 51.5152 36.7424 26.8939 20.4545 32.5758 60.6061 86.3636 87.8788 92.4242 0 c 0 0 0 0 0 0 5.6818 3.4091 4.1667 2.2727 14.3939 9.8485 0 0.3788 0 3.0303 g 0 0 0 0 0 0 10.6061 10.6061 3.0303 3.4091 5.6818 15.5303 13.2576 6.0606 0 1.1364 t 0 0 0 0 0 0 32.197 49.2424 65.9091 73.8636 47.3485 14.0152 0.3788 5.6818 7.5758 95.8333

M00654_2.00_rc_shift9 (mab-23_rc)
; positions_6nt_m2 versus M00654_2.00_rc (mab-23_rc); m=42/49; ncol2=8; w=0; offset=3; strand=R; shift=9; score=0.470973; ---------ryraaww ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 27.2171 24.6535 60.2373 53.36 54.9449 45.2693 27.4258 c 0 0 0 0 0 0 0 0 0 23.8992 32.2952 5.09517 20.0266 10.1384 8.78133 11.7222 g 0 0 0 0 0 0 0 0 0 26.1499 11.0775 27.0664 15.2879 11.8975 11.7356 21.1467 t 0 0 0 0 0 0 0 0 0 22.7337 31.9738 7.6011 11.3255 23.0192 34.2138 39.7053

M07295_2.00_shift0 (lin-54)
; positions_6nt_m2 versus M07295_2.00 (lin-54); m=43/49; ncol2=15; w=-6; offset=-6; strand=D; shift=0; score=0.469208; WTwaAAwATTyAAAw- ; cor=; Ncor= a 26.2982 24.1206 39.6985 60.9715 77.5544 93.6348 56.2814 82.0771 0 0 0 86.2647 85.7621 100 54.9414 0 c 2.0101 3.3501 18.7605 8.2077 10.8878 0 2.1776 0 0 0 32.4958 0 14.2379 0 5.5276 0 g 3.1826 1.34 2.6801 7.5377 3.0151 5.0251 16.0804 2.6801 0 0 0 13.7353 0 0 0 0 t 68.5092 71.1893 38.861 23.2831 8.5427 1.34 25.4606 15.2429 100 100 67.5042 0 0 0 39.531 0

M06541_2.00_rc_shift5 (M06541_2.00_rc)
; positions_6nt_m2 versus M06541_2.00_rc; m=44/49; ncol2=8; w=-1; offset=-1; strand=R; shift=5; score=0.463009; -----TWATTmRw--- ; cor=; Ncor= a 0 0 0 0 0 0 69.2308 76.9231 0 11.5385 50 73.0769 53.8462 0 0 0 c 0 0 0 0 0 15.3846 3.84615 11.5385 0 7.69231 26.9231 0 7.69231 0 0 0 g 0 0 0 0 0 0 0 11.5385 0 0 23.0769 26.9231 11.5385 0 0 0 t 0 0 0 0 0 84.6154 26.9231 0 100 80.7692 0 0 26.9231 0 0 0

M06358_2.00_rc_shift5 (M06358_2.00_rc)
; positions_6nt_m2 versus M06358_2.00_rc; m=45/49; ncol2=8; w=-1; offset=-1; strand=R; shift=5; score=0.463009; -----TWATTmRw--- ; cor=; Ncor= a 0 0 0 0 0 0 69.2308 76.9231 0 11.5385 50 73.0769 53.8462 0 0 0 c 0 0 0 0 0 15.3846 3.84615 11.5385 0 7.69231 26.9231 0 7.69231 0 0 0 g 0 0 0 0 0 0 0 11.5385 0 0 23.0769 26.9231 11.5385 0 0 0 t 0 0 0 0 0 84.6154 26.9231 0 100 80.7692 0 0 26.9231 0 0 0

M06359_2.00_rc_shift5 (M06359_2.00_rc)
; positions_6nt_m2 versus M06359_2.00_rc; m=46/49; ncol2=8; w=-1; offset=-1; strand=R; shift=5; score=0.461122; -----YwATTvra--- ; cor=; Ncor= a 0 0 0 0 0 0 55.5985 74.1313 0 6.27413 39.4788 57.3359 47.4903 0 0 0 c 0 0 0 0 0 27.7027 15.8301 11.7761 0 13.61 28.668 2.79923 13.9961 0 0 0 g 0 0 0 0 0 0 1.35135 13.417 0 0 29.7297 34.0734 17.8571 0 0 0 t 0 0 0 0 0 72.2973 27.2201 0.675676 100 80.1158 2.12355 5.79151 20.6564 0 0 0

M07300_2.00_shift0 (lin-54)
; positions_6nt_m2 versus M07300_2.00 (lin-54); m=47/49; ncol2=15; w=-6; offset=-6; strand=D; shift=0; score=0.457523; wTTyaAAATTyRAAw- ; cor=; Ncor= a 42.9048 22.5376 10.0167 9.015 48.7479 93.3222 92.4875 85.8097 1.6694 0 0 72.621 100 100 29.7162 0 c 8.1803 3.8397 6.8447 28.8815 22.0367 1.0017 2.3372 0 0.1669 0 53.0885 0.1669 0 0 15.5259 0 g 10.1836 4.6745 0.1669 6.8447 17.8631 4.3406 0.1669 2.3372 1.1686 0 0 27.212 0 0 1.6694 0 t 38.7312 68.9482 82.9716 55.2588 11.3523 1.3356 5.0083 11.8531 96.995 100 46.9115 0 0 0 53.0885 0

M07298_2.00_shift0 (lin-54)
; positions_6nt_m2 versus M07298_2.00 (lin-54); m=48/49; ncol2=15; w=-6; offset=-6; strand=D; shift=0; score=0.445102; wTwwAAAATTYAAAw- ; cor=; Ncor= a 32 15.8333 27.8333 36.5 73.5 90.5 77.6667 80.6667 0 0 0 80.3333 92.5 99.8333 44.6667 0 c 2.8333 2.6667 6.1667 11.5 9 0 0.5 0 0 0 28.1667 0 7.5 0 2.6667 0 g 4.5 1 1.1667 7.6667 11.6667 7.1667 11 3.8333 0 0 0 19.6667 0 0.1667 0 0 t 60.6667 80.5 64.8333 44.3333 5.8333 2.3333 10.8333 15.5 100 100 71.8333 0 0 0 52.6667 0

M05877_2.00_shift4 (nhr-91)
; positions_6nt_m2 versus M05877_2.00 (nhr-91); m=49/49; ncol2=8; w=-2; offset=-2; strand=D; shift=4; score=0.406566; ----yrrGTTCA---- ; cor=; Ncor= a 0 0 0 0 22.2 35.6 55.5 2.4 1.7 6.1 5.5 88.6 0 0 0 0 c 0 0 0 0 28 4.5 2.4 2.5 2.3 3.1 74.3 1.9 0 0 0 0 g 0 0 0 0 4.3 56.7 38.6 91.9 7 8.2 2.8 7.6 0 0 0 0 t 0 0 0 0 45.5 3.2 3.4 3.2 89 82.7 17.4 1.9 0 0 0 0

One-to-n matrix alignment; reference matrix: positions_6nt_m1_shift5 ; 97 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
positions_6nt_m1_shift5 (positions_6nt_m1)
; positions_6nt_m1; m=0 (reference); ncol1=11; shift=5; ncol=16; -----ywAAAAATwaw ; Alignment reference a 0 0 0 0 0 80 211 443 443 443 441 443 0 181 178 172 c 0 0 0 0 0 122 89 0 0 0 0 0 0 58 81 25 g 0 0 0 0 0 79 25 0 0 0 0 0 0 6 82 39 t 0 0 0 0 0 162 118 0 0 0 2 0 443 198 102 207

M00070_2.00_shift5 (sox-2,sox-3,sox-4)
; positions_6nt_m1 versus M00070_2.00 (sox-2,sox-3,sox-4); m=1/96; ncol2=11; w=0; offset=0; strand=D; shift=5; score=0.767849; -----hrAACAATwrt ; cor=; Ncor= a 0 0 0 0 0 26.8573 50.9793 84.8016 99.9893 0.00358234 90.3786 99.9893 0.00358234 59.126 34.5743 19.9374 c 0 0 0 0 0 27.2224 9.8806 5.06614 0.00358234 90.3786 0.00358234 0.00358234 0.00358234 7.11547 15.123 19.9374 g 0 0 0 0 0 17.8881 29.2595 5.06614 0.00358234 0.00358234 0.00358234 0.00358234 0.00358234 7.11547 25.7625 19.9374 t 0 0 0 0 0 28.0322 9.8806 5.06614 0 9.61423 9.61423 0 99.9893 26.6431 24.5401 40.1877

M07439_2.00_shift7 (M07439_2.00)
; positions_6nt_m1 versus M07439_2.00; m=2/96; ncol2=9; w=0; offset=2; strand=D; shift=7; score=0.751493; -------awAAATwwt ; cor=; Ncor= a 0 0 0 0 0 0 0 59 61.6162 76 92 100 0 34 32 22 c 0 0 0 0 0 0 0 11 5.05051 0 0 0 0 2 8 14 g 0 0 0 0 0 0 0 15 5.05051 0 0 0 0 2 8 14 t 0 0 0 0 0 0 0 15 28.2828 24 8 0 100 62 52 50

M08479_2.00_shift7 (M08479_2.00)
; positions_6nt_m1 versus M08479_2.00; m=3/96; ncol2=9; w=0; offset=2; strand=D; shift=7; score=0.75063; -------awAAATwwt ; cor=; Ncor= a 0 0 0 0 0 0 0 59 61 76 92 100 0 34 32 22 c 0 0 0 0 0 0 0 11 5 0 0 0 0 2 8 14 g 0 0 0 0 0 0 0 15 5 0 0 0 0 2 8 14 t 0 0 0 0 0 0 0 15 29 24 8 0 100 62 52 50

M00627_2.00_rc_shift5 (K11D2.4_rc)
; positions_6nt_m1 versus M00627_2.00_rc (K11D2.4_rc); m=4/96; ncol2=10; w=0; offset=0; strand=R; shift=5; score=0.735628; -----akAAAAAasw- ; cor=; Ncor= a 0 0 0 0 0 52.8741 23.5058 85.3694 91.8917 94.5718 92.9401 96.0132 45.9014 18.1025 29.2221 0 c 0 0 0 0 0 23.9966 7.74654 1.51738 1.87876 0.979571 1.82568 1.8121 19.8161 27.2772 21.2196 0 g 0 0 0 0 0 15.4547 34.0301 4.46821 1.41993 1.50585 1.4077 0.433651 18.8497 31.3762 17.9023 0 t 0 0 0 0 0 7.67458 34.7176 8.64505 4.80959 2.94279 3.82652 1.74105 15.4328 23.2441 31.656 0

M00710_2.00_shift5 (egl-13,sox-2,sox-3,sox-4)
; positions_6nt_m1 versus M00710_2.00 (egl-13,sox-2,sox-3,sox-4); m=5/96; ncol2=10; w=0; offset=0; strand=D; shift=5; score=0.715582; -----wrAACAATag- ; cor=; Ncor= a 0 0 0 0 0 45.0923 29.8333 89.6801 91.0076 8.96351 99.9567 99.9567 0.0144469 60.968 24.0264 0 c 0 0 0 0 0 14.8771 20.418 0.0144469 8.96351 80.731 0.0144469 0.0144469 0.0144469 10.1374 23.7286 0 g 0 0 0 0 0 14.8771 28.9058 0.0144469 0.0144469 0.0144469 0.0144469 0.0144469 0.0144469 10.1374 37.1677 0 t 0 0 0 0 0 25.1536 20.8429 10.291 0.0144469 10.291 0.0144469 0.0144469 99.9567 18.7572 15.0773 0

M09597_2.00_shift4 (mef-2)
; positions_6nt_m1 versus M09597_2.00 (mef-2); m=6/96; ncol2=12; w=-1; offset=-1; strand=D; shift=4; score=0.702375; ----dcyaaAAATAGm ; cor=; Ncor= a 0 0 0 0 25.9 18.9 1.7 64.1 59 88.7 87.1 89 3 93.5 19.5 35.2 c 0 0 0 0 9.9 60 44.4 11.9 3.3 0.6 0.6 1 3 0.2 6.2 43.9 g 0 0 0 0 33.7 6.5 0.1 7.8 17.5 4.3 2.4 0.7 1.1 5.8 69.3 10 t 0 0 0 0 30.5 14.6 53.8 16.2 20.2 6.4 9.9 9.3 92.9 0.5 5 10.8

M11309_2.00_shift5 (sox-2,sox-3,sox-4)
; positions_6nt_m1 versus M11309_2.00 (sox-2,sox-3,sox-4); m=7/96; ncol2=10; w=0; offset=0; strand=D; shift=5; score=0.690964; -----ywAACAATrs- ; cor=; Ncor= a 0 0 0 0 0 18.1818 31.8182 91.3043 95.6522 0 100 95.6522 0 43.4783 21.7391 0 c 0 0 0 0 0 27.2727 18.1818 0 0 95.6522 0 4.34783 0 13.0435 30.4348 0 g 0 0 0 0 0 13.6364 13.6364 4.34783 4.34783 0 0 0 0 26.087 26.087 0 t 0 0 0 0 0 40.9091 36.3636 4.34783 0 4.34783 0 0 100 17.3913 21.7391 0

M09250_2.00_shift5 (mef-2)
; positions_6nt_m1 versus M09250_2.00 (mef-2); m=8/96; ncol2=12; w=0; offset=0; strand=D; shift=5; score=0.686051; -----CTAwAAATAGm ; cor=; Ncor= a 0 0 0 0 0 8.8 1 84.6 60.4 86 90 93.6 2.6 97.2 15.8 36.8 c 0 0 0 0 0 78.6 23.6 5.4 1.2 0.6 0.8 0.4 0.2 0.6 6 50 g 0 0 0 0 0 3.2 0 1.4 8.6 4 1.2 0.6 0.2 2 75.8 6.4 t 0 0 0 0 0 9.4 75.4 8.6 29.8 9.4 8 5.4 97 0.2 2.4 6.8

M09248_2.00_shift4 (mef-2)
; positions_6nt_m1 versus M09248_2.00 (mef-2); m=9/96; ncol2=13; w=-1; offset=-1; strand=D; shift=4; score=0.675054; ----kcyAAAAATAGm ; cor=; Ncor= a 0 0 0 0 17.4 14 0.8 69.8 74 92.8 90.2 93.2 3 93.6 23.2 38.4 c 0 0 0 0 10.2 63.4 42.2 12.2 2.2 1 0.6 0.2 0.6 0 4.6 42 g 0 0 0 0 36.4 7.2 0.4 4.2 9 3.8 1.2 0.6 1.6 6.2 69.2 9.2 t 0 0 0 0 36 15.4 56.6 13.8 14.8 2.4 8 6 94.8 0.2 3 10.4

M09247_2.00_shift4 (mef-2)
; positions_6nt_m1 versus M09247_2.00 (mef-2); m=10/96; ncol2=13; w=-1; offset=-1; strand=D; shift=4; score=0.674699; ----kcyAAAAATAGm ; cor=; Ncor= a 0 0 0 0 15.2 14.4 1.2 70.8 77.2 92.8 89.2 92.6 5.8 94.2 19.8 40.4 c 0 0 0 0 10.4 65.8 43.6 11.6 1.2 1 0.4 0.8 0.8 0 5 38.8 g 0 0 0 0 38.4 3.8 0.2 3.6 8.2 4.8 0.2 0.2 0.6 5.6 72.4 8 t 0 0 0 0 36 16 55 14 13.4 1.4 10.2 6.4 92.8 0.2 2.8 12.8

M03340_2.00_shift4 (mef-2)
; positions_6nt_m1 versus M03340_2.00 (mef-2); m=11/96; ncol2=12; w=-1; offset=-1; strand=D; shift=4; score=0.658048; ----kCTAwAAATAGm ; cor=; Ncor= a 0 0 0 0 13.5732 4.73978 0 99.2843 53.1346 86.0816 95.0098 95.7594 0 99.692 14.3105 54.4715 c 0 0 0 0 7.03189 90.2416 0.918367 0.306748 0 0.177305 0 0.394477 0.20555 0.205339 0.433651 33.243 g 0 0 0 0 38.8389 0.27881 0 0 0.20555 0 0 0 0 0 84.2151 3.7037 t 0 0 0 0 40.556 4.73978 99.0816 0.408998 46.6598 13.7411 4.99022 3.84615 99.7945 0.102669 1.04076 8.58175

M00651_2.00_rc_shift6 (mex-6_rc)
; positions_6nt_m1 versus M00651_2.00_rc (mex-6_rc); m=12/96; ncol2=10; w=0; offset=1; strand=R; shift=6; score=0.656699; ------waATAATAAr ; cor=; Ncor= a 0 0 0 0 0 0 29.2863 66.3373 79.0552 17.5069 99.9633 99.9633 12.0422 99.9633 76.2969 39.2485 c 0 0 0 0 0 0 20.5145 8.16601 12.1974 0.0122303 0.0122303 0.0122303 0.0122303 0.0122303 4.49775 16.8462 g 0 0 0 0 0 0 20.5145 8.16601 0.0122303 0.0122303 0.0122303 0.0122303 0.0122303 0.0122303 14.7076 27.0591 t 0 0 0 0 0 0 29.6848 17.3306 8.73512 82.4686 0.0122303 0.0122303 87.9333 0.0122303 4.49775 16.8462

M01931_2.00_rc_shift5 (M01931_2.00_rc)
; positions_6nt_m1 versus M01931_2.00_rc; m=13/96; ncol2=10; w=0; offset=0; strand=R; shift=5; score=0.650275; -----twATAmATTa- ; cor=; Ncor= a 0 0 0 0 0 20.213 42.7268 90.7895 9.08049 99.9536 38.1045 99.9536 0.0154783 13.8675 44.9154 0 c 0 0 0 0 0 20.213 9.78637 0.0154783 0.0154783 0.0154783 48.9012 0.0154783 0.0154783 4.80252 24.6263 0 g 0 0 0 0 0 20.213 19.5482 0.0154783 0.0154783 0.0154783 0.0154783 0.0154783 0.0154783 4.80252 15.2291 0 t 0 0 0 0 0 39.3611 27.9387 9.17957 90.8886 0.0154783 12.9788 0.0154783 99.9536 76.5274 15.2291 0

M05894_2.00_shift6 (sox-2,sox-3,sox-4)
; positions_6nt_m1 versus M05894_2.00 (sox-2,sox-3,sox-4); m=14/96; ncol2=10; w=0; offset=1; strand=D; shift=6; score=0.647531; ------waACAATrrr ; cor=; Ncor= a 0 0 0 0 0 0 39.6 61.9 97 0.7 97.7 97.2 7.6 44.1 25.6 30.3 c 0 0 0 0 0 0 7.6 14.7 1.1 90.2 0.6 0.7 1.4 3.3 18.8 17.9 g 0 0 0 0 0 0 20 16.7 0.8 2 0.8 0.7 0.9 37.7 44.3 28.5 t 0 0 0 0 0 0 32.8 6.7 1.1 7.1 0.8 1.4 90.1 14.9 11.3 23.3

M01687_2.00_shift8 (M01687_2.00)
; positions_6nt_m1 versus M01687_2.00; m=15/96; ncol2=8; w=0; offset=3; strand=D; shift=8; score=0.634834; --------AAAWTAAT ; cor=; Ncor= a 0 0 0 0 0 0 0 0 83.9058 88.161 83.2686 69.3951 16.6759 83.2686 76.4101 18.5281 c 0 0 0 0 0 0 0 0 0.0399361 0.0293772 0.0277469 0.0277469 0.0277469 0.0277469 2.9671 3.73521 g 0 0 0 0 0 0 0 0 12.0208 0.0293772 0.0277469 0.0277469 0.0277469 0.0277469 0.0293772 0.0369822 t 0 0 0 0 0 0 0 0 4.03355 11.7803 16.6759 30.5494 83.2686 16.6759 20.5934 77.6997

M09255_2.00_shift3 (mef-2)
; positions_6nt_m1 versus M09255_2.00 (mef-2); m=16/96; ncol2=14; w=-2; offset=-2; strand=D; shift=3; score=0.62384; ---wkcyAaAAATAGm ; cor=; Ncor= a 0 0 0 32.998 16.499 14.0845 2.01207 73.8431 67.4044 86.7203 91.3481 89.1348 4.42656 89.7384 21.328 41.2475 c 0 0 0 10.2616 11.2676 67.2032 35.4125 8.4507 2.61569 2.01207 1.40845 1.20724 3.42052 0.804829 5.4326 38.2294 g 0 0 0 20.7243 40.2414 5.03018 1.20724 2.8169 12.4748 5.6338 1.60966 2.01207 1.40845 7.84708 68.2093 8.2495 t 0 0 0 36.0161 31.992 13.6821 61.3682 14.8893 17.505 5.6338 5.6338 7.64588 90.7445 1.60966 5.03018 12.2736

M01209_2.00_shift8 (lin-28)
; positions_6nt_m1 versus M01209_2.00 (lin-28); m=17/96; ncol2=8; w=0; offset=3; strand=D; shift=8; score=0.619759; --------AAAATAAA ; cor=; Ncor= a 0 0 0 0 0 0 0 0 97.1154 97.1154 97.1154 97.1154 0.961538 97.1154 97.1154 97.1154 c 0 0 0 0 0 0 0 0 0.961538 0.961538 0.961538 0.961538 0.961538 0.961538 0.961538 0.961538 g 0 0 0 0 0 0 0 0 0.961538 0.961538 0.961538 0.961538 0.961538 0.961538 0.961538 0.961538 t 0 0 0 0 0 0 0 0 0.961538 0.961538 0.961538 0.961538 97.1154 0.961538 0.961538 0.961538

M00613_2.00_rc_shift5 (lin-29_rc)
; positions_6nt_m1 versus M00613_2.00_rc (lin-29_rc); m=18/96; ncol2=8; w=0; offset=0; strand=R; shift=5; score=0.606774; -----gAAAAAAa--- ; cor=; Ncor= a 0 0 0 0 0 24.2861 77.7565 83.8146 98.96 98.96 91.8922 71.8555 56.9619 0 0 0 c 0 0 0 0 0 15.7196 9.09733 6.06826 0.0100969 0.0100969 3.03918 15.6289 12.7964 0 0 0 g 0 0 0 0 0 42.8469 3.03918 2.02948 0.0100969 0.0100969 1.01979 8.34027 10.4719 0 0 0 t 0 0 0 0 0 17.1473 10.107 8.08764 1.01979 1.01979 4.04887 4.17534 19.7699 0 0 0

M09251_2.00_shift5 (mef-2)
; positions_6nt_m1 versus M09251_2.00 (mef-2); m=19/96; ncol2=14; w=0; offset=0; strand=D; shift=5; score=0.606072; -----CyaAAAATAGm ; cor=; Ncor= a 0 0 0 0 0 13 4 63.4 70 90.2 91.4 86.8 8 90.8 14 35.4 c 0 0 0 0 0 69.6 48.8 14 4.8 1.4 0.4 0.6 3.2 0.2 4 37.4 g 0 0 0 0 0 5.2 0 5.6 11.8 4.8 0.6 2 2.6 8.8 77.2 10.4 t 0 0 0 0 0 12.2 47.2 17 13.4 3.6 7.6 10.6 86.2 0.2 4.8 16.8

M01680_2.00_shift8 (M01680_2.00)
; positions_6nt_m1 versus M01680_2.00; m=20/96; ncol2=8; w=0; offset=3; strand=D; shift=8; score=0.602012; --------AAAATAAA ; cor=; Ncor= a 0 0 0 0 0 0 0 0 99.0132 99.2574 99.2574 99.2574 25 99.2574 99.2574 99.0132 c 0 0 0 0 0 0 0 0 0.328947 0.247525 0.247525 0.247525 0.247525 0.247525 0.247525 0.328947 g 0 0 0 0 0 0 0 0 0.328947 0.247525 0.247525 0.247525 0.247525 0.247525 0.247525 0.328947 t 0 0 0 0 0 0 0 0 0.328947 0.247525 0.247525 0.247525 74.505 0.247525 0.247525 0.328947

M02532_2.00_shift4 (lin-54)
; positions_6nt_m1 versus M02532_2.00 (lin-54); m=21/96; ncol2=13; w=-1; offset=-1; strand=D; shift=4; score=0.597876; ----twttwAAATTtt ; cor=; Ncor= a 0 0 0 0 21.7767 26.1094 14.2765 9.59039 47.8285 91.7648 99.9727 99.9727 11.4403 7.41257 10.7326 24.396 c 0 0 0 0 21.7767 17.5965 14.2765 18.1194 13.1754 8.21699 0.00909916 0.00909916 3.23238 7.41257 10.7326 24.396 g 0 0 0 0 21.7767 17.5965 14.2765 9.59039 12.7056 0.00909916 0.00909916 0.00909916 3.23238 7.41257 10.7326 24.0964 t 0 0 0 0 34.6698 38.6975 57.1704 62.6998 26.2905 0 0 0 82.095 77.7623 67.8023 27.1117

M08213_2.00_shift8 (mef-2)
; positions_6nt_m1 versus M08213_2.00 (mef-2); m=22/96; ncol2=8; w=0; offset=3; strand=D; shift=8; score=0.591941; --------AAAATAgc ; cor=; Ncor= a 0 0 0 0 0 0 0 0 80.9412 88.353 86.4705 84.7059 12.2353 88 15.8824 22.9412 c 0 0 0 0 0 0 0 0 4.5882 2.8235 3.8824 3.6471 7.7647 0.5882 9.17649 58.9411 g 0 0 0 0 0 0 0 0 7.7647 4.5882 3.7647 4.8235 7.0588 5.4118 67.5293 7.88239 t 0 0 0 0 0 0 0 0 6.7059 4.2353 5.88239 6.8235 72.9412 6 7.41179 10.2353

M09252_2.00_shift3 (mef-2)
; positions_6nt_m1 versus M09252_2.00 (mef-2); m=23/96; ncol2=14; w=-2; offset=-2; strand=D; shift=3; score=0.589316; ---dkCTAwAAATAGm ; cor=; Ncor= a 0 0 0 31.8 16 9.2 1.2 86.4 60 87.2 89 93.4 3.4 96.8 16 36.6 c 0 0 0 8.6 6.4 78.8 22.4 5 1.4 0.6 0.8 0.4 0.4 0.6 6 48.8 g 0 0 0 28.6 47.4 3.4 0 1 9 3.2 2.2 0.4 0 2.4 75.4 7.4 t 0 0 0 31 30.2 8.6 76.4 7.6 29.6 9 8 5.8 96.2 0.2 2.6 7.2

M01108_2.00_shift5 (M01108_2.00)
; positions_6nt_m1 versus M01108_2.00; m=24/96; ncol2=8; w=0; offset=0; strand=D; shift=5; score=0.587078; -----waawwAww--- ; cor=; Ncor= a 0 0 0 0 0 42.3349 53.6851 59.1376 50.1697 57.7953 85.2706 52.0642 27.9377 0 0 0 c 0 0 0 0 0 12.4985 10.731 5.31146 3.50928 2.99489 2.84576 1.48065 6.82081 0 0 0 g 0 0 0 0 0 19.9976 18.4144 11.0217 4.83273 1.98756 1.85119 3.82852 6.68575 0 0 0 t 0 0 0 0 0 25.169 17.1695 24.5293 41.4883 37.2223 10.0325 42.6266 58.5557 0 0 0

M08149_2.00_shift2 (mef-2)
; positions_6nt_m1 versus M08149_2.00 (mef-2); m=25/96; ncol2=15; w=-3; offset=-3; strand=D; shift=2; score=0.586764; --rdkcyAAAAATAGm ; cor=; Ncor= a 0 0 31.9149 33.1824 19.5111 17.2929 0 73.1553 77.2295 95.3825 96.469 96.6501 2.53508 98.5514 17.6098 44.1376 c 0 0 14.5315 6.83567 8.87279 63.9203 44.5903 11.589 1.44862 0 0 0 2.8067 0 5.43232 37.8452 g 0 0 30.6021 25.9393 37.2114 3.53101 0 3.34993 10.9099 3.93843 0.0905387 0.181077 0 1.44862 75.6451 6.69986 t 0 0 22.9516 34.0426 34.4047 15.2558 55.4097 11.9058 10.412 0.67904 3.44047 3.16885 94.6582 0 1.31281 11.3173

M01104_2.00_shift4 (M01104_2.00)
; positions_6nt_m1 versus M01104_2.00; m=26/96; ncol2=10; w=-1; offset=-1; strand=D; shift=4; score=0.586566; ----waaawwAwwh-- ; cor=; Ncor= a 0 0 0 0 27.5242 35.4896 39.3688 44.6255 36.9831 50.4457 79.6844 60.5595 29.6896 30.638 0 0 c 0 0 0 0 20.8023 19.4771 19.9449 10.1584 8.58882 4.48571 0.0336438 0.00624251 0.0115716 26.108 0 0 g 0 0 0 0 17.0315 22.6292 17.5135 22.608 12.3106 7.69751 0.0336438 0.0397012 2.88867 10.7214 0 0 t 0 0 0 0 34.642 22.404 23.1727 22.608 42.1174 37.3711 20.2484 39.3945 67.4102 32.5326 0 0

M01106_2.00_shift5 (M01106_2.00)
; positions_6nt_m1 versus M01106_2.00; m=27/96; ncol2=8; w=0; offset=0; strand=D; shift=5; score=0.585235; -----aawwwAww--- ; cor=; Ncor= a 0 0 0 0 0 48.3861 55.0968 56.1595 51.3647 59.7236 76.3937 58.2011 38.0653 0 0 0 c 0 0 0 0 0 9.20009 14.0005 5.86027 4.01064 3.7424 3.69101 0.774067 2.03258 0 0 0 g 0 0 0 0 0 21.525 16.7616 11.4524 6.95145 3.09481 3.37333 2.78404 0.203784 0 0 0 t 0 0 0 0 0 20.8888 14.1412 26.5279 37.6733 33.4392 16.542 38.2408 59.6983 0 0 0

M07979_2.00_shift2 (mef-2)
; positions_6nt_m1 versus M07979_2.00 (mef-2); m=28/96; ncol2=15; w=-3; offset=-3; strand=D; shift=2; score=0.584684; --rdkcyAAAAATAGm ; cor=; Ncor= a 0 0 31.0573 31.0573 16.0793 14.978 0 71.1454 70.4846 93.8326 90.5286 92.511 3.304 95.815 20.9251 41.63 c 0 0 15.4185 10.5727 10.1322 64.0969 50.6608 12.9956 1.9824 0 0.4405 0 0 0 5.28631 35.4626 g 0 0 30.6167 27.0925 38.5463 5.7269 0 2.4229 11.4537 4.4053 0.2203 0 0 4.185 70.2644 9.03079 t 0 0 22.9075 31.2775 35.2423 15.1982 49.3392 13.4361 16.0793 1.7621 8.8106 7.489 96.696 0 3.5242 13.8767

M01671_2.00_shift5 (M01671_2.00)
; positions_6nt_m1 versus M01671_2.00; m=29/96; ncol2=9; w=0; offset=0; strand=D; shift=5; score=0.582145; -----ssrrwAAwt-- ; cor=; Ncor= a 0 0 0 0 0 24.1564 20.939 34.5181 32.972 41.1309 71.0467 88.6835 45.4667 21.2559 0 0 c 0 0 0 0 0 26.697 30.6188 18.2011 17.9153 4.29202 4.77473 0.0920958 0.977243 17.7544 0 0 g 0 0 0 0 0 26.1683 25.0685 30.3102 25.1701 20.2217 0.0514748 4.50449 3.80753 9.74383 0 0 t 0 0 0 0 0 22.9783 23.3737 16.9706 23.9426 34.3554 24.1271 6.7199 49.7485 51.2458 0 0

M07980_2.00_shift2 (mef-2)
; positions_6nt_m1 versus M07980_2.00 (mef-2); m=30/96; ncol2=15; w=-3; offset=-3; strand=D; shift=2; score=0.575956; --rdkcyAAAAATAGm ; cor=; Ncor= a 0 0 31.3525 29.7131 13.9344 14.3443 0 69.0574 71.9263 93.0328 89.3443 88.9344 3.6885 93.8525 17.2131 38.1148 c 0 0 14.5492 11.4754 12.2951 64.7541 53.0738 14.5492 1.6393 0 0.2049 0 0 0 5.32789 39.1393 g 0 0 31.1475 27.6639 38.7295 4.918 0.4098 3.6885 12.9098 4.918 0.2049 1.0246 0.4098 6.1475 74.5901 8.6066 t 0 0 22.9508 31.1475 35.041 15.9836 46.5164 12.7049 13.5246 2.0492 10.2459 10.041 95.9017 0 2.8689 14.1393

M09253_2.00_shift3 (mef-2)
; positions_6nt_m1 versus M09253_2.00 (mef-2); m=31/96; ncol2=15; w=-2; offset=-2; strand=D; shift=3; score=0.57435; ---dkcyAAAAATAGm ; cor=; Ncor= a 0 0 0 34.8485 12.8788 17.0455 1.51515 75.3788 74.2424 92.0455 85.2273 84.0909 6.81818 93.5606 15.1515 44.697 c 0 0 0 7.19697 12.1212 65.1515 40.5303 8.33333 2.65152 0.378788 0 0.757576 1.51515 1.13636 5.68182 36.7424 g 0 0 0 25 44.697 2.27273 0 5.30303 6.81818 4.54545 4.16667 1.89394 0.378788 5.30303 76.8939 7.57576 t 0 0 0 32.9545 30.303 15.5303 57.9545 10.9848 16.2879 3.0303 10.6061 13.2576 91.2879 0 2.27273 10.9848

M00654_2.00_rc_shift5 (mab-23_rc)
; positions_6nt_m1 versus M00654_2.00_rc (mab-23_rc); m=32/96; ncol2=8; w=0; offset=0; strand=R; shift=5; score=0.566785; -----ryraawwt--- ; cor=; Ncor= a 0 0 0 0 0 27.2171 24.6535 60.2373 53.36 54.9449 45.2693 27.4258 19.9192 0 0 0 c 0 0 0 0 0 23.8992 32.2952 5.09517 20.0266 10.1384 8.78133 11.7222 18.5725 0 0 0 g 0 0 0 0 0 26.1499 11.0775 27.0664 15.2879 11.8975 11.7356 21.1467 21.7951 0 0 0 t 0 0 0 0 0 22.7337 31.9738 7.6011 11.3255 23.0192 34.2138 39.7053 39.7132 0 0 0

M01679_2.00_shift5 (M01679_2.00)
; positions_6nt_m1 versus M01679_2.00; m=33/96; ncol2=8; w=0; offset=0; strand=D; shift=5; score=0.565716; -----WWAwAwAT--- ; cor=; Ncor= a 0 0 0 0 0 72.3485 72.1698 75.621 64.8218 86.4201 32.4244 89.1199 6.27341 0 0 0 c 0 0 0 0 0 0.0344353 0.0277469 0.0269978 0.0269978 0.0269978 0.0269978 0.0269978 0.031211 0 0 0 g 0 0 0 0 0 0.0344353 0.0277469 0.0269978 0.0269978 0.0269978 0.0269978 0.0269978 0.031211 0 0 0 t 0 0 0 0 0 27.5826 27.7747 24.3251 35.1242 13.5259 67.5216 10.8261 93.6642 0 0 0

M00693_2.00_rc_shift3 (nhr-65_rc)
; positions_6nt_m1 versus M00693_2.00_rc (nhr-65_rc); m=34/96; ncol2=12; w=-2; offset=-2; strand=R; shift=3; score=0.564112; ---gracACAAAtww- ; cor=; Ncor= a 0 0 0 20.3459 38.9657 54.1405 16.4857 99.9502 8.94392 91.0229 72.5384 85.9879 17.1432 31.6263 29.4382 0 c 0 0 0 20.3459 17.2656 12.1602 65.7074 0.0166049 70.0136 0.0166049 18.633 4.67071 7.75104 21.6517 20.5109 0 g 0 0 0 38.9623 26.5032 12.1602 4.50575 0.0166049 0.0166049 0.0166049 0.0166049 4.67071 7.75104 12.8564 20.5109 0 t 0 0 0 20.3459 17.2656 21.5391 13.3011 0.0166049 21.0258 8.94392 8.81195 4.67071 67.3547 33.8656 29.5401 0

M02745_2.00_shift3 (mef-2)
; positions_6nt_m1 versus M02745_2.00 (mef-2); m=35/96; ncol2=12; w=-2; offset=-2; strand=D; shift=3; score=0.563357; ---TaCTAwAAATAG- ; cor=; Ncor= a 0 0 0 2.00391 61.8663 0.100301 0.100301 99.5994 62.6062 97.5478 96.6942 99.7492 0 99.6493 0.447761 0 c 0 0 0 0.342131 0.870918 99.7492 0.0501505 0.0500751 0.125905 0 0.194458 0.0501505 0.0501505 0.250501 0.149254 0 g 0 0 0 0.439883 12.4106 0.100301 0.100301 0.2003 0.283286 0.147131 0.0486145 0.150451 0.200602 0.0501002 98.9552 0 t 0 0 0 97.2141 24.8523 0.0501505 99.7492 0.150225 36.9846 2.30505 3.06271 0.0501505 99.7492 0.0501002 0.447761 0

M07295_2.00_shift4 (lin-54)
; positions_6nt_m1 versus M07295_2.00 (lin-54); m=36/96; ncol2=15; w=-1; offset=-1; strand=D; shift=4; score=0.561745; ----WTwaAAwATTyA ; cor=; Ncor= a 0 0 0 0 26.2982 24.1206 39.6985 60.9715 77.5544 93.6348 56.2814 82.0771 0 0 0 86.2647 c 0 0 0 0 2.0101 3.3501 18.7605 8.2077 10.8878 0 2.1776 0 0 0 32.4958 0 g 0 0 0 0 3.1826 1.34 2.6801 7.5377 3.0151 5.0251 16.0804 2.6801 0 0 0 13.7353 t 0 0 0 0 68.5092 71.1893 38.861 23.2831 8.5427 1.34 25.4606 15.2429 100 100 67.5042 0

M01107_2.00_shift5 (M01107_2.00)
; positions_6nt_m1 versus M01107_2.00; m=37/96; ncol2=8; w=0; offset=0; strand=D; shift=5; score=0.553614; -----aAawwAww--- ; cor=; Ncor= a 0 0 0 0 0 62.5139 68.9816 66.0471 52.4467 52.5023 76.1535 59.0061 34.2342 0 0 0 c 0 0 0 0 0 1.48496 7.95531 3.00527 2.77263 3.1609 4.77193 5.04118 2.78215 0 0 0 g 0 0 0 0 0 17.9105 10.9555 6.89205 3.5247 3.03696 4.44932 4.21075 4.82217 0 0 0 t 0 0 0 0 0 18.0905 12.1077 24.0556 41.256 41.2998 14.6253 31.742 58.1615 0 0 0

M01685_2.00_shift5 (M01685_2.00)
; positions_6nt_m1 versus M01685_2.00; m=38/96; ncol2=8; w=0; offset=0; strand=D; shift=5; score=0.55177; -----mrrdwWww--- ; cor=; Ncor= a 0 0 0 0 0 29.5752 25.6034 36.9207 33.4398 40.8108 71.6329 60.4747 27.0214 0 0 0 c 0 0 0 0 0 28.9896 24.8467 13.996 13.3264 8.15758 0.214715 0.0299635 13.5533 0 0 0 g 0 0 0 0 0 22.5771 26.3831 27.3515 25.0218 17.6185 0.170598 13.9047 7.66473 0 0 0 t 0 0 0 0 0 18.858 23.1669 21.7317 28.212 33.4131 27.9818 25.5906 51.7606 0 0 0

M09404_2.00_shift6 (sox-2,sox-3,sox-4)
; positions_6nt_m1 versus M09404_2.00 (sox-2,sox-3,sox-4); m=39/96; ncol2=8; w=0; offset=1; strand=D; shift=6; score=0.551338; ------wAACAATr-- ; cor=; Ncor= a 0 0 0 0 0 0 33.5297 88.0865 93.6035 2.26177 97.7382 90.0852 6.78532 39.665 0 0 c 0 0 0 0 0 0 13.0836 2.13612 0 89.9595 0 6.52219 5.78009 16.0109 0 0 g 0 0 0 0 0 0 15.6085 4.26041 5.26565 3.39266 1.13089 3.39266 0 31.2032 0 0 t 0 0 0 0 0 0 37.7783 5.51695 1.13089 4.38607 1.13089 0 87.4346 13.1209 0 0

M09390_2.00_shift6 (sox-2,sox-3,sox-4)
; positions_6nt_m1 versus M09390_2.00 (sox-2,sox-3,sox-4); m=40/96; ncol2=8; w=0; offset=1; strand=D; shift=6; score=0.551338; ------wAACAATr-- ; cor=; Ncor= a 0 0 0 0 0 0 33.5297 88.0865 93.6035 2.26177 97.7382 90.0852 6.78532 39.665 0 0 c 0 0 0 0 0 0 13.0836 2.13612 0 89.9595 0 6.52219 5.78009 16.0109 0 0 g 0 0 0 0 0 0 15.6085 4.26041 5.26565 3.39266 1.13089 3.39266 0 31.2032 0 0 t 0 0 0 0 0 0 37.7783 5.51695 1.13089 4.38607 1.13089 0 87.4346 13.1209 0 0

M01688_2.00_shift6 (M01688_2.00)
; positions_6nt_m1 versus M01688_2.00; m=41/96; ncol2=8; w=0; offset=1; strand=D; shift=6; score=0.548728; ------awwwAwww-- ; cor=; Ncor= a 0 0 0 0 0 0 41.2581 38.386 41.1062 44.2483 80.5888 50.8656 34.0689 31.0543 0 0 c 0 0 0 0 0 0 18.1714 15.1453 4.28945 11.5862 0.182567 0.117559 7.60179 19.409 0 0 g 0 0 0 0 0 0 20.4881 18.3145 19.224 5.3112 7.76293 6.95309 6.47782 14.5231 0 0 t 0 0 0 0 0 0 20.0825 28.1541 35.3804 38.8542 11.4657 42.0638 51.8515 35.0136 0 0

M09102_2.00_shift6 (fkh-2)
; positions_6nt_m1 versus M09102_2.00 (fkh-2); m=42/96; ncol2=13; w=0; offset=1; strand=D; shift=6; score=0.547056; ------wAAmmATAAA ; cor=; Ncor= a 0 0 0 0 0 0 43.2642 96.7191 91.8097 63.0299 45.6508 92.8887 14.4831 81.5473 100 99.8926 c 0 0 0 0 0 0 13.8458 1.68075 2.91214 32.5679 43.021 0 3.69269 17.5693 0 0 g 0 0 0 0 0 0 7.03788 1.01355 0 0 0 7.11126 0 0 0 0 t 0 0 0 0 0 0 35.8521 0.586565 5.27816 4.40217 11.3282 0 81.8242 0.883421 0 0.107382

M09098_2.00_shift6 (fkh-2)
; positions_6nt_m1 versus M09098_2.00 (fkh-2); m=43/96; ncol2=13; w=0; offset=1; strand=D; shift=6; score=0.547056; ------wAAmmATAAA ; cor=; Ncor= a 0 0 0 0 0 0 43.2642 96.7191 91.8097 63.0299 45.6508 92.8887 14.4831 81.5473 100 99.8926 c 0 0 0 0 0 0 13.8458 1.68075 2.91214 32.5679 43.021 0 3.69269 17.5693 0 0 g 0 0 0 0 0 0 7.03788 1.01355 0 0 0 7.11126 0 0 0 0 t 0 0 0 0 0 0 35.8521 0.586565 5.27816 4.40217 11.3282 0 81.8242 0.883421 0 0.107382

M00829_2.00_shift6 (sox-2,sox-3,sox-4)
; positions_6nt_m1 versus M00829_2.00 (sox-2,sox-3,sox-4); m=44/96; ncol2=8; w=0; offset=1; strand=D; shift=6; score=0.546673; ------wAACAATr-- ; cor=; Ncor= a 0 0 0 0 0 0 26.087 80.6452 91.4286 2.85714 91.4286 91.4286 2.85714 32 0 0 c 0 0 0 0 0 0 17.3913 3.22581 2.85714 88.5714 2.85714 2.85714 2.85714 12 0 0 g 0 0 0 0 0 0 13.0435 3.22581 2.85714 2.85714 2.85714 2.85714 2.85714 36 0 0 t 0 0 0 0 0 0 43.4783 12.9032 2.85714 5.71429 2.85714 2.85714 91.4286 20 0 0

M06203_2.00_shift1 (fkh-7)
; positions_6nt_m1 versus M06203_2.00 (fkh-7); m=45/96; ncol2=15; w=-4; offset=-4; strand=D; shift=1; score=0.541799; -mmmmarAAAAAAwsm ; cor=; Ncor= a 0 33.7066 33.6656 32.2296 31.5673 42.1634 49.3377 96.0265 99.5585 100 99.117 100 98.6755 44.9227 12.792 29.2035 c 0 27.8835 32.2259 26.4901 27.8146 21.0817 5.96026 0 0 0 0 0 0.993377 7.28477 37.3749 38.4324 g 0 24.86 19.0476 20.9713 20.3091 15.011 31.7881 0.993377 0 0 0.883002 0 0.331126 3.31126 34.2603 15.4235 t 0 13.5498 15.0609 20.3091 20.3091 21.7439 12.9139 2.98013 0.441501 0 0 0 0 44.4812 15.5729 16.9406

M00212_2.00_shift6 (sox-2,sox-3,sox-4)
; positions_6nt_m1 versus M00212_2.00 (sox-2,sox-3,sox-4); m=46/96; ncol2=8; w=0; offset=1; strand=D; shift=6; score=0.537689; ------rAACAATw-- ; cor=; Ncor= a 0 0 0 0 0 0 25 91.4452 99.7699 0.0766871 99.7699 99.7699 0.0766871 55.4204 0 0 c 0 0 0 0 0 0 0.124378 0.0830565 0.0766871 99.7699 0.0766871 0.0766871 0.0766871 0.110619 0 0 g 0 0 0 0 0 0 62.3134 8.3887 0.0766871 0.0766871 0.0766871 0.0766871 0.0766871 0.110619 0 0 t 0 0 0 0 0 0 12.5622 0.0830565 0.0766871 0.0766871 0.0766871 0.0766871 99.7699 44.3584 0 0

M01517_2.00_shift5 (M01517_2.00)
; positions_6nt_m1 versus M01517_2.00; m=47/96; ncol2=8; w=0; offset=0; strand=D; shift=5; score=0.534723; -----wawwwAww--- ; cor=; Ncor= a 0 0 0 0 0 34.0141 40.2816 39.9077 33.2385 55.6169 80.1022 51.6361 29.702 0 0 0 c 0 0 0 0 0 17.7569 18.8384 14.6812 10.5245 0.0482426 0.0213501 0.0220205 7.4724 0 0 0 g 0 0 0 0 0 21.4725 22.7803 20.2179 16.8392 10.2624 1.08687 0.196758 6.49619 0 0 0 t 0 0 0 0 0 26.7564 18.0997 25.1931 39.3978 34.0724 18.7896 48.1452 56.3294 0 0 0

M01692_2.00_shift5 (M01692_2.00)
; positions_6nt_m1 versus M01692_2.00; m=48/96; ncol2=8; w=0; offset=0; strand=D; shift=5; score=0.534651; -----mdrawaRt--- ; cor=; Ncor= a 0 0 0 0 0 31.8198 25.6386 32.2138 33.0083 35.3662 54.031 70.8523 21.6909 0 0 0 c 0 0 0 0 0 26.3137 20.168 19.5387 19.0441 15.5764 7.23955 0.00976059 22.8031 0 0 0 g 0 0 0 0 0 21.979 26.4194 25.0882 23.4943 21.2373 15.6357 29.0959 10.0432 0 0 0 t 0 0 0 0 0 19.8875 27.774 23.1593 24.4532 27.8201 23.0937 0.0420287 45.4628 0 0 0

M00750_2.00_shift5 (M00750_2.00)
; positions_6nt_m1 versus M00750_2.00; m=49/96; ncol2=8; w=0; offset=0; strand=D; shift=5; score=0.531032; -----AAAwAaAt--- ; cor=; Ncor= a 0 0 0 0 0 75 80 73.3333 26.6667 73.3333 66.6667 69.2308 16.6667 0 0 0 c 0 0 0 0 0 8.33333 6.66667 6.66667 6.66667 6.66667 6.66667 7.69231 8.33333 0 0 0 g 0 0 0 0 0 8.33333 6.66667 6.66667 6.66667 6.66667 6.66667 7.69231 8.33333 0 0 0 t 0 0 0 0 0 8.33333 6.66667 13.3333 60 13.3333 20 15.3846 66.6667 0 0 0

M00203_2.00_rc_shift5 (sox-2,sox-3,sox-4_rc)
; positions_6nt_m1 versus M00203_2.00_rc (sox-2,sox-3,sox-4_rc); m=50/96; ncol2=8; w=0; offset=0; strand=R; shift=5; score=0.529459; -----rrrAcAAT--- ; cor=; Ncor= a 0 0 0 0 0 32.506 26.7073 47.1419 84.5992 4.87858 95.8464 84.7024 15.0993 0 0 0 c 0 0 0 0 0 17.6621 16.6921 13.9177 3.41414 67.6843 0.0489354 3.66616 7.49807 0 0 0 g 0 0 0 0 0 28.2593 34.2928 27.1985 3.58919 11.0768 0.534057 10.2692 6.26292 0 0 0 t 0 0 0 0 0 21.5726 22.3078 11.7419 8.39743 16.3603 3.57065 1.36226 71.1397 0 0 0

M00206_2.00_shift5 (sox-2,sox-3,sox-4)
; positions_6nt_m1 versus M00206_2.00 (sox-2,sox-3,sox-4); m=51/96; ncol2=8; w=0; offset=0; strand=D; shift=5; score=0.529371; -----araAcAAT--- ; cor=; Ncor= a 0 0 0 0 0 32.9744 31.5975 38.7559 69.6768 4.65359 99.7612 90.2273 22.1148 0 0 0 c 0 0 0 0 0 19.604 16.1687 18.491 5.8936 50.7869 0.129093 5.43213 3.54751 0 0 0 g 0 0 0 0 0 24.185 28.5906 21.4834 5.44048 19.8388 0.0814944 4.31601 3.08406 0 0 0 t 0 0 0 0 0 23.2367 23.6432 21.2697 18.9891 24.7207 0.0282342 0.0245347 71.2537 0 0 0

M07298_2.00_shift4 (lin-54)
; positions_6nt_m1 versus M07298_2.00 (lin-54); m=52/96; ncol2=15; w=-1; offset=-1; strand=D; shift=4; score=0.52881; ----wTwwAAAATTYA ; cor=; Ncor= a 0 0 0 0 32 15.8333 27.8333 36.5 73.5 90.5 77.6667 80.6667 0 0 0 80.3333 c 0 0 0 0 2.8333 2.6667 6.1667 11.5 9 0 0.5 0 0 0 28.1667 0 g 0 0 0 0 4.5 1 1.1667 7.6667 11.6667 7.1667 11 3.8333 0 0 0 19.6667 t 0 0 0 0 60.6667 80.5 64.8333 44.3333 5.8333 2.3333 10.8333 15.5 100 100 71.8333 0

M00197_2.00_shift5 (sox-2,sox-3,sox-4)
; positions_6nt_m1 versus M00197_2.00 (sox-2,sox-3,sox-4); m=53/96; ncol2=8; w=0; offset=0; strand=D; shift=5; score=0.527887; -----rrawcAAT--- ; cor=; Ncor= a 0 0 0 0 0 31.2219 31.5226 42.5231 60.2919 5.82109 97.1833 89.0196 18.0233 0 0 0 c 0 0 0 0 0 20.108 16.1304 16.6107 4.30251 50.4755 1.64312 3.12319 5.21565 0 0 0 g 0 0 0 0 0 25.3079 28.5228 21.7594 2.97189 24.569 0.0386425 7.837 4.40026 0 0 0 t 0 0 0 0 0 23.3622 23.8242 19.1068 32.4337 19.1344 1.13496 0.0202188 72.3608 0 0 0

M00209_2.00_shift5 (sox-2,sox-3,sox-4)
; positions_6nt_m1 versus M00209_2.00 (sox-2,sox-3,sox-4); m=54/96; ncol2=8; w=0; offset=0; strand=D; shift=5; score=0.52492; -----araAcAAT--- ; cor=; Ncor= a 0 0 0 0 0 29.8569 31.925 35.7639 67.9599 5.68531 93.1608 86.9014 18.3811 0 0 0 c 0 0 0 0 0 21.2512 17.5208 19.239 5.52298 55.5835 1.19045 2.62419 5.99739 0 0 0 g 0 0 0 0 0 24.6904 26.666 23.7347 5.63455 18.6881 0.0957828 8.1236 4.71771 0 0 0 t 0 0 0 0 0 24.2015 23.8883 21.2624 20.8826 20.0431 5.55294 2.35084 70.9038 0 0 0

M00204_2.00_shift5 (sox-2,sox-3,sox-4)
; positions_6nt_m1 versus M00204_2.00 (sox-2,sox-3,sox-4); m=55/96; ncol2=8; w=0; offset=0; strand=D; shift=5; score=0.524412; -----arawcAAT--- ; cor=; Ncor= a 0 0 0 0 0 30.4046 31.6486 34.7135 59.5861 7.84313 88.3669 90.2298 18.2652 0 0 0 c 0 0 0 0 0 20.7925 18.2597 19.436 7.2967 50.3822 2.53831 3.19747 6.32809 0 0 0 g 0 0 0 0 0 24.1575 26.1721 22.5814 6.34345 22.8657 0.0562189 5.48688 4.24185 0 0 0 t 0 0 0 0 0 24.6455 23.9195 23.2691 26.7738 18.909 9.03854 1.08585 71.1648 0 0 0

M07299_2.00_shift3 (lin-54)
; positions_6nt_m1 versus M07299_2.00 (lin-54); m=56/96; ncol2=15; w=-2; offset=-2; strand=D; shift=3; score=0.518973; ---wwwTwaAAATTYA ; cor=; Ncor= a 0 0 0 51.5152 36.7424 26.8939 20.4545 32.5758 60.6061 86.3636 87.8788 92.4242 0 0 0 81.0606 c 0 0 0 5.6818 3.4091 4.1667 2.2727 14.3939 9.8485 0 0.3788 0 3.0303 0 26.1364 0 g 0 0 0 10.6061 10.6061 3.0303 3.4091 5.6818 15.5303 13.2576 6.0606 0 1.1364 0 0 17.0455 t 0 0 0 32.197 49.2424 65.9091 73.8636 47.3485 14.0152 0.3788 5.6818 7.5758 95.8333 100 73.8636 1.8939

M01677_2.00_shift5 (M01677_2.00)
; positions_6nt_m1 versus M01677_2.00; m=57/96; ncol2=8; w=0; offset=0; strand=D; shift=5; score=0.517901; -----mkrawaRh--- ; cor=; Ncor= a 0 0 0 0 0 37.7279 24.75 34.3177 34.0293 34.6936 57.6007 73.2846 25.3553 0 0 0 c 0 0 0 0 0 27.1235 20.2636 17.7371 17.7648 15.4337 3.33187 0.000129006 25.8675 0 0 0 g 0 0 0 0 0 19.4997 27.0808 25.1702 24.4645 21.4679 17.8773 26.6916 6.12874 0 0 0 t 0 0 0 0 0 15.6489 27.9056 22.7749 23.7414 28.4048 21.1901 0.0236203 42.6484 0 0 0

M01691_2.00_shift6 (athp-3)
; positions_6nt_m1 versus M01691_2.00 (athp-3); m=58/96; ncol2=7; w=0; offset=1; strand=D; shift=6; score=0.516459; ------mrwwwat--- ; cor=; Ncor= a 0 0 0 0 0 0 27.2989 31.1542 40.9498 46.4798 58.2238 57.604 23.5345 0 0 0 c 0 0 0 0 0 0 27.5733 19.0859 10.6158 9.57368 12.8622 0.0723378 21.2949 0 0 0 g 0 0 0 0 0 0 24.7011 25.2531 18.3999 15.4718 1.41099 22.9563 4.84751 0 0 0 t 0 0 0 0 0 0 20.4268 24.5068 30.0345 28.4747 27.503 19.3674 50.3232 0 0 0

M10935_2.00_shift3 (mef-2)
; positions_6nt_m1 versus M10935_2.00 (mef-2); m=59/96; ncol2=16; w=-2; offset=-2; strand=D; shift=3; score=0.515156; ---cTCTAAAAATAAC ; cor=; Ncor= a 0 0 0 0 0 0 0 100 100 100 100 100 0 100 100 0 c 0 0 0 60 0 80 0 0 0 0 0 0 0 0 0 100 g 0 0 0 20 20 0 0 0 0 0 0 0 0 0 0 0 t 0 0 0 20 80 20 100 0 0 0 0 0 100 0 0 0

M02945_2.00_rc_shift6 (M02945_2.00_rc)
; positions_6nt_m1 versus M02945_2.00_rc; m=60/96; ncol2=14; w=0; offset=1; strand=R; shift=6; score=0.515115; ------aaAAAATCrA ; cor=; Ncor= a 0 0 0 0 0 0 46.6941 63.3388 78.6546 80.1476 97.0626 99.0712 0.513726 0.37637 64.6375 99.3951 c 0 0 0 0 0 0 16.8092 6.23355 3.54463 2.28052 0.446999 0.081473 1.65356 99.4927 0.327279 0.0980873 g 0 0 0 0 0 0 22.8289 18.7664 6.44243 1.4764 1.62835 0.668079 0.224755 0.0490918 34.8552 0.147131 t 0 0 0 0 0 0 13.6678 11.6612 11.3583 16.0954 0.862069 0.179241 97.608 0.0818197 0.180003 0.359653

M01226_2.00_shift7 (M01226_2.00)
; positions_6nt_m1 versus M01226_2.00; m=61/96; ncol2=8; w=0; offset=2; strand=D; shift=7; score=0.514802; -------aAwAACAw- ; cor=; Ncor= a 0 0 0 0 0 0 0 52.7071 80.9169 65.5996 98.3916 99.9532 4.70019 96.8301 57.4675 0 c 0 0 0 0 0 0 0 23.6374 1.60216 9.38476 1.57714 0.0156152 78.0918 0.0156152 7.51748 0 g 0 0 0 0 0 0 0 23.6374 0.0158629 0.0156152 0.0156152 0.0156152 0.0156152 0.0156152 7.51748 0 t 0 0 0 0 0 0 0 0.0181686 17.4651 25 0.0156152 0.0156152 17.1924 3.13866 27.4975 0

M00607_2.00_shift5 (hpo-39)
; positions_6nt_m1 versus M00607_2.00 (hpo-39); m=62/96; ncol2=8; w=0; offset=0; strand=D; shift=5; score=0.512513; -----AwATWAAT--- ; cor=; Ncor= a 0 0 0 0 0 87.3441 66.5973 92.2043 11.5591 73.0031 92.2043 87.396 15.8088 0 0 0 c 0 0 0 0 0 6.29676 0.0415973 0.0384025 0.0384025 0.0384025 0.0384025 0.0415973 0.052521 0 0 0 g 0 0 0 0 0 0.0623441 4.20133 0.0384025 0.0384025 0.0384025 0.0384025 0.0415973 0.052521 0 0 0 t 0 0 0 0 0 6.29676 29.1597 7.71889 88.3641 26.9201 7.71889 12.5208 84.0861 0 0 0

M03735_2.00_shift6 (M03735_2.00)
; positions_6nt_m1 versus M03735_2.00; m=63/96; ncol2=13; w=0; offset=1; strand=D; shift=6; score=0.503934; ------wwAsAATAAy ; cor=; Ncor= a 0 0 0 0 0 0 48.8673 63.2653 98.4127 10.3718 91.9881 97.4843 6.12245 99.359 96.5732 0 c 0 0 0 0 0 0 20.0647 0.816327 0 60.6654 1.48368 0.628931 3.49854 0 0 49.0323 g 0 0 0 0 0 0 1.94175 0 1.5873 26.8102 4.74777 1.88679 0 0.641026 1.55763 0 t 0 0 0 0 0 0 29.1262 35.9184 0 2.15264 1.78042 0 90.379 0 1.86916 50.9677

M01105_2.00_shift4 (M01105_2.00)
; positions_6nt_m1 versus M01105_2.00; m=64/96; ncol2=9; w=-1; offset=-1; strand=D; shift=4; score=0.501984; ----waarwwwww--- ; cor=; Ncor= a 0 0 0 0 37.434 33.1918 36.7239 39.8201 30.6146 57.2249 60.2371 50.597 33.1768 0 0 0 c 0 0 0 0 17.3324 23.625 21.1878 10.6374 17.3133 0.213737 9.28396 4.82539 9.60085 0 0 0 g 0 0 0 0 18.5892 21.5916 19.3642 25.3904 15.0515 14.9841 4.47402 5.95298 10.6106 0 0 0 t 0 0 0 0 26.6444 21.5916 22.7241 24.1521 37.0206 27.5772 26.005 38.6247 46.6117 0 0 0

M02719_2.00_shift6 (sox-2,sox-3,sox-4)
; positions_6nt_m1 versus M02719_2.00 (sox-2,sox-3,sox-4); m=65/96; ncol2=7; w=0; offset=1; strand=D; shift=6; score=0.493456; ------wAACAAT--- ; cor=; Ncor= a 0 0 0 0 0 0 34.7826 91.3043 95.6522 0 100 95.6522 0 0 0 0 c 0 0 0 0 0 0 17.3913 0 0 95.6522 0 4.34783 0 0 0 0 g 0 0 0 0 0 0 13.0435 4.34783 4.34783 0 0 0 0 0 0 0 t 0 0 0 0 0 0 34.7826 4.34783 0 4.34783 0 0 100 0 0 0

M02942_2.00_rc_shift6 (M02942_2.00_rc)
; positions_6nt_m1 versus M02942_2.00_rc; m=66/96; ncol2=14; w=0; offset=1; strand=R; shift=6; score=0.490334; ------aaaAAATCrA ; cor=; Ncor= a 0 0 0 0 0 0 43.2296 57.3412 67.6722 74.0118 94.2155 98.9596 0.332917 0.251151 37.3016 98.9596 c 0 0 0 0 0 0 18.7132 8.07741 7.22823 4.8864 0.475436 0.0416146 0.332917 99.5396 0.668338 0.0832293 g 0 0 0 0 0 0 22.6661 21.666 10.6716 2.58326 4.51664 0.749064 0.374532 0 62.0301 0.0416146 t 0 0 0 0 0 0 15.3911 12.9154 14.428 18.5185 0.792393 0.249688 98.9596 0.209293 0 0.915522

M02943_2.00_rc_shift6 (M02943_2.00_rc)
; positions_6nt_m1 versus M02943_2.00_rc; m=67/96; ncol2=14; w=0; offset=1; strand=R; shift=6; score=0.486149; ------aaaAAATCrA ; cor=; Ncor= a 0 0 0 0 0 0 43.0324 52.2256 66.4985 72.4441 94.6952 99.3842 0.151191 0.226757 46.9267 99.5594 c 0 0 0 0 0 0 17.3875 9.01619 6.92903 4.28728 0.287391 0.125676 0.125992 99.6221 0.164079 0.0881279 g 0 0 0 0 0 0 24.4815 23.6975 10.8308 2.51924 4.69405 0.301621 0.0881945 0.113379 52.884 0.0251794 t 0 0 0 0 0 0 15.0986 15.0607 15.7417 20.7494 0.323315 0.188513 99.6346 0.0377929 0.025243 0.327332

M02944_2.00_rc_shift6 (M02944_2.00_rc)
; positions_6nt_m1 versus M02944_2.00_rc; m=68/96; ncol2=14; w=0; offset=1; strand=R; shift=6; score=0.482359; ------aaaAAATCrA ; cor=; Ncor= a 0 0 0 0 0 0 38.7567 52.1882 64.8704 75.3566 95.3981 99.9343 0 0 37.0039 99.8687 c 0 0 0 0 0 0 23.4328 10.3562 8.00648 4.82369 0 0.0131354 0.0262605 99.9343 0 0 g 0 0 0 0 0 0 22.0397 22.434 12.986 1.28764 4.5768 0.0394063 0.0787815 0 62.9698 0 t 0 0 0 0 0 0 15.7708 15.0217 14.1371 18.5321 0.0250784 0.0131354 99.895 0.0656771 0.0262812 0.131268

M00008_2.00_shift7 (M00008_2.00)
; positions_6nt_m1 versus M00008_2.00; m=69/96; ncol2=7; w=0; offset=2; strand=D; shift=7; score=0.480756; -------awwaaww-- ; cor=; Ncor= a 0 0 0 0 0 0 0 28.2959 31.6659 37.7778 61.6393 67.5764 32.6032 32.1153 0 0 c 0 0 0 0 0 0 0 24.8465 18.4532 11.2652 6.89847 4.27703 13.3887 13.7266 0 0 g 0 0 0 0 0 0 0 24.5993 23.6944 20.9413 11.1484 6.31709 8.20227 11.2384 0 0 t 0 0 0 0 0 0 0 22.2583 26.1864 30.0157 20.3138 21.8294 45.8058 42.9198 0 0

M01686_2.00_shift4 (M01686_2.00)
; positions_6nt_m1 versus M01686_2.00; m=70/96; ncol2=9; w=-1; offset=-1; strand=D; shift=4; score=0.476664; ----wwawwwAww--- ; cor=; Ncor= a 0 0 0 0 35.3239 29.1909 47.9754 35.3839 43.2302 38.9749 86.2322 51.9591 36.5816 0 0 0 c 0 0 0 0 18.4407 20.986 15.3435 15.7408 7.07479 10.0033 0.0496401 3.38873 9.29563 0 0 0 g 0 0 0 0 20.585 17.8831 20.7115 19.6143 19.2313 6.1899 8.47435 8.76228 8.08123 0 0 0 t 0 0 0 0 25.6504 31.9399 15.9696 29.261 30.4638 44.8318 5.24379 35.8899 46.0416 0 0 0

M02717_2.00_shift4 (sox-2,sox-3,sox-4)
; positions_6nt_m1 versus M02717_2.00 (sox-2,sox-3,sox-4); m=71/96; ncol2=9; w=-1; offset=-1; strand=D; shift=4; score=0.476553; ----kwwaACAAw--- ; cor=; Ncor= a 0 0 0 0 17.8571 28.5714 53.5714 64.2857 89.2857 0 100 96.4286 25 0 0 0 c 0 0 0 0 17.8571 10.7143 0 10.7143 0 92.8571 0 0 0 0 0 0 g 0 0 0 0 35.7143 14.2857 10.7143 10.7143 0 0 0 3.57143 7.14286 0 0 0 t 0 0 0 0 28.5714 46.4286 35.7143 14.2857 10.7143 7.14286 0 0 67.8571 0 0 0

M00828_2.00_rc_shift4 (sox-2,sox-3,sox-4_rc)
; positions_6nt_m1 versus M00828_2.00_rc (sox-2,sox-3,sox-4_rc); m=72/96; ncol2=9; w=-1; offset=-1; strand=R; shift=4; score=0.476214; ----bawaACAAt--- ; cor=; Ncor= a 0 0 0 0 22.932 30.6651 31.7338 47.8087 73.8615 3.64576 80.4595 75.1248 18.6787 0 0 0 c 0 0 0 0 26.378 22.2674 16.2384 14.6906 5.06418 69.6557 5.1436 6.22859 8.73542 0 0 0 g 0 0 0 0 25.5984 22.9455 24.7143 22.8102 6.31035 9.52162 5.91655 12.418 6.73546 0 0 0 t 0 0 0 0 25.0916 24.122 27.3135 14.6906 14.764 17.1769 8.48037 6.22859 65.8504 0 0 0

M00208_2.00_rc_shift4 (sox-2,sox-3,sox-4_rc)
; positions_6nt_m1 versus M00208_2.00_rc (sox-2,sox-3,sox-4_rc); m=73/96; ncol2=9; w=-1; offset=-1; strand=R; shift=4; score=0.475817; ----varaacAAt--- ; cor=; Ncor= a 0 0 0 0 25.2444 29.7331 31.449 34.8399 60.3397 7.68003 87.0814 82.9432 22.913 0 0 0 c 0 0 0 0 25.2444 21.8077 18.1445 20.507 7.76783 47.8765 2.08933 5.51877 8.01813 0 0 0 g 0 0 0 0 25.4981 24.8352 27.3404 22.4382 7.8459 20.6688 3.0859 8.74215 8.01813 0 0 0 t 0 0 0 0 24.0132 23.624 23.0661 22.2149 24.0465 23.7747 7.74342 2.7959 61.0507 0 0 0

M00826_2.00_shift4 (sox-2,sox-3,sox-4)
; positions_6nt_m1 versus M00826_2.00 (sox-2,sox-3,sox-4); m=74/96; ncol2=9; w=-1; offset=-1; strand=D; shift=4; score=0.474506; ----kwdawcAAt--- ; cor=; Ncor= a 0 0 0 0 23.0159 31.9141 28.4237 44.9142 55.0439 5.56972 79.5184 73.9025 15.9169 0 0 0 c 0 0 0 0 21.0349 20.3493 18.3059 17.0262 5.09434 54.4534 6.93089 11.2768 12.2728 0 0 0 g 0 0 0 0 28.3942 21.6076 26.7684 18.0791 6.80822 21.4848 4.73977 11.3901 5.29828 0 0 0 t 0 0 0 0 27.555 26.129 26.5021 19.9805 33.0536 18.4921 8.81089 3.43064 66.512 0 0 0

M00639_2.00_rc_shift3 (C46E10.8_rc)
; positions_6nt_m1 versus M00639_2.00_rc (C46E10.8_rc); m=75/96; ncol2=10; w=-2; offset=-2; strand=R; shift=3; score=0.472622; ---GgkyadrAaw--- ; cor=; Ncor= a 0 0 0 14.9161 12.826 16.9301 19.6316 45.4968 25.6448 44.2381 74.5743 66.9747 27.222 0 0 0 c 0 0 0 6.70225 11.49 22.4007 31.0979 23.5151 8.97408 6.81814 5.5389 4.592 2.12554 0 0 0 g 0 0 0 70.2769 61.6501 32.7562 5.14045 22.593 27.5043 29.6537 10.0925 5.2295 5.02299 0 0 0 t 0 0 0 8.10469 14.0339 27.913 44.13 8.39505 37.8769 19.29 9.79426 23.2038 65.6295 0 0 0

M06325_2.00_rc_shift10 (alr-1,ceh-1,ceh-10,ceh-12,ceh-13,ceh-14,ceh-16,ceh-17,ceh-2,ceh-43,ceh-8,dsc-1,lim-6,lin-11,mec-3,tab-1,ttx-3,unc-4,unc-42,vab-15_rc)
; positions_6nt_m1 versus M06325_2.00_rc (alr-1,ceh-1,ceh-10,ceh-12,ceh-13,ceh-14,ceh-16,ceh-17,ceh-2,ceh-43,ceh-8,dsc-1,lim-6,lin-11,mec-3,tab-1,ttx-3,unc-4,unc-42,vab-15_rc); m=76/96; ncol2=6; w=0; offset=5; strand=R; shift=10; score=0.471239; ----------AATTAd ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 88.2353 94.1176 0 11.7647 94.1176 41.1765 c 0 0 0 0 0 0 0 0 0 0 5.88235 0 5.88235 0 0 0 g 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 29.4118 t 0 0 0 0 0 0 0 0 0 0 5.88235 5.88235 94.1176 88.2353 5.88235 29.4118

M06525_2.00_rc_shift9 (alr-1,ceh-1,ceh-10,ceh-12,ceh-13,ceh-14,ceh-16,ceh-17,ceh-2,ceh-43,ceh-8,dsc-1,lim-6,lin-11,mec-3,tab-1,ttx-3,unc-4,unc-42,vab-15_rc)
; positions_6nt_m1 versus M06525_2.00_rc (alr-1,ceh-1,ceh-10,ceh-12,ceh-13,ceh-14,ceh-16,ceh-17,ceh-2,ceh-43,ceh-8,dsc-1,lim-6,lin-11,mec-3,tab-1,ttx-3,unc-4,unc-42,vab-15_rc); m=77/96; ncol2=7; w=0; offset=4; strand=R; shift=9; score=0.463925; ---------tAATTAr ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 23.5294 88.2353 100 0 5.88235 100 41.1765 c 0 0 0 0 0 0 0 0 0 23.5294 5.88235 0 0 0 0 0 g 0 0 0 0 0 0 0 0 0 5.88235 0 0 0 0 0 35.2941 t 0 0 0 0 0 0 0 0 0 47.0588 5.88235 0 100 94.1176 0 23.5294

M03046_2.00_shift4 (fkh-2)
; positions_6nt_m1 versus M03046_2.00 (fkh-2); m=78/96; ncol2=8; w=-1; offset=-1; strand=D; shift=4; score=0.460672; ----rTAAAcAA---- ; cor=; Ncor= a 0 0 0 0 45.3438 12.9527 91.046 92.2151 90.047 23.4165 99.3945 70.5774 0 0 0 0 c 0 0 0 0 0 4.91099 3.56577 0.963082 0 55.1344 0 9.09091 0 0 0 0 g 0 0 0 0 54.6562 11.6022 3.09033 2.16693 4.62382 14.3954 0.605536 7.55528 0 0 0 0 t 0 0 0 0 0 70.5341 2.29794 4.6549 5.32915 7.05374 0 12.7764 0 0 0 0

M00501_2.00_rc_shift9 (alr-1,ceh-1,ceh-10,ceh-12,ceh-13,ceh-14,ceh-16,ceh-17,ceh-2,ceh-30,ceh-31,ceh-43,ceh-8,dsc-1,lin-11,mec-3,mls-2,tab-1,ttx-3,unc-4,unc-42,vab-15_rc)
; positions_6nt_m1 versus M00501_2.00_rc (alr-1,ceh-1,ceh-10,ceh-12,ceh-13,ceh-14,ceh-16,ceh-17,ceh-2,ceh-30,ceh-31,ceh-43,ceh-8,dsc-1,lin-11,mec-3,mls-2,tab-1,ttx-3,unc-4,unc-42,vab-15_rc); m=79/96; ncol2=7; w=0; offset=4; strand=R; shift=9; score=0.459748; ---------yaATtar ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 18.3763 55.8873 80.8989 6.38828 17.5519 63.7934 27.065 c 0 0 0 0 0 0 0 0 0 41.7233 14.9295 6.64058 5.83845 14.9568 6.72377 22.1589 g 0 0 0 0 0 0 0 0 0 8.68034 13.6445 1.06524 0.0255905 5.61344 14.8151 28.1695 t 0 0 0 0 0 0 0 0 0 31.2201 15.5387 11.3953 87.7477 61.8779 14.6677 22.6066

M10565_2.00_shift2 (fkh-2,unc-130)
; positions_6nt_m1 versus M10565_2.00 (fkh-2,unc-130); m=80/96; ncol2=12; w=-3; offset=-3; strand=D; shift=2; score=0.453224; --rAayAAAyAwwy-- ; cor=; Ncor= a 0 0 65.625 78.125 65.625 21.875 68.75 96.875 100 3.125 90.625 50 28.125 18.75 0 0 c 0 0 0 12.5 3.125 43.75 15.625 0 0 65.625 0 0 0 43.75 0 0 g 0 0 31.25 6.25 15.625 0 0 0 0 0 6.25 3.125 6.25 9.375 0 0 t 0 0 3.125 3.125 15.625 34.375 15.625 3.125 0 31.25 3.125 46.875 65.625 28.125 0 0

M01690_2.00_shift7 (hmg-12)
; positions_6nt_m1 versus M01690_2.00 (hmg-12); m=81/96; ncol2=12; w=0; offset=2; strand=D; shift=7; score=0.453139; -------atAawTAww ; cor=; Ncor= a 0 0 0 0 0 0 0 32.1078 22.6307 76.1759 63.2674 66.917 19.5762 80.4397 51.7902 32.1162 c 0 0 0 0 0 0 0 22.6307 22.6307 4.64648 11.6336 0.0175574 0.0175574 0.0175574 0.0175574 2.38682 g 0 0 0 0 0 0 0 22.6307 22.6307 14.5311 2.31743 0.0175574 0.0175574 0.0175574 0.0175574 2.38682 t 0 0 0 0 0 0 0 22.6307 32.1078 4.64648 22.7815 33.0479 80.3887 19.5252 48.1747 63.1102

M06326_2.00_rc_shift10 (alr-1,ceh-1,ceh-10,ceh-12,ceh-13,ceh-14,ceh-16,ceh-17,ceh-2,ceh-43,ceh-8,dsc-1,lim-6,lin-11,mec-3,tab-1,ttx-3,unc-4,unc-42,vab-15_rc)
; positions_6nt_m1 versus M06326_2.00_rc (alr-1,ceh-1,ceh-10,ceh-12,ceh-13,ceh-14,ceh-16,ceh-17,ceh-2,ceh-43,ceh-8,dsc-1,lim-6,lin-11,mec-3,tab-1,ttx-3,unc-4,unc-42,vab-15_rc); m=82/96; ncol2=6; w=0; offset=5; strand=R; shift=10; score=0.453096; ----------AATTAr ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 85.6579 100 0 1.97368 97.7632 48.0263 c 0 0 0 0 0 0 0 0 0 0 6.84211 0 0 0 0 8.81579 g 0 0 0 0 0 0 0 0 0 0 2.63158 0 0 0 0 29.8684 t 0 0 0 0 0 0 0 0 0 0 4.86842 0 100 98.0263 2.23684 13.2895

M00201_2.00_rc_shift3 (sox-2,sox-3,sox-4_rc)
; positions_6nt_m1 versus M00201_2.00_rc (sox-2,sox-3,sox-4_rc); m=83/96; ncol2=10; w=-2; offset=-2; strand=R; shift=3; score=0.452847; ---rcrrrAyAAT--- ; cor=; Ncor= a 0 0 0 30.0752 24.1071 36.3974 26.6335 49.2606 86.4737 0.974525 99.9602 92.6882 15.9696 0 0 0 c 0 0 0 19.5642 28.5743 16.1917 19.9289 14.2552 2.8572 64.9875 0.00794488 0.94105 1.49285 0 0 0 g 0 0 0 30.9911 24.8413 27.2348 28.8517 26.2358 2.33927 7.87895 0.0156822 6.355 1.8417 0 0 0 t 0 0 0 19.3695 22.4773 20.1761 24.5858 10.2484 8.32981 26.159 0.0161598 0.0157525 80.6958 0 0 0

M06538_2.00_rc_shift9 (alr-1,ceh-10,ceh-14,ceh-16,ceh-17,ceh-8,lim-6,ttx-3,unc-4,unc-42_rc)
; positions_6nt_m1 versus M06538_2.00_rc (alr-1,ceh-10,ceh-14,ceh-16,ceh-17,ceh-8,lim-6,ttx-3,unc-4,unc-42_rc); m=84/96; ncol2=7; w=0; offset=4; strand=R; shift=9; score=0.452387; ---------yAATwAw ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 80 100 0 56.6667 73.3333 43.3333 c 0 0 0 0 0 0 0 0 0 50 20 0 0 0 0 10 g 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3.33333 6.66667 t 0 0 0 0 0 0 0 0 0 50 0 0 100 43.3333 23.3333 40

M00211_2.00_rc_shift3 (sox-2,sox-3,sox-4_rc)
; positions_6nt_m1 versus M00211_2.00_rc (sox-2,sox-3,sox-4_rc); m=85/96; ncol2=10; w=-2; offset=-2; strand=R; shift=3; score=0.446016; ---rsrraAyAAT--- ; cor=; Ncor= a 0 0 0 29.7775 23.1871 33.7404 30.1079 39.0979 82.3362 2.33888 99.5288 90.7943 12.5868 0 0 0 c 0 0 0 19.3706 28.039 19.4665 16.3592 19.2223 1.95582 59.1261 0.106506 2.2901 2.9525 0 0 0 g 0 0 0 30.0768 25.1183 27.9019 32.9433 21.6731 1.68339 11.701 0.350094 6.87985 3.60619 0 0 0 t 0 0 0 20.7751 23.6555 18.8912 20.5896 20.0067 14.0246 26.8341 0.0145589 0.0357429 80.8545 0 0 0

M06375_2.00_rc_shift10 (mab-5,nob-1_rc)
; positions_6nt_m1 versus M06375_2.00_rc (mab-5,nob-1_rc); m=86/96; ncol2=6; w=0; offset=5; strand=R; shift=10; score=0.436066; ----------WMTTAw ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 75 75 0 0 100 33.3333 c 0 0 0 0 0 0 0 0 0 0 0 25 0 8.33333 0 0 g 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 t 0 0 0 0 0 0 0 0 0 0 25 0 100 91.6667 0 66.6667

M06202_2.00_shift0 (fkh-7)
; positions_6nt_m1 versus M06202_2.00 (fkh-7); m=87/96; ncol2=14; w=-5; offset=-5; strand=D; shift=0; score=0.426839; aarrbyAAAAAAAt-- ; cor=; Ncor= a 59.0909 54.5455 36.3636 45.4545 9.09091 4.54545 90.9091 100 100 100 100 100 100 18.1818 0 0 c 18.1818 13.6364 13.6364 22.7273 36.3636 40.9091 0 0 0 0 0 0 0 4.54545 0 0 g 22.7273 18.1818 36.3636 27.2727 27.2727 18.1818 9.09091 0 0 0 0 0 0 18.1818 0 0 t 0 13.6364 13.6364 4.54545 27.2727 36.3636 0 0 0 0 0 0 0 59.0909 0 0

M06432_2.00_shift7 (fax-1)
; positions_6nt_m1 versus M06432_2.00 (fax-1); m=88/96; ncol2=13; w=0; offset=2; strand=D; shift=7; score=0.421987; -------AaraATCAr ; cor=; Ncor= a 0 0 0 0 0 0 0 78.5714 64.2857 57.1429 57.1429 78.5714 14.2857 0 92.8571 64.2857 c 0 0 0 0 0 0 0 21.4286 21.4286 0 7.14286 0 7.14286 85.7143 0 0 g 0 0 0 0 0 0 0 0 7.14286 28.5714 14.2857 14.2857 0 0 7.14286 35.7143 t 0 0 0 0 0 0 0 0 7.14286 14.2857 21.4286 7.14286 78.5714 14.2857 0 0

M06197_2.00_shift4 (fkh-2,fkh-6)
; positions_6nt_m1 versus M06197_2.00 (fkh-2,fkh-6); m=89/96; ncol2=8; w=-1; offset=-1; strand=D; shift=4; score=0.421965; ----tvtAAACA---- ; cor=; Ncor= a 0 0 0 0 15 35 20 100 95 100 0 100 0 0 0 0 c 0 0 0 0 0 25 15 0 5 0 85 0 0 0 0 0 g 0 0 0 0 20 30 0 0 0 0 0 0 0 0 0 0 t 0 0 0 0 65 10 65 0 0 0 15 0 0 0 0 0

M06352_2.00_rc_shift9 (alr-1,ceh-10,ceh-14,ceh-16,ceh-17,ceh-8,lim-6,ttx-3,unc-4,unc-42_rc)
; positions_6nt_m1 versus M06352_2.00_rc (alr-1,ceh-10,ceh-14,ceh-16,ceh-17,ceh-8,lim-6,ttx-3,unc-4,unc-42_rc); m=90/96; ncol2=8; w=0; offset=4; strand=R; shift=9; score=0.414688; ---------yAATwAw ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 80 100 0 56.6667 73.3333 43.3333 c 0 0 0 0 0 0 0 0 0 50 20 0 0 0 0 10 g 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3.33333 6.66667 t 0 0 0 0 0 0 0 0 0 50 0 0 100 43.3333 23.3333 40

M01665_2.00_shift9 (M01665_2.00)
; positions_6nt_m1 versus M01665_2.00; m=91/96; ncol2=8; w=0; offset=4; strand=D; shift=9; score=0.411274; ---------wrATtaa ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 27.7507 34.5645 78.7788 17.3718 12.5278 54.3908 48.8924 c 0 0 0 0 0 0 0 0 0 23.8853 19.942 0.282704 1.49907 20.8624 15.1227 18.7205 g 0 0 0 0 0 0 0 0 0 17.6947 25.3512 11.0967 6.32712 10.4641 12.3814 17.8075 t 0 0 0 0 0 0 0 0 0 30.6693 20.1424 9.84185 74.8021 56.1457 18.1051 14.5796

M01667_2.00_shift9 (cfi-1)
; positions_6nt_m1 versus M01667_2.00 (cfi-1); m=92/96; ncol2=8; w=0; offset=4; strand=D; shift=9; score=0.411021; ---------yrATyaa ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 24.5252 30.832 94.1882 5.17629 19.1668 56.2171 50.2612 c 0 0 0 0 0 0 0 0 0 27.1045 19.6593 0.0248548 3.50464 30.9749 10.0666 15.9145 g 0 0 0 0 0 0 0 0 0 21.5355 25.4968 0.0593262 0.0248248 8.87446 16.2683 17.5883 t 0 0 0 0 0 0 0 0 0 26.8348 24.012 5.72759 91.2942 40.9838 17.4479 16.236

M01664_2.00_shift9 (M01664_2.00)
; positions_6nt_m1 versus M01664_2.00; m=93/96; ncol2=8; w=0; offset=4; strand=D; shift=9; score=0.409032; ---------ywATyaa ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 22.7052 36.4833 95.4295 0.322618 18.0785 60.1595 50.0975 c 0 0 0 0 0 0 0 0 0 26.9126 11.2105 0.0149714 2.20056 42.2972 7.14919 14.6431 g 0 0 0 0 0 0 0 0 0 20.3401 24.4555 0.0360946 0.0879235 6.0178 18.8592 17.0129 t 0 0 0 0 0 0 0 0 0 30.042 27.8506 4.51944 97.3889 33.6065 13.8322 18.2465

M01678_2.00_shift4 (M01678_2.00)
; positions_6nt_m1 versus M01678_2.00; m=94/96; ncol2=8; w=-1; offset=-1; strand=D; shift=4; score=0.408589; ----aaarwAww---- ; cor=; Ncor= a 0 0 0 0 42.1032 36.1549 39.9952 40.7012 28.7986 78.0909 56.2556 41.7051 0 0 0 0 c 0 0 0 0 21.3302 21.0692 12.9198 8.13567 14.301 0.0177366 0.0620326 9.30567 0 0 0 0 g 0 0 0 0 21.9798 21.281 23.3071 26.4765 13.0701 13.9834 17.6353 11.2529 0 0 0 0 t 0 0 0 0 14.5869 21.4949 23.7779 24.6866 43.8304 7.90798 26.0471 37.7363 0 0 0 0

M02530_2.00_shift4 (lin-54)
; positions_6nt_m1 versus M02530_2.00 (lin-54); m=95/96; ncol2=8; w=-1; offset=-1; strand=D; shift=4; score=0.408395; ----ttyrAAww---- ; cor=; Ncor= a 0 0 0 0 20.9734 17.0043 11.8837 65.3952 80.915 70.7012 26.6361 25.5167 0 0 0 0 c 0 0 0 0 22.2703 21.834 41.895 2.946 3.1062 5.52047 23.1563 24.0308 0 0 0 0 g 0 0 0 0 21.8294 20.9778 13.2655 27.9509 6.07025 8.92148 8.43396 21.1013 0 0 0 0 t 0 0 0 0 34.9269 40.1839 32.9558 3.70784 9.90856 14.8569 41.7737 29.3512 0 0 0 0

M03538_2.00_shift6 (sox-2,sox-3,sox-4)
; positions_6nt_m1 versus M03538_2.00 (sox-2,sox-3,sox-4); m=96/96; ncol2=17; w=0; offset=1; strand=D; shift=6; score=0.401797; ------aAACAATray ; cor=; Ncor= a 0 0 0 0 0 0 63.0589 97.9202 98.6664 0.0202901 99.8883 99.9695 0 33.3542 47.2358 10.5608 c 0 0 0 0 0 0 12.7846 0.248781 0.0601624 99.8275 0.0203025 0.0101595 0.0304785 0.0986016 15.1524 45.5149 g 0 0 0 0 0 0 15.9045 1.19415 1.10298 0 0.0101513 0.020319 0 54.8404 16.8598 0.00908843 t 0 0 0 0 0 0 8.25203 0.636879 0.17046 0.152176 0.08121 0 99.9695 11.7067 20.752 43.9153