; convert-matrix  -v 1 -i $RSAT/public_html/tmp/www-data/2026/04/21/peak-motifs.2026-04-21.084811_2026-04-21.084811_BWoAyt/results/oligos_6nt_mkv1/peak-motifs_oligos-2str-noov_6nt_mkv1_pssm_count_matrices.tf -from transfac -to tab -return counts -return sites -o $RSAT/public_html/tmp/www-data/2026/04/21/peak-motifs.2026-04-21.084811_2026-04-21.084811_BWoAyt/results/oligos_6nt_mkv1/peak-motifs_oligos-2str-noov_6nt_mkv1_pssm_count_matrices.txt
; Input files
;	input	/var/www/html/rsat/public_html/tmp/www-data/2026/04/21/peak-motifs.2026-04-21.084811_2026-04-21.084811_BWoAyt/results/oligos_6nt_mkv1/peak-motifs_oligos-2str-noov_6nt_mkv1_pssm_count_matrices.tf
; Input format        	transfac
; Output files
;	output	/var/www/html/rsat/public_html/tmp/www-data/2026/04/21/peak-motifs.2026-04-21.084811_2026-04-21.084811_BWoAyt/results/oligos_6nt_mkv1/peak-motifs_oligos-2str-noov_6nt_mkv1_pssm_count_matrices.txt
; Output format       	tab
; pseudo-weight       	1
a	1	0	0	3	0	0	3	0	1	1
c	0	1	3	0	0	3	0	1	0	0
g	0	1	0	0	3	0	0	2	2	0
t	2	1	0	0	0	0	0	0	0	2
//
; Sites	3
>site_0
TTCAGCACGT
>site_1
TCCAGCAGGA
>site_2
AGCAGCAGAT
a	2	2	0	7	0	7	0	0	7	4	1
c	2	4	0	0	0	0	0	0	0	2	2
g	1	0	7	0	7	0	7	7	0	1	4
t	2	1	0	0	0	0	0	0	0	0	0
//
; Sites	7
>site_0
TAGAGAGGACA
>site_1
CCGAGAGGAAC
>site_2
CTGAGAGGACG
>site_3
GAGAGAGGAAC
>site_4
TCGAGAGGAAG
>site_5
ACGAGAGGAGG
>site_6
ACGAGAGGAAG
a	1	0	4	4	0	0	4	0	2	3
c	2	1	0	0	0	0	0	0	1	0
g	1	3	0	0	4	4	0	4	0	0
t	0	0	0	0	0	0	0	0	1	1
//
; Sites	4
>site_0
AGAAGGAGAA
>site_1
GCAAGGAGCA
>site_2
CGAAGGAGTA
>site_3
CGAAGGAGAT
a	1	1	3	0	0	0	0	0	0	0
c	1	0	1	0	4	0	0	1	1	1
g	1	2	0	0	0	4	4	3	3	2
t	1	1	0	4	0	0	0	0	0	1
//
; Sites	4
>site_0
GGATCGGGGT
>site_1
CACTCGGGGG
>site_2
TTATCGGCGG
>site_3
AGATCGGGCC
a	0	0	4	0	1	0	4	0	2	1
c	1	2	0	4	0	0	0	0	0	1
g	1	2	0	0	3	0	0	4	2	1
t	2	0	0	0	0	4	0	0	0	1
//
; Sites	4
>site_0
TCACGTAGAG
>site_1
GCACATAGGA
>site_2
TGACGTAGAC
>site_3
CGACGTAGGT
; Host name	rsat
; Job started	2026-04-21.084819
; Job done	2026-04-21.084819
; Seconds	0.14
;	user	0.15
;	system	0.01
;	cuser	0
;	csystem	0
