; matrix-scan  -v 1 -quick -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2026/04/30/matrix-scan_2026-04-30.194925_fpMdmY.matrix -pseudo 1 -decimals 1 -2str -origin end -bginput -markov 1 -bg_pseudo 0.01 -return limits -return sites -lth score 1 -i $RSAT/public_html/tmp/www-data/2026/04/30/tmp_sequence_2026-04-30.194925_9VEo8C.fasta -seq_format fasta -n score
; Quick counting mode           
; Input files
;	input	$RSAT/public_html/tmp/www-data/2026/04/30/tmp_sequence_2026-04-30.194925_9VEo8C.fasta
; Matrix files
;	matrix 1	$RSAT/public_html/tmp/www-data/2026/04/30/matrix-scan_2026-04-30.194925_fpMdmY.matrix
; Sequence format      	fasta
; Pseudo counts        	1
; Background model
;	Method        	input
;	Markov order  	1
;	Strand        	undef
;	Background pseudo-frequency	0.01
;	Residue probabilities
;		a	0.29502
;		c	0.25104
;		g	0.23697
;		t	0.21698
; Thresholds	lower	upper
;	score 	1    	NA
; Output columns
;	1	seq_id
;	2	ft_type
;	3	ft_name
;	4	strand
;	5	start
;	6	end
;	7	sequence
;	8	weight
#seq_id	ft_type	ft_name	strand	start	end	sequence	weight
orb_cut	limit	START_END	D	-491	-1	.	0
;
; Matrices
;	matrix	name                    	ncol	nrow	pseudo	Wmin	Wmax	Wrange
;	1	ab_SANGER_10_FBgn0259750	21	4	0	-42.800	17.400	60.200	a:0.295 c:0.251 g:0.237 t:0.217 
; Number of sequences scanned	1
; Sum of sequence lengths	491
; N residues           	0
; Matches per matrix
;	matrix	name                    	matches	scored
;	1	ab_SANGER_10_FBgn0259750	0	0
;		TOTAL          	0	0
; Host name	rsat
; Job started	2026-04-30.194925
; Job done	2026-04-30.194925
; Seconds	0.18
;	user	0.19
;	system	0.02
;	cuser	0.1
;	csystem	0.03