; convert-matrix  -v 1 -i $RSAT/public_html/tmp/www-data/2026/04/21/peak-motifs.2026-04-21.083405_2026-04-21.083405_7S6poV/results/oligos_6nt_mkv1/peak-motifs_oligos-2str-noov_6nt_mkv1_pssm_count_matrices.tf -from tf -to tab -return counts -return sites -return logo -logo_format png -logo_file $RSAT/public_html/tmp/www-data/2026/04/21/peak-motifs.2026-04-21.083405_2026-04-21.083405_7S6poV/results/oligos_6nt_mkv1/peak-motifs_oligos-2str-noov_6nt_mkv1_pssm_count_matrices_logo -o $RSAT/public_html/tmp/www-data/2026/04/21/peak-motifs.2026-04-21.083405_2026-04-21.083405_7S6poV/results/oligos_6nt_mkv1/peak-motifs_oligos-2str-noov_6nt_mkv1_pssm_count_matrices_links.txt
; Input files
;	input	/var/www/html/rsat/public_html/tmp/www-data/2026/04/21/peak-motifs.2026-04-21.083405_2026-04-21.083405_7S6poV/results/oligos_6nt_mkv1/peak-motifs_oligos-2str-noov_6nt_mkv1_pssm_count_matrices.tf
; Input format        	tf
; Output files
;	output	/var/www/html/rsat/public_html/tmp/www-data/2026/04/21/peak-motifs.2026-04-21.083405_2026-04-21.083405_7S6poV/results/oligos_6nt_mkv1/peak-motifs_oligos-2str-noov_6nt_mkv1_pssm_count_matrices_links.txt
; Output format       	tab
; pseudo-weight       	1
a	0	0	0	6	6	0	0	0	6	0	0
c	3	3	0	0	0	6	6	0	0	0	3
g	0	0	6	0	0	0	0	6	0	3	3
t	3	3	0	0	0	0	0	0	0	3	0
//
; Sites	6
>site_0
TTGAACCGAGG
>site_1
TTGAACCGAGG
>site_2
TTGAACCGAGG
>site_3
CCGAACCGATC
>site_4
CCGAACCGATC
>site_5
CCGAACCGATC
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/04/21/peak-motifs.2026-04-21.083405_2026-04-21.083405_7S6poV/results/oligos_6nt_mkv1//peak-motifs_oligos-2str-noov_6nt_mkv1_pssm_count_matrices_logo_m1.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/04/21/peak-motifs.2026-04-21.083405_2026-04-21.083405_7S6poV/results/oligos_6nt_mkv1//peak-motifs_oligos-2str-noov_6nt_mkv1_pssm_count_matrices_logo_m1_rc.png
;
a	0	0	0	0	0	0	2	0	0	0
c	2	2	2	0	2	0	0	2	2	0
g	0	0	0	2	0	0	0	0	0	2
t	0	0	0	0	0	2	0	0	0	0
//
; Sites	2
>site_0
CCCGCTACCG
>site_1
CCCGCTACCG
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/04/21/peak-motifs.2026-04-21.083405_2026-04-21.083405_7S6poV/results/oligos_6nt_mkv1//peak-motifs_oligos-2str-noov_6nt_mkv1_pssm_count_matrices_logo_m2.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/04/21/peak-motifs.2026-04-21.083405_2026-04-21.083405_7S6poV/results/oligos_6nt_mkv1//peak-motifs_oligos-2str-noov_6nt_mkv1_pssm_count_matrices_logo_m2_rc.png
;
a	0	3	0	0	3	0	0	0	3	0	3	0	0	3
c	0	0	0	0	0	0	0	0	0	0	0	0	0	0
g	3	0	3	3	0	3	0	3	0	3	0	0	0	0
t	0	0	0	0	0	0	3	0	0	0	0	3	3	0
//
; Sites	3
>site_0
GAGGAGTGAGATTA
>site_1
GAGGAGTGAGATTA
>site_2
GAGGAGTGAGATTA
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/04/21/peak-motifs.2026-04-21.083405_2026-04-21.083405_7S6poV/results/oligos_6nt_mkv1//peak-motifs_oligos-2str-noov_6nt_mkv1_pssm_count_matrices_logo_m3.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/04/21/peak-motifs.2026-04-21.083405_2026-04-21.083405_7S6poV/results/oligos_6nt_mkv1//peak-motifs_oligos-2str-noov_6nt_mkv1_pssm_count_matrices_logo_m3_rc.png
;
a	2	0	4	0	0	0	0	0	0	0	0
c	2	2	0	6	0	0	0	6	0	4	2
g	2	2	0	0	0	0	0	0	2	2	0
t	0	2	2	0	6	6	6	0	4	0	4
//
; Sites	6
>site_0
GTTCTTTCTGC
>site_1
GTTCTTTCTGC
>site_2
CCACTTTCGCT
>site_3
CCACTTTCGCT
>site_4
AGACTTTCTCT
>site_5
AGACTTTCTCT
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/04/21/peak-motifs.2026-04-21.083405_2026-04-21.083405_7S6poV/results/oligos_6nt_mkv1//peak-motifs_oligos-2str-noov_6nt_mkv1_pssm_count_matrices_logo_m4.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/04/21/peak-motifs.2026-04-21.083405_2026-04-21.083405_7S6poV/results/oligos_6nt_mkv1//peak-motifs_oligos-2str-noov_6nt_mkv1_pssm_count_matrices_logo_m4_rc.png
;
; Host name	rsat
; Job started	2026-04-21.083413
; Job done	2026-04-21.083414
; Seconds	0.16
;	user	0.16
;	system	0.04
;	cuser	0.91
;	csystem	0.19
