RSAT - peak-motifs result

Analysis: ok1127-C (21/04/2026 03:21)

peak-motifs  -v 1 -title ok1127-C -i $RSAT/public_html/tmp/www-data/2026/04/21/peak-motifs.2026-04-21.031029_2026-04-21.031029_334Gq5/peak-motifspeak_seq -max_seq_len 1000 -markov auto -disco oligos,positions -nmotifs 5 -minol 6 -maxol 7 -no_merge_lengths -2str -origin center -motif_db JASPAR2024_CORE_nematodes_non-redundant tf $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_nematodes_non-redundant_pfms_transfac.txt -motif_db cisBP_Caenorhabditis_elegans tf $RSAT/public_html/motif_databases/cisBP2/cisBP_Caenorhabditis_elegans_2019.tf -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,motifs_vs_db,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2026/04/21/peak-motifs.2026-04-21.031029_2026-04-21.031029_334Gq5

motif discovery
oligos_6nt_mkv4	oligos_6nt_mkv4_m1 assembly: tctgaaaagt (sig=123.70; e-value=2e-124) RC: acttttcaga oligos_6nt_mkv4_m2 assembly: tttacagtaa (sig=45.27; e-value=5.4e-46) RC: ttactgtaaa oligos_6nt_mkv4_m3 assembly: acttacc (sig=24.30; e-value=5e-25) RC: ggtaagt oligos_6nt_mkv4_m4 assembly: gcctgcct (sig=23.17; e-value=6.8e-24) RC: aggcaggc oligos_6nt_mkv4_m5 assembly: taccgta (sig=22.81; e-value=1.5e-23) RC: tacggta	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
positions_6nt	positions_6nt_m1 assembly: cagaaataatttattttcca (sig=300; e-value=1e-300) RC: tggaaaataaattatttctg positions_6nt_m2 assembly: aaaatcaaattcaaaacatt (sig=300; e-value=1e-300) RC: aatgttttgaatttgatttt positions_6nt_m3 assembly: ccattttaa (sig=300; e-value=1e-300) RC: ttaaaatgg positions_6nt_m4 assembly: caacaaaattattttccaaa (sig=300; e-value=1e-300) RC: tttggaaaataattttgttg positions_6nt_m5 assembly: gaaagagaaaacatttcaaa (sig=300; e-value=1e-300) RC: tttgaaatgttttctctttc	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
oligos_7nt_mkv5	oligos_7nt_mkv5_m1 assembly: ctacagtaac (sig=59.52; e-value=3e-60) RC: gttactgtag oligos_7nt_mkv5_m2 assembly: gtaggca (sig=26.38; e-value=4.2e-27) RC: tgcctac oligos_7nt_mkv5_m3 assembly: ctaggcc (sig=21.60; e-value=2.5e-22) RC: ggcctag oligos_7nt_mkv5_m4 assembly: aggcaggc (sig=20.94; e-value=1.1e-21) RC: gcctgcct oligos_7nt_mkv5_m5 assembly: taccgta (sig=19.22; e-value=6e-20) RC: tacggta	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
positions_7nt	positions_7nt_m1 assembly: gagaaaaaaatttttttctc (sig=300; e-value=1e-300) RC: gagaaaaaaatttttttctc positions_7nt_m2 assembly: acaaaaaaatttttttctct (sig=300; e-value=1e-300) RC: agagaaaaaaatttttttgt positions_7nt_m3 assembly: gagaaaaaaattttcaaaaa (sig=300; e-value=1e-300) RC: tttttgaaaatttttttctc positions_7nt_m4 assembly: ttgaaaaaaatttttttctc (sig=300; e-value=1e-300) RC: gagaaaaaaatttttttcaa positions_7nt_m5 assembly: agagaaaaaaagaaaatttt (sig=300; e-value=1e-300) RC: aaaattttctttttttctct	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]

Motif discovery
Motif 1   oligos_6nt_mkv4_m1	k-mer sig=123.70; evalue=2e-124 wwtCTGAAAaktww WWAMTTTTCAGAWW	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_nematodes_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor wwtCTGAAAaktww ztf-6 MA2187.1 D 9 0.6429 0.952 0.612 NA NA fkh-3 MA2167.1 D 8 0.5714 0.982 0.561 NA NA dmd-10 MA2130.1 R 8 0.5714 0.737 0.421 NA NA Total matches= 4 (1 more)		[ match table: html text ] [ alignments (logos): html text ]
cisBP_Caenorhabditis_elegans name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor wwtCTGAAAaktww ztf-6 M00631_2.00 D 10 0.7143 0.908 0.649 NA NA ztf-2 M01866_2.00 D 10 0.7143 0.734 0.524 NA NA M01687_2.00 M01687_2.00 D 8 0.5714 0.758 0.433 NA NA Total matches= 17 (14 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 2793 (11.59%) Max nb of predicted sites per peak: 24  (chrV:14592026-14593181) Mean nb of predicted sites per peak: 1.94	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 2   oligos_6nt_mkv4_m2	k-mer sig=45.27; evalue=5.4e-46 rdttTACAGTAayy RRTTACTGTAAAHY	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_nematodes_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor rdttTACAGTAayy lsl-1 MA2171.1 D 11 0.7857 0.878 0.690 NA NA lsy-2 MA2181.1 D 8 0.5714 0.931 0.532 NA NA lin-31 MA2140.1 R 8 0.5714 0.741 0.423 NA NA Total matches= 4 (1 more)		[ match table: html text ] [ alignments (logos): html text ]
cisBP_Caenorhabditis_elegans name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor rdttTACAGTAayy lsy-2 M00615_2.00 D 10 0.7143 0.907 0.648 NA NA lsl-1 M00626_2.00 R 10 0.7143 0.892 0.637 NA NA dmd-5 M00659_2.00 R 10 0.7143 0.749 0.535 NA NA Total matches= 9 (6 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 1489 (6.18%) Max nb of predicted sites per peak: 76  (chrV:3731002-3731510) Mean nb of predicted sites per peak: 3.02	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 3   oligos_6nt_mkv4_m3	k-mer sig=24.30; evalue=5e-25 mmACTTACCds SHGGTAAGTKK	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_nematodes_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor mmACTTACCds Total matches= 0		No match
cisBP_Caenorhabditis_elegans name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor mmACTTACCds ceh-1,ceh-2,ceh-30,ceh-31,ceh-63,ceh-9,mls-2 M10672_2.00 R 10 0.9091 0.844 0.767 NA NA ceh-1,ceh-12,ceh-16,ceh-2,ceh-63,ceh-9,mls-2,tab-1,vab-15 M05393_2.00 R 9 0.8182 0.731 0.598 NA NA ceh-2,ceh-30,ceh-31,ceh-63,ceh-9,mls-2,tab-1,vab-15 M05373_2.00 R 9 0.8182 0.717 0.587 NA NA Total matches= 23 (20 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 667 (2.77%) Max nb of predicted sites per peak: 40  (chrIV:13216656-13217255) Mean nb of predicted sites per peak: 2.00	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 4   oligos_6nt_mkv4_m4	k-mer sig=23.17; evalue=6.8e-24 cyGCCTGCCtvc GBAGGCAGGCRG	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_nematodes_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor cyGCCTGCCtvc Total matches= 0		No match
cisBP_Caenorhabditis_elegans name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor cyGCCTGCCtvc Total matches= 0		No match
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 1219 (5.06%) Max nb of predicted sites per peak: 72  (chrIV:13216656-13217255) Mean nb of predicted sites per peak: 3.38	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 5   oligos_6nt_mkv4_m5	k-mer sig=22.81; evalue=1.5e-23 rcTACCGTAry RYTACGGTAGY	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_nematodes_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor rcTACCGTAry lsl-1 MA2171.1 D 10 0.8333 0.945 0.788 NA NA lsy-2 MA2181.1 D 8 0.7273 0.875 0.637 NA NA odd-2 MA2148.1 D 8 0.7273 0.772 0.562 NA NA Total matches= 3		[ match table: html text ] [ alignments (logos): html text ]
cisBP_Caenorhabditis_elegans name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor rcTACCGTAry lsy-2 M00615_2.00 D 10 0.9091 0.974 0.885 NA NA lsl-1 M00626_2.00 R 9 0.7500 0.967 0.725 NA NA syd-9 M00646_2.00 D 8 0.7273 0.867 0.631 NA NA Total matches= 8 (5 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 1624 (6.74%) Max nb of predicted sites per peak: 140  (chrI:916630-917543) Mean nb of predicted sites per peak: 4.10	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 6   positions_6nt_m1	k-mer sig=300; evalue=1e-300 wkCagAAAtaatttatTTTCCAga TCTGGAAAATAAATTATTTCTGMW	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_nematodes_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor wkCagAAAtaatttatTTTCCAga Total matches= 0		No match
cisBP_Caenorhabditis_elegans name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor wkCagAAAtaatttatTTTCCAga hmg-12 M01690_2.00 D 12 0.5000 0.805 0.403 NA NA Total matches= 1		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 994 (4.13%) Max nb of predicted sites per peak: 20  (chrV:265120-266192) Mean nb of predicted sites per peak: 1.88	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 7   positions_6nt_m2	k-mer sig=300; evalue=1e-300 waAAaatCAAAtTcaAAACaTtya TRAATGTTTTGAATTTGATTTTTW	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_nematodes_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor waAAaatCAAAtTcaAAACaTtya lin-54 MA1450.2 D 13 0.5417 0.790 0.428 NA NA Total matches= 1		[ match table: html text ] [ alignments (logos): html text ]
cisBP_Caenorhabditis_elegans name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor waAAaatCAAAtTcaAAACaTtya lin-54 M07296_2.00 D 15 0.6250 0.781 0.488 NA NA lin-54 M07299_2.00 D 15 0.6250 0.736 0.460 NA NA lin-54 M07300_2.00 D 15 0.6250 0.734 0.459 NA NA Total matches= 5 (2 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 994 (4.13%) Max nb of predicted sites per peak: 42  (chrM:3186-8180) Mean nb of predicted sites per peak: 1.94	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 8   positions_6nt_m3	k-mer sig=300; evalue=1e-300 twCCATTTTaAwa TWTTAAAATGGWA	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_nematodes_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor twCCATTTTaAwa fkh-3 MA2167.1 R 8 0.6154 0.715 0.440 NA NA mef-2 MA2173.1 R 7 0.5385 0.815 0.439 NA NA ztf-6 MA2187.1 R 8 0.5714 0.745 0.426 NA NA Total matches= 3		[ match table: html text ] [ alignments (logos): html text ]
cisBP_Caenorhabditis_elegans name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor twCCATTTTaAwa lin-54 M02532_2.00 R 13 1.0000 0.704 0.704 NA NA sox-2,sox-3,sox-4 M09396_2.00 D 11 0.8462 0.706 0.597 NA NA lin-54 M02523_2.00 R 10 0.7692 0.742 0.571 NA NA Total matches= 43 (40 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 937 (3.89%) Max nb of predicted sites per peak: 28  (chrM:3186-8180) Mean nb of predicted sites per peak: 1.79	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 9   positions_6nt_m4	k-mer sig=300; evalue=1e-300 thcAaCAAAAttaTTTTCCAAaww WWTTTGGAAAATAATTTTGTTGDA	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_nematodes_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor thcAaCAAAAttaTTTTCCAAaww Total matches= 0		No match
cisBP_Caenorhabditis_elegans name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor thcAaCAAAAttaTTTTCCAAaww Total matches= 0		No match
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 961 (3.99%) Max nb of predicted sites per peak: 28  (chrV:265120-266192) Mean nb of predicted sites per peak: 1.89	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 10   positions_6nt_m5	k-mer sig=300; evalue=1e-300 vrGAaAGaGAAaACATTTCaAAay RTTTTGAAATGTTTTCTCTTTCYB	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_nematodes_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor vrGAaAGaGAAaACATTTCaAAay Total matches= 0		No match
cisBP_Caenorhabditis_elegans name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor vrGAaAGaGAAaACATTTCaAAay M10540_2.00 M10540_2.00 D 15 0.6250 0.714 0.446 NA NA Total matches= 1		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 821 (3.41%) Max nb of predicted sites per peak: 14  (chrM:3186-8180) Mean nb of predicted sites per peak: 1.75	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 11   oligos_7nt_mkv5_m1	k-mer sig=59.52; evalue=3e-60 raCTACaGTAacyc GRGTTACTGTAGTY	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_nematodes_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor raCTACaGTAacyc lsl-1 MA2171.1 D 11 0.7857 0.945 0.743 NA NA lsy-2 MA2181.1 D 8 0.5714 0.997 0.570 NA NA odd-2 MA2148.1 R 8 0.5714 0.771 0.440 NA NA Total matches= 4 (1 more)		[ match table: html text ] [ alignments (logos): html text ]
cisBP_Caenorhabditis_elegans name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor raCTACaGTAacyc lsl-1 M00626_2.00 R 10 0.7143 0.938 0.670 NA NA lsy-2 M00615_2.00 D 10 0.7143 0.911 0.651 NA NA dmd-5 M00659_2.00 D 10 0.7143 0.740 0.529 NA NA Total matches= 7 (4 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 1716 (7.12%) Max nb of predicted sites per peak: 88  (chrI:916630-917543) Mean nb of predicted sites per peak: 2.55	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 12   oligos_7nt_mkv5_m2	k-mer sig=26.38; evalue=4.2e-27 agGTAGGCAgg CCTGCCTACCT	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_nematodes_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor agGTAGGCAgg Total matches= 0		No match
cisBP_Caenorhabditis_elegans name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor agGTAGGCAgg nhr-256,nhr-79 M02420_2.00 D 8 0.7273 0.716 0.521 NA NA Total matches= 1		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 1031 (4.28%) Max nb of predicted sites per peak: 68  (chrIV:13216656-13217255) Mean nb of predicted sites per peak: 3.43	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 13   oligos_7nt_mkv5_m3	k-mer sig=21.60; evalue=2.5e-22 ryCTAGGCCwm KWGGCCTAGRY	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_nematodes_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor ryCTAGGCCwm Total matches= 0		No match
cisBP_Caenorhabditis_elegans name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor ryCTAGGCCwm M09322_2.00 M09322_2.00 D 10 0.8333 0.711 0.592 NA NA mbr-1 M00707_2.00 R 8 0.6154 0.702 0.432 NA NA nhr-23,nhr-41,nhr-85,unc-55 M11183_2.00 D 11 0.5500 0.756 0.416 NA NA Total matches= 4 (1 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 668 (2.77%) Max nb of predicted sites per peak: 75  (chrII:691727-692740) Mean nb of predicted sites per peak: 3.32	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 14   oligos_7nt_mkv5_m4	k-mer sig=20.94; evalue=1.1e-21 gyAGGCAGGCrk MYGCCTGCCTRC	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_nematodes_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor gyAGGCAGGCrk Total matches= 0		No match
cisBP_Caenorhabditis_elegans name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor gyAGGCAGGCrk M09624_2.00 M09624_2.00 D 12 0.8000 0.706 0.565 NA NA Total matches= 1		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 1251 (5.19%) Max nb of predicted sites per peak: 78  (chrI:14368121-14368925) Mean nb of predicted sites per peak: 3.69	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 15   oligos_7nt_mkv5_m5	k-mer sig=19.22; evalue=6e-20 rcTACCGTAry RYTACGGTAGY	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_nematodes_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor rcTACCGTAry lsl-1 MA2171.1 D 10 0.8333 0.945 0.788 NA NA lsy-2 MA2181.1 D 8 0.7273 0.875 0.637 NA NA odd-2 MA2148.1 D 8 0.7273 0.772 0.562 NA NA Total matches= 3		[ match table: html text ] [ alignments (logos): html text ]
cisBP_Caenorhabditis_elegans name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor rcTACCGTAry lsy-2 M00615_2.00 D 10 0.9091 0.974 0.885 NA NA lsl-1 M00626_2.00 R 9 0.7500 0.967 0.725 NA NA syd-9 M00646_2.00 D 8 0.7273 0.867 0.631 NA NA Total matches= 8 (5 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 1624 (6.74%) Max nb of predicted sites per peak: 140  (chrI:916630-917543) Mean nb of predicted sites per peak: 4.10	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 16   positions_7nt_m1	k-mer sig=300; evalue=1e-300 wwgarAAAAAaATtTTTTTytcaw WTGARAAAAAAATTTTTTTYTCWW	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_nematodes_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor wwgarAAAAAaATtTTTTTytcaw Total matches= 0		No match
cisBP_Caenorhabditis_elegans name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor wwgarAAAAAaATtTTTTTytcaw fkh-7 M06203_2.00 R 15 0.6250 0.764 0.477 NA NA fkh-7 M06202_2.00 R 13 0.5200 0.885 0.460 NA NA Total matches= 2		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 612 (2.54%) Max nb of predicted sites per peak: 64  (chrI:11013903-11014067) Mean nb of predicted sites per peak: 4.92	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 17   positions_7nt_m2	k-mer sig=300; evalue=1e-300 hwamAAAAAAaTtTTTTTytctww WWAGARAAAAAAATTTTTTTKTWD	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_nematodes_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor hwamAAAAAAaTtTTTTTytctww Total matches= 0		No match
cisBP_Caenorhabditis_elegans name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor hwamAAAAAAaTtTTTTTytctww fkh-7 M06202_2.00 R 14 0.5833 0.872 0.509 NA NA fkh-7 M06203_2.00 R 15 0.6250 0.794 0.496 NA NA Total matches= 2		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 852 (3.54%) Max nb of predicted sites per peak: 70  (chrM:3186-8180) Mean nb of predicted sites per peak: 3.80	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 18   positions_7nt_m3	k-mer sig=300; evalue=1e-300 wwgagAAAAAAAttttcaaaaaww WWTTTTTGAAAATTTTTTTCTCWW	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_nematodes_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor wwgagAAAAAAAttttcaaaaaww Total matches= 0		No match
cisBP_Caenorhabditis_elegans name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor wwgagAAAAAAAttttcaaaaaww fkh-7 M06203_2.00 D 15 0.6250 0.819 0.512 NA NA fkh-7 M06202_2.00 D 13 0.5200 0.890 0.463 NA NA Total matches= 2		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 1647 (6.84%) Max nb of predicted sites per peak: 56  (chrM:3186-8180) Mean nb of predicted sites per peak: 2.41	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 19   positions_7nt_m4	k-mer sig=300; evalue=1e-300 wtttgAAAAAAaTtTTTTTytcww WWGARAAAAAAATTTTTTTCAAAW	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_nematodes_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor wtttgAAAAAAaTtTTTTTytcww Total matches= 0		No match
cisBP_Caenorhabditis_elegans name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor wtttgAAAAAAaTtTTTTTytcww fkh-7 M06203_2.00 R 15 0.6250 0.758 0.474 NA NA fkh-7 M06202_2.00 R 13 0.5200 0.883 0.459 NA NA Total matches= 2		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 1035 (4.30%) Max nb of predicted sites per peak: 70  (chrM:3186-8180) Mean nb of predicted sites per peak: 3.35	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 20   positions_7nt_m5	k-mer sig=300; evalue=1e-300 waagagAAAAAAAgaaaattttww WWAAAATTTTCTTTTTTTCTCTTW	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_nematodes_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor waagagAAAAAAAgaaaattttww Total matches= 0		No match
cisBP_Caenorhabditis_elegans name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor waagagAAAAAAAgaaaattttww fkh-7 M06203_2.00 D 15 0.6250 0.871 0.544 NA NA fkh-7 M06202_2.00 D 14 0.5833 0.848 0.495 NA NA Total matches= 2		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 1470 (6.10%) Max nb of predicted sites per peak: 126  (chrM:3186-8180) Mean nb of predicted sites per peak: 2.64	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]

Command:  peak-motifs  -v 1 -title ok1127-C -i $RSAT/public_html/tmp/www-data/2026/04/21/peak-motifs.2026-04-21.031029_2026-04-21.031029_334Gq5/peak-motifspeak_seq -max_seq_len 1000 -markov auto -disco oligos,positions -nmotifs 5 -minol 6 -maxol 7 -no_merge_lengths -2str -origin center -motif_db JASPAR2024_CORE_nematodes_non-redundant tf $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_nematodes_non-redundant_pfms_transfac.txt -motif_db cisBP_Caenorhabditis_elegans tf $RSAT/public_html/motif_databases/cisBP2/cisBP_Caenorhabditis_elegans_2019.tf -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,motifs_vs_db,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2026/04/21/peak-motifs.2026-04-21.031029_2026-04-21.031029_334Gq5