/var/www/html/rsat/public_html/tmp/www-data/2026/04/21/peak-motifs.2026-04-21.181428_2026-04-21.181428_T3sFyL/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab 
 position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2026/04/21/peak-motifs.2026-04-21.181428_2026-04-21.181428_T3sFyL/data/sequences/peak-motifs_test_maxlen1200_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 2 -ci 20 -img_format png -title LD_reg -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2026/04/21/peak-motifs.2026-04-21.181428_2026-04-21.181428_T3sFyL/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
 Citation: van Helden, et al. (2000).  Nucleic Acids Res 28, 1000-1010.
 Sequence file                	$RSAT/public_html/tmp/www-data/2026/04/21/peak-motifs.2026-04-21.181428_2026-04-21.181428_T3sFyL/data/sequences/peak-motifs_test_maxlen1200_purged_ml40_mis3.fasta
 Sequence format              	fasta
 Sequence type                	dna
 Output file                  	$RSAT/public_html/tmp/www-data/2026/04/21/peak-motifs.2026-04-21.181428_2026-04-21.181428_T3sFyL/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
 Oligo length                 	2
 Occurrences counted  on a single  strands
 Conditions of applicability checked.
 Background model estimation: homogeneous repartition
 Sequence statistics:
	Nb of sequences              	28
	Sum of sequence lengths      	33572
	Min sequence length          	0
	Max sequence length          	1199
	Average sequence length      	1199
	Possible positions           	33544
 Sequences:
	#	length	ID
	1	1199	FBgn0001174|halo|chr2L:1516949-1518148|strand=-
	2	1199	FBgn0001316|klar|chr3L:539415-540614|strand=-
	3	1199	FBgn0029994|Ldsdh1|chrX:8080406-8081605|strand=-
	4	1199	FBgn0030391|Rab40|chrX:12461913-12463112|strand=-
	5	1199	FBgn0030607|dob|chrX:15067007-15068206|strand=+
	6	1199	FBgn0030608|Lsd-2|chrX:15075021-15076220|strand=-
	7	1199	FBgn0031630|CG15629|chr2L:4813009-4814208|strand=+
	8	1199	FBgn0032264|Lip4|chr2L:10527572-10528771|strand=+
	9	1199	FBgn0032265|CG18301|chr2L:10531821-10533020|strand=+
	10	1199	FBgn0032405|firl|chr2L:12065576-12066775|strand=-
	11	1199	FBgn0032910|CG9265|chr2L:21070303-21071502|strand=-
	12	1199	FBgn0032949|Lamp1|chr2L:21573389-21574588|strand=+
	13	1199	FBgn0033226|puml|chr2R:7812504-7813703|strand=+
	14	1199	FBgn0034491|Hsl|chr2R:20257650-20258849|strand=+
	15	1199	FBgn0035206|sturkopf|chr3L:1312178-1313377|strand=-
	16	1199	FBgn0036449|bmm|chr3L:14785213-14786412|strand=-
	17	1199	FBgn0037265|spartin|chr3R:4654800-4655999|strand=+
	18	1199	FBgn0038038|CG5167|chr3R:12406532-12407731|strand=+
	19	1199	FBgn0039040|CG13833|chr3R:23034364-23035563|strand=-
	20	1199	FBgn0039043|CG17121|chr3R:23047015-23048214|strand=-
	21	1199	FBgn0039114|Lsd-1|chr3R:23763857-23765056|strand=+
	22	1199	FBgn0039141|spas|chr3R:24038215-24039414|strand=+
	23	1199	FBgn0040336|Seipin|chrX:2619799-2620998|strand=+
	24	1199	FBgn0052699|LPCAT|chrX:9578788-9579987|strand=-
	25	1199	FBgn0052803|Ldaf1|chrX:1900712-1901911|strand=-
	26	1199	FBgn0259682|Jabba|chr2R:18759883-18761082|strand=-
	27	1199	FBgn0263120|Acsl|chr2R:8665813-8667012|strand=+
	28	1199	FBgn0264560|garz|chr2R:12326360-12327559|strand=+
 Oligonucleotide statistics:
	Total occurrences    	33544
 Position interval parameters:
	Position interval    	20
	Number of windows    	60
	Total positions      	33544
	Degrees of freedom   	59
 K-mer clustering parameters:
	Number of clusters   	0
	Clustering method    	complete
 Position intervals:
	window	[min,max]	mid	seq	occ
	1	-30	[-599,-580]	-589.5	28	560
	2	-29	[-579,-560]	-569.5	28	560
	3	-28	[-559,-540]	-549.5	28	560
	4	-27	[-539,-520]	-529.5	28	560
	5	-26	[-519,-500]	-509.5	28	560
	6	-25	[-499,-480]	-489.5	28	560
	7	-24	[-479,-460]	-469.5	28	560
	8	-23	[-459,-440]	-449.5	28	560
	9	-22	[-439,-420]	-429.5	28	560
	10	-21	[-419,-400]	-409.5	28	560
	11	-20	[-399,-380]	-389.5	28	560
	12	-19	[-379,-360]	-369.5	28	560
	13	-18	[-359,-340]	-349.5	28	560
	14	-17	[-339,-320]	-329.5	28	560
	15	-16	[-319,-300]	-309.5	28	560
	16	-15	[-299,-280]	-289.5	28	560
	17	-14	[-279,-260]	-269.5	28	560
	18	-13	[-259,-240]	-249.5	28	560
	19	-12	[-239,-220]	-229.5	28	560
	20	-11	[-219,-200]	-209.5	28	560
	21	-10	[-199,-180]	-189.5	28	560
	22	-9	[-179,-160]	-169.5	28	560
	23	-8	[-159,-140]	-149.5	28	560
	24	-7	[-139,-120]	-129.5	28	560
	25	-6	[-119,-100]	-109.5	28	560
	26	-5	[-99,-80]	-89.5	28	560
	27	-4	[-79,-60]	-69.5	28	560
	28	-3	[-59,-40]	-49.5	28	560
	29	-2	[-39,-20]	-29.5	28	560
	30	-1	[-19,0]	-9.5	28	560
	31	0	[1,20]	10.5	28	560
	32	1	[21,40]	30.5	28	560
	33	2	[41,60]	50.5	28	560
	34	3	[61,80]	70.5	28	560
	35	4	[81,100]	90.5	28	560
	36	5	[101,120]	110.5	28	560
	37	6	[121,140]	130.5	28	560
	38	7	[141,160]	150.5	28	560
	39	8	[161,180]	170.5	28	560
	40	9	[181,200]	190.5	28	560
	41	10	[201,220]	210.5	28	560
	42	11	[221,240]	230.5	28	560
	43	12	[241,260]	250.5	28	560
	44	13	[261,280]	270.5	28	560
	45	14	[281,300]	290.5	28	560
	46	15	[301,320]	310.5	28	560
	47	16	[321,340]	330.5	28	560
	48	17	[341,360]	350.5	28	560
	49	18	[361,380]	370.5	28	560
	50	19	[381,400]	390.5	28	560
	51	20	[401,420]	410.5	28	560
	52	21	[421,440]	430.5	28	560
	53	22	[441,460]	450.5	28	560
	54	23	[461,480]	470.5	28	560
	55	24	[481,500]	490.5	28	560
	56	25	[501,520]	510.5	28	560
	57	26	[521,540]	530.5	28	560
	58	27	[541,560]	550.5	28	560
	59	28	[561,580]	570.5	28	560
	60	29	[581,600]	590.5	28	504

 Column headers
	1	seq            	pattern sequence
	2	id             	pattern identifier
	3	occ            	pattern occurrences
	4	chi2           	observed chi-square
	5	df             	degrees of freedom
	6	Pval           	P-value (probability for one word to be a false positive)
	7	Eval           	E-value; expected number of false positives (Eval = Pval * nb_tests)
	8	sig            	Significance (sig = -log10(Eval))
	9	rank           	rank of the pattern according to sorting criterion
	10	-589.5         	occurrences in window	1	[-599,-580]
	11	-569.5         	occurrences in window	2	[-579,-560]
	12	-549.5         	occurrences in window	3	[-559,-540]
	13	-529.5         	occurrences in window	4	[-539,-520]
	14	-509.5         	occurrences in window	5	[-519,-500]
	15	-489.5         	occurrences in window	6	[-499,-480]
	16	-469.5         	occurrences in window	7	[-479,-460]
	17	-449.5         	occurrences in window	8	[-459,-440]
	18	-429.5         	occurrences in window	9	[-439,-420]
	19	-409.5         	occurrences in window	10	[-419,-400]
	20	-389.5         	occurrences in window	11	[-399,-380]
	21	-369.5         	occurrences in window	12	[-379,-360]
	22	-349.5         	occurrences in window	13	[-359,-340]
	23	-329.5         	occurrences in window	14	[-339,-320]
	24	-309.5         	occurrences in window	15	[-319,-300]
	25	-289.5         	occurrences in window	16	[-299,-280]
	26	-269.5         	occurrences in window	17	[-279,-260]
	27	-249.5         	occurrences in window	18	[-259,-240]
	28	-229.5         	occurrences in window	19	[-239,-220]
	29	-209.5         	occurrences in window	20	[-219,-200]
	30	-189.5         	occurrences in window	21	[-199,-180]
	31	-169.5         	occurrences in window	22	[-179,-160]
	32	-149.5         	occurrences in window	23	[-159,-140]
	33	-129.5         	occurrences in window	24	[-139,-120]
	34	-109.5         	occurrences in window	25	[-119,-100]
	35	-89.5          	occurrences in window	26	[-99,-80]
	36	-69.5          	occurrences in window	27	[-79,-60]
	37	-49.5          	occurrences in window	28	[-59,-40]
	38	-29.5          	occurrences in window	29	[-39,-20]
	39	-9.5           	occurrences in window	30	[-19,0]
	40	10.5           	occurrences in window	31	[1,20]
	41	30.5           	occurrences in window	32	[21,40]
	42	50.5           	occurrences in window	33	[41,60]
	43	70.5           	occurrences in window	34	[61,80]
	44	90.5           	occurrences in window	35	[81,100]
	45	110.5          	occurrences in window	36	[101,120]
	46	130.5          	occurrences in window	37	[121,140]
	47	150.5          	occurrences in window	38	[141,160]
	48	170.5          	occurrences in window	39	[161,180]
	49	190.5          	occurrences in window	40	[181,200]
	50	210.5          	occurrences in window	41	[201,220]
	51	230.5          	occurrences in window	42	[221,240]
	52	250.5          	occurrences in window	43	[241,260]
	53	270.5          	occurrences in window	44	[261,280]
	54	290.5          	occurrences in window	45	[281,300]
	55	310.5          	occurrences in window	46	[301,320]
	56	330.5          	occurrences in window	47	[321,340]
	57	350.5          	occurrences in window	48	[341,360]
	58	370.5          	occurrences in window	49	[361,380]
	59	390.5          	occurrences in window	50	[381,400]
	60	410.5          	occurrences in window	51	[401,420]
	61	430.5          	occurrences in window	52	[421,440]
	62	450.5          	occurrences in window	53	[441,460]
	63	470.5          	occurrences in window	54	[461,480]
	64	490.5          	occurrences in window	55	[481,500]
	65	510.5          	occurrences in window	56	[501,520]
	66	530.5          	occurrences in window	57	[521,540]
	67	550.5          	occurrences in window	58	[541,560]
	68	570.5          	occurrences in window	59	[561,580]
	69	590.5          	occurrences in window	60	[581,600]
seq id occ chi2 df Pval Eval sig rank -589.5 -569.5 -549.5 -529.5 -509.5 -489.5 -469.5 -449.5 -429.5 -409.5 -389.5 -369.5 -349.5 -329.5 -309.5 -289.5 -269.5 -249.5 -229.5 -209.5 -189.5 -169.5 -149.5 -129.5 -109.5 -89.5 -69.5 -49.5 -29.5 -9.5 10.5 30.5 50.5 70.5 90.5 110.5 130.5 150.5 170.5 190.5 210.5 230.5 250.5 270.5 290.5 310.5 330.5 350.5 370.5 390.5 410.5 430.5 450.5 470.5 490.5 510.5 530.5 550.5 570.5 590.5
tt tt 2986 141.5 59 9.8e-09 1.6e-07 6.80 1 48 50 49 56 50 49 56 65 36 46 53 41 33 43 25 34 42 32 38 35 29 48 39 36 54 50 59 48 37 50 50 59 56 71 75 60 55 56 44 52 38 47 53 63 67 61 60 69 56 42 59 64 63 49 39 43 46 48 57 53
aa aa 3281 135.5 59 5.9e-08 9.5e-07 6.02 2 59 57 74 85 64 59 57 60 59 56 67 74 82 59 62 62 46 48 52 49 54 55 65 54 46 60 57 45 33 51 66 59 56 37 44 64 62 55 58 59 64 56 43 51 24 41 69 42 48 44 56 58 41 41 61 55 41 49 37 49
cc cc 1611 107.0 59 1.3e-04 0.0021 2.67 3 17 14 17 17 16 20 21 16 26 31 24 26 21 28 29 26 26 33 24 30 25 24 29 21 33 36 23 35 46 34 17 21 25 21 27 37 28 33 33 25 32 28 37 21 34 25 22 26 18 22 40 35 32 30 26 33 20 39 36 20
gg gg 1567 90.6 59 5.1e-03 0.082 1.09 4 25 17 23 12 19 26 25 18 25 25 26 37 31 16 28 33 25 40 46 29 28 31 31 25 23 22 21 22 18 27 30 22 36 36 20 25 25 30 20 26 30 24 16 23 30 24 22 24 21 30 22 20 25 38 29 23 29 29 34 30
ag ag 1943 81.0 59 3.0e-02 0.48 0.32 5 35 47 35 40 40 31 32 33 45 38 37 35 43 39 41 42 41 35 35 24 37 30 27 25 38 28 33 30 27 27 28 30 32 33 32 26 24 27 24 34 33 31 30 41 36 22 20 31 32 45 29 25 34 25 45 27 26 20 31 20
tg tg 2266 74.2 59 8.8e-02 1.4 -0.15 6 31 39 34 26 26 26 39 43 34 47 33 41 32 36 35 24 38 36 44 41 27 29 33 46 40 40 33 33 44 42 42 46 33 44 35 44 32 38 43 38 33 37 38 40 36 50 32 48 36 35 39 48 44 44 29 49 56 30 32 43
ta ta 1960 72.0 59 1.2e-01 1.9 -0.28 7 31 25 37 37 49 44 36 34 44 18 33 25 36 32 33 24 30 25 16 26 27 35 37 35 37 38 34 31 32 33 35 33 39 42 41 26 38 28 27 29 35 30 37 32 37 34 37 34 42 31 33 28 27 30 21 25 28 37 40 30
ct ct 1798 67.9 59 2.0e-01 3.2 -0.50 8 37 26 28 26 23 22 28 21 16 19 25 26 24 24 21 14 24 33 33 31 31 31 34 35 28 28 29 38 32 29 24 26 28 36 31 38 29 35 35 27 26 30 34 28 41 37 32 37 37 30 32 36 32 32 36 32 42 34 36 29
gt gt 1819 67.2 59 2.2e-01 3.5 -0.54 9 40 39 34 22 23 25 29 41 40 46 26 32 33 27 31 24 24 33 29 36 28 28 26 39 38 24 25 26 32 31 29 28 36 34 29 25 29 27 26 23 29 35 34 30 23 37 25 30 30 26 23 32 41 40 24 29 34 25 21 34
cg cg 1675 64.2 59 3.0e-01 4.8 -0.68 10 27 30 27 29 22 29 30 28 35 35 27 29 28 28 26 44 33 35 26 42 33 37 28 33 22 15 24 30 33 21 29 29 21 19 23 20 30 25 33 20 30 25 28 21 29 24 32 23 30 28 19 24 30 27 29 32 25 33 33 18
ga ga 1934 64.1 59 3.0e-01 4.8 -0.68 11 21 38 34 34 37 29 28 37 34 36 39 33 33 40 42 41 34 38 39 30 33 33 31 20 32 30 35 39 29 30 24 37 27 31 27 26 25 27 35 37 37 33 34 42 39 32 24 29 32 49 26 26 27 23 37 31 35 21 26 26
ac ac 1780 59.2 59 4.7e-01 7.5 -0.87 12 29 36 30 34 27 36 30 32 21 24 38 24 30 35 38 35 23 23 28 33 42 27 36 26 33 32 35 46 34 29 30 25 28 28 22 25 34 33 29 36 40 30 31 28 24 25 23 24 24 25 28 23 21 26 25 31 33 32 27 24
at at 2524 55.0 59 6.2e-01 10 -1.00 13 31 30 40 39 59 55 42 41 47 32 39 32 36 45 40 40 47 36 35 35 37 45 43 47 34 54 44 35 47 48 48 45 46 41 51 36 45 38 42 47 37 43 49 41 41 50 52 43 50 46 43 38 35 39 35 36 40 46 44 42
tc tc 1914 51.9 59 7.3e-01 12 -1.07 14 48 30 31 25 28 30 29 24 28 30 23 24 27 26 27 28 29 41 33 42 40 39 31 35 30 27 33 34 30 32 24 21 39 28 32 33 32 31 35 28 27 39 35 32 35 40 38 30 37 34 28 31 36 40 38 32 32 33 32 28
gc gc 2132 50.6 59 7.7e-01 12 -1.09 15 33 37 30 36 34 32 39 29 35 38 33 43 33 37 32 43 51 37 40 38 37 37 29 45 31 29 33 26 41 34 40 44 21 29 36 37 34 33 42 31 30 28 27 30 36 29 37 39 34 36 43 37 38 33 44 42 40 41 41 28
ca ca 2354 44.4 59 9.2e-01 15 -1.17 16 48 45 37 42 43 47 39 38 35 39 37 38 38 45 50 46 47 35 42 39 52 31 41 38 41 47 42 42 45 42 44 35 37 30 35 38 38 44 34 48 39 44 34 37 28 29 35 31 33 37 40 35 34 43 42 40 33 43 33 30 
 Host name	rsat
 Job started	2026-04-21.181432
 Job done	2026-04-21.181432
 Seconds	0.39
	user	0.39
	system	0.01
	cuser	0
;	csystem	0