; convert-matrix  -v 1 -i $RSAT/public_html/tmp/www-data/2026/04/21/peak-motifs.2026-04-21.083405_2026-04-21.083405_7S6poV/results/oligos_7nt_mkv1/peak-motifs_oligos-2str-noov_7nt_mkv1_pssm_count_matrices.tf -from transfac -to tab -return counts -return sites -o $RSAT/public_html/tmp/www-data/2026/04/21/peak-motifs.2026-04-21.083405_2026-04-21.083405_7S6poV/results/oligos_7nt_mkv1/peak-motifs_oligos-2str-noov_7nt_mkv1_pssm_count_matrices.txt
; Input files
;	input	/var/www/html/rsat/public_html/tmp/www-data/2026/04/21/peak-motifs.2026-04-21.083405_2026-04-21.083405_7S6poV/results/oligos_7nt_mkv1/peak-motifs_oligos-2str-noov_7nt_mkv1_pssm_count_matrices.tf
; Input format        	transfac
; Output files
;	output	/var/www/html/rsat/public_html/tmp/www-data/2026/04/21/peak-motifs.2026-04-21.083405_2026-04-21.083405_7S6poV/results/oligos_7nt_mkv1/peak-motifs_oligos-2str-noov_7nt_mkv1_pssm_count_matrices.txt
; Output format       	tab
; pseudo-weight       	1
a	0	0	0	0	0	3	3	0	0	0	3	0	0	0	0	0	0	3	0	0	0	0
c	3	0	3	3	0	0	0	3	3	0	0	0	3	3	0	0	0	0	3	0	0	3
g	0	3	0	0	3	0	0	0	0	3	0	0	0	0	3	3	3	0	0	3	3	0
t	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0
//
; Sites	3
>site_0
CGCCGAACCGATCCGGGACGGC
>site_1
CGCCGAACCGATCCGGGACGGC
>site_2
CGCCGAACCGATCCGGGACGGC
a	2	0	0	4	0	4	0	4	4	2	0
c	2	2	0	0	0	0	0	0	0	0	0
g	0	2	4	0	4	0	4	0	0	2	4
t	0	0	0	0	0	0	0	0	0	0	0
//
; Sites	4
>site_0
ACGAGAGAAGG
>site_1
ACGAGAGAAGG
>site_2
CGGAGAGAAAG
>site_3
CGGAGAGAAAG
a	0	0	0	0	2	2	0	0	0	2	0	0	0
c	2	2	0	0	0	0	0	0	2	0	2	0	2
g	0	0	2	2	0	0	2	2	0	0	0	0	0
t	0	0	0	0	0	0	0	0	0	0	0	2	0
//
; Sites	2
>site_0
CCGGAAGGCACTC
>site_1
CCGGAAGGCACTC
; Host name	rsat
; Job started	2026-04-21.083421
; Job done	2026-04-21.083421
; Seconds	0.13
;	user	0.13
;	system	0.01
;	cuser	0
;	csystem	0
