; convert-matrix  -v 1 -i $RSAT/public_html/tmp/www-data/2026/04/21/peak-motifs.2026-04-21.084818_2026-04-21.084818_Bxxpgl/results/oligos_7nt_mkv1/peak-motifs_oligos-2str-noov_7nt_mkv1_pssm_count_matrices.tf -from transfac -to tab -return counts -return sites -o $RSAT/public_html/tmp/www-data/2026/04/21/peak-motifs.2026-04-21.084818_2026-04-21.084818_Bxxpgl/results/oligos_7nt_mkv1/peak-motifs_oligos-2str-noov_7nt_mkv1_pssm_count_matrices.txt
; Input files
;	input	/var/www/html/rsat/public_html/tmp/www-data/2026/04/21/peak-motifs.2026-04-21.084818_2026-04-21.084818_Bxxpgl/results/oligos_7nt_mkv1/peak-motifs_oligos-2str-noov_7nt_mkv1_pssm_count_matrices.tf
; Input format        	transfac
; Output files
;	output	/var/www/html/rsat/public_html/tmp/www-data/2026/04/21/peak-motifs.2026-04-21.084818_2026-04-21.084818_Bxxpgl/results/oligos_7nt_mkv1/peak-motifs_oligos-2str-noov_7nt_mkv1_pssm_count_matrices.txt
; Output format       	tab
; pseudo-weight       	1
a	2	1	1	0	4	0	4	0	0	4	4	0	2
c	1	1	3	0	0	0	0	0	0	0	0	2	2
g	0	1	0	4	0	4	0	4	4	0	0	2	0
t	1	1	0	0	0	0	0	0	0	0	0	0	0
//
; Sites	4
>site_0
CCCGAGAGGAACC
>site_1
TGAGAGAGGAACC
>site_2
ATCGAGAGGAAGA
>site_3
AACGAGAGGAAGA
a	1	0	0	3	0	2	0	0	3	1	0
c	1	1	3	0	0	1	0	3	0	1	2
g	0	1	0	0	3	0	0	0	0	1	1
t	1	1	0	0	0	0	3	0	0	0	0
//
; Sites	3
>site_0
CTCAGATCAGC
>site_1
TCCAGCTCACC
>site_2
AGCAGATCAAG
a	0	1	1	0	0	1	0	0	1	0	0	1
c	1	0	0	0	0	0	0	1	0	0	1	0
g	0	0	0	1	1	0	1	0	0	1	0	0
t	0	0	0	0	0	0	0	0	0	0	0	0
//
; Sites	1
>site_0
CAAGGAGCAGCA
a	1	0	0	0	0	0	2	0	0	0	0
c	0	1	2	2	2	0	0	0	2	1	0
g	1	1	0	0	0	2	0	0	0	0	0
t	0	0	0	0	0	0	0	2	0	1	2
//
; Sites	2
>site_0
ACCCCGATCCT
>site_1
GGCCCGATCTT
a	0	0	0	0	0	0	0	1	0	0	0
c	0	1	1	0	1	0	0	0	1	0	0
g	1	0	0	1	0	1	0	0	0	0	1
t	0	0	0	0	0	0	1	0	0	1	0
//
; Sites	1
>site_0
GCCGCGTACTG
; Host name	rsat
; Job started	2026-04-21.084829
; Job done	2026-04-21.084829
; Seconds	0.13
;	user	0.13
;	system	0.01
;	cuser	0
;	csystem	0
