peak-motifs LD

motif discovery

oligos_6nt_mkv2

oligos_6nt_mkv2_m1	assembly: caacaaat (sig=4.48; e-value=3.3e-05)	RC: atttgttg
oligos_6nt_mkv2_m2	assembly: ctcctcc (sig=1.73; e-value=0.019)	RC: ggaggag
oligos_6nt_mkv2_m3	assembly: ccgccg (sig=0.98; e-value=0.1)	RC: cggcgg
oligos_6nt_mkv2_m4	assembly: aaggtg (sig=0.82; e-value=0.15)	RC: cacctt
oligos_6nt_mkv2_m5	assembly: gatcgc (sig=0.58; e-value=0.26)	RC: gcgatc

[ discovered words: text ]
[ assembly: text sig matrices ]
[ matrices: tab format transfac format ]

positions_6nt

Not a single significant pattern

[positions_6nt]

oligos_7nt_mkv2

oligos_7nt_mkv2_m1	assembly: aaggggg (sig=1.80; e-value=0.016)	RC: ccccctt
oligos_7nt_mkv2_m2	assembly: cctcctcc (sig=1.51; e-value=0.031)	RC: ggaggagg
oligos_7nt_mkv2_m3	assembly: acaacaa (sig=1.14; e-value=0.072)	RC: ttgttgt
oligos_7nt_mkv2_m4	assembly: aaacaaaa (sig=0.67; e-value=0.21)	RC: ttttgttt
oligos_7nt_mkv2_m5	assembly: tccgccgg (sig=0.67; e-value=0.21)	RC: ccggcgga

[ discovered words: text ]
[ assembly: text sig matrices ]
[ matrices: tab format transfac format ]

positions_7nt

Not a single significant pattern

[positions_7nt]

oligos_8nt_mkv2

oligos_8nt_mkv2_m1	assembly: aacaacaa (sig=3.92; e-value=0.00012)	RC: ttgttgtt
oligos_8nt_mkv2_m2	assembly: tcctcctcc (sig=1.75; e-value=0.018)	RC: ggaggagga
oligos_8nt_mkv2_m3	assembly: gaaaggggg (sig=1.68; e-value=0.021)	RC: ccccctttc
oligos_8nt_mkv2_m4	assembly: acacacaca (sig=0.95; e-value=0.11)	RC: tgtgtgtgt
oligos_8nt_mkv2_m5	assembly: agctgcag (sig=0.62; e-value=0.24)	RC: ctgcagct

[ discovered words: text ]
[ assembly: text sig matrices ]
[ matrices: tab format transfac format ]

positions_8nt

Not a single significant pattern

[positions_8nt]

Motif discovery

Motif 1 oligos_6nt_mkv2_m1

k-mer sig=4.48; evalue=3.3e-05

rvCAACAAATws

SWATTTGTTGBY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 9 (32.14%)
Max nb of predicted sites per peak: 1
(FBgn0052699|LPCAT|chrX:9578788-9579987|strand=-)
Mean nb of predicted sites per peak: 1.00

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 2 oligos_6nt_mkv2_m2

k-mer sig=1.73; evalue=0.019

tbCTCCTCCks

SMGGAGGAGVA

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 14 (50.00%)
Max nb of predicted sites per peak: 4
(FBgn0039141|spas|chr3R:24038215-24039414|strand=+)
Mean nb of predicted sites per peak: 1.57

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 3 oligos_6nt_mkv2_m3

k-mer sig=0.98; evalue=0.1

ywCCGCCGrs

SYCGGCGGWR

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 13 (46.43%)
Max nb of predicted sites per peak: 4
(FBgn0039141|spas|chr3R:24038215-24039414|strand=+)
Mean nb of predicted sites per peak: 1.92

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 4 oligos_6nt_mkv2_m4

k-mer sig=0.82; evalue=0.15

mrAAGGTGrs

SYCACCTTYK

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 18 (64.29%)
Max nb of predicted sites per peak: 3
(FBgn0039141|spas|chr3R:24038215-24039414|strand=+)
Mean nb of predicted sites per peak: 1.56

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 5 oligos_6nt_mkv2_m5

k-mer sig=0.58; evalue=0.26

avGATCGCmk

MKGCGATCBT

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 17 (60.71%)
Max nb of predicted sites per peak: 4
(FBgn0029994|Ldsdh1|chrX:8080406-8081605|strand=-)
Mean nb of predicted sites per peak: 1.71

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 6 oligos_7nt_mkv2_m1

k-mer sig=1.80; evalue=0.016

vrAAGGGGGsk

MSCCCCCTTYB

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 12 (42.86%)
Max nb of predicted sites per peak: 3
(FBgn0029994|Ldsdh1|chrX:8080406-8081605|strand=-)
Mean nb of predicted sites per peak: 1.50

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 7 oligos_7nt_mkv2_m2

k-mer sig=1.51; evalue=0.031

mtCCTCCTCCbb

VVGGAGGAGGAK

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 16 (57.14%)
Max nb of predicted sites per peak: 5
(FBgn0039141|spas|chr3R:24038215-24039414|strand=+)
Mean nb of predicted sites per peak: 2.12

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 8 oligos_7nt_mkv2_m3

k-mer sig=1.14; evalue=0.072

saACAACAAsw

WSTTGTTGTTS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 14 (50.00%)
Max nb of predicted sites per peak: 8
(FBgn0052699|LPCAT|chrX:9578788-9579987|strand=-)
Mean nb of predicted sites per peak: 1.93

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 9 oligos_7nt_mkv2_m4

k-mer sig=0.67; evalue=0.21

rrAAACAAAAww

WWTTTTGTTTYY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 13 (46.43%)
Max nb of predicted sites per peak: 2
(FBgn0040336|Seipin|chrX:2619799-2620998|strand=+)
Mean nb of predicted sites per peak: 1.31

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 10 oligos_7nt_mkv2_m5

k-mer sig=0.67; evalue=0.21

syTCCGCCGGcs

SGCCGGCGGARS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 17 (60.71%)
Max nb of predicted sites per peak: 5
(FBgn0039141|spas|chr3R:24038215-24039414|strand=+)
Mean nb of predicted sites per peak: 1.94

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 11 oligos_8nt_mkv2_m1

k-mer sig=3.92; evalue=0.00012

rsAACAACAAya

TRTTGTTGTTSY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 11 (39.29%)
Max nb of predicted sites per peak: 11
(FBgn0052699|LPCAT|chrX:9578788-9579987|strand=-)
Mean nb of predicted sites per peak: 2.82

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 12 oligos_8nt_mkv2_m2

k-mer sig=1.75; evalue=0.018

cmtCCTCCTCCyb

VRGGAGGAGGAKG

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 16 (57.14%)
Max nb of predicted sites per peak: 6
(FBgn0039141|spas|chr3R:24038215-24039414|strand=+)
Mean nb of predicted sites per peak: 2.25

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 13 oligos_8nt_mkv2_m3

k-mer sig=1.68; evalue=0.021

rvgAAAGGGGGvb

VBCCCCCTTTCBY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 14 (50.00%)
Max nb of predicted sites per peak: 5
(FBgn0029994|Ldsdh1|chrX:8080406-8081605|strand=-)
Mean nb of predicted sites per peak: 1.71

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 14 oligos_8nt_mkv2_m4

k-mer sig=0.95; evalue=0.11

acrCACACACAya

TRTGTGTGTGYGT

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 14 (50.00%)
Max nb of predicted sites per peak: 18
(FBgn0001316|klar|chr3L:539415-540614|strand=-)
Mean nb of predicted sites per peak: 4.71

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 15 oligos_8nt_mkv2_m5

k-mer sig=0.62; evalue=0.24

scAGCTGCAGcs

SGCTGCAGCTGS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 17 (60.71%)
Max nb of predicted sites per peak: 4
(FBgn0035206|sturkopf|chr3L:1312178-1313377|strand=-)
Mean nb of predicted sites per peak: 1.76

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Word significance table
Word comparisons		[tab] [html] [heatmap]
Comparisons between discovered motifs
Discovered motifs versus discovered motifs		[ Discovered motif(s): tf ] [ table: html txt ] [ alignments (logo): html text ] [ clustering: html ] [ graph: gml (for CytoScape) ]

Log files
Parameters and files		[txt] [html]
Time log		[time table] [time log] [html]

RSAT - peak-motifs result

Analysis: LD_reg (21/04/2026 18:15)

Command

Sequence composition

Discovered motifs (by algorithm)

Discovered motifs (with motif comparison)

Motif locations (sites)

Motif comparisons

Logs and parameter files

Publications

Results