; matrix-scan -v 1 -quick -matrix_format tab -m $RSAT/public_html/tmp/www-data/2026/04/30/matrix-scan_2026-04-30.234524_Gdnh5p.matrix -pseudo 1 -decimals 1 -2str -origin start -bginput -markov 1 -bg_pseudo 0.01 -return limits -return pval -uth pval 0.0001 -i $RSAT/public_html/tmp/www-data/2026/04/30/tmp_sequence_2026-04-30.234524_b7B8aE.fasta -seq_format fasta -n score ; Quick counting mode ; Input files ; input $RSAT/public_html/tmp/www-data/2026/04/30/tmp_sequence_2026-04-30.234524_b7B8aE.fasta ; Matrix files ; matrix 1 $RSAT/public_html/tmp/www-data/2026/04/30/matrix-scan_2026-04-30.234524_Gdnh5p.matrix ; Sequence format fasta ; Pseudo counts 1 ; Background model ; Method input ; Markov order 1 ; Strand undef ; Background pseudo-frequency 0.01 ; Residue probabilities ; a 0.16880 ; c 0.34089 ; g 0.32468 ; t 0.16563 ; Thresholds lower upper ; pval NA 0.0001 ; Output columns ; 1 seq_id ; 2 ft_type ; 3 ft_name ; 4 strand ; 5 start ; 6 end ; 7 sequence ; 8 weight #seq_id ft_type ft_name strand start end sequence weight Pval ln_Pval sig RSWS8N_18224 limit START_END D 1 300 . 0 0 0 0 RSWS8N_02730 limit START_END D 1 300 . 0 0 0 0 RSWS8N_16339 limit START_END D 1 300 . 0 0 0 0 RSWS8N_00535 limit START_END D 1 300 . 0 0 0 0 RSWS8N_16389 limit START_END D 1 300 . 0 0 0 0 RSWS8N_02190 limit START_END D 1 300 . 0 0 0 0 RSWS8N_16364 limit START_END D 1 300 . 0 0 0 0 RSWS8N_16319 limit START_END D 1 300 . 0 0 0 0 RSWS8N_16374 limit START_END D 1 300 . 0 0 0 0 RSWS8N_19664 limit START_END D 1 300 . 0 0 0 0 RSWS8N_12615 limit START_END D 1 300 . 0 0 0 0 RSWS8N_14620 limit START_END D 1 300 . 0 0 0 0 RSWS8N_16159 limit START_END D 1 300 . 0 0 0 0 RSWS8N_16414 limit START_END D 1 300 . 0 0 0 0 RSWS8N_00575 limit START_END D 1 300 . 0 0 0 0 RSWS8N_12545 limit START_END D 1 300 . 0 0 0 0 RSWS8N_14325 limit START_END D 1 300 . 0 0 0 0 RSWS8N_18169 limit START_END D 1 300 . 0 0 0 0 RSWS8N_00665 limit START_END D 1 300 . 0 0 0 0 RSWS8N_16349 limit START_END D 1 300 . 0 0 0 0 RSWS8N_18269 limit START_END D 1 300 . 0 0 0 0 RSWS8N_12630 limit START_END D 1 300 . 0 0 0 0 RSWS8N_00775 limit START_END D 1 300 . 0 0 0 0 RSWS8N_17969 limit START_END D 1 300 . 0 0 0 0 RSWS8N_03565 limit START_END D 1 300 . 0 0 0 0 RSWS8N_01115 limit START_END D 1 300 . 0 0 0 0 RSWS8N_16479 limit START_END D 1 300 . 0 0 0 0 RSWS8N_11440 limit START_END D 1 300 . 0 0 0 0 RSWS8N_15819 limit START_END D 1 300 . 0 0 0 0 RSWS8N_09265 limit START_END D 1 300 . 0 0 0 0 RSWS8N_12665 limit START_END D 1 300 . 0 0 0 0 RSWS8N_05465 limit START_END D 1 300 . 0 0 0 0 RSWS8N_01045 limit START_END D 1 300 . 0 0 0 0 RSWS8N_13045 limit START_END D 1 300 . 0 0 0 0 RSWS8N_t15127 limit START_END D 1 300 . 0 0 0 0 RSWS8N_05525 limit START_END D 1 300 . 0 0 0 0 RSWS8N_t19683 limit START_END D 1 300 . 0 0 0 0 RSWS8N_18039 limit START_END D 1 300 . 0 0 0 0 RSWS8N_16534 limit START_END D 1 300 . 0 0 0 0 RSWS8N_21159 limit START_END D 1 300 . 0 0 0 0 RSWS8N_15839 limit START_END D 1 300 . 0 0 0 0 RSWS8N_20194 limit START_END D 1 300 . 0 0 0 0 RSWS8N_18154 limit START_END D 1 300 . 0 0 0 0 RSWS8N_00595 limit START_END D 1 300 . 0 0 0 0 RSWS8N_16644 limit START_END D 1 300 . 0 0 0 0 RSWS8N_18109 limit START_END D 1 300 . 0 0 0 0 RSWS8N_15999 limit START_END D 1 300 . 0 0 0 0 RSWS8N_16154 limit START_END D 1 300 . 0 0 0 0 RSWS8N_16464 limit START_END D 1 300 . 0 0 0 0 RSWS8N_00805 limit START_END D 1 300 . 0 0 0 0 RSWS8N_00570 limit START_END D 1 300 . 0 0 0 0 RSWS8N_16539 limit START_END D 1 300 . 0 0 0 0 RSWS8N_00215 limit START_END D 1 300 . 0 0 0 0 RSWS8N_14205 limit START_END D 1 300 . 0 0 0 0 RSWS8N_18034 limit START_END D 1 300 . 0 0 0 0 RSWS8N_16354 limit START_END D 1 300 . 0 0 0 0 RSWS8N_09785 limit START_END D 1 300 . 0 0 0 0 RSWS8N_17979 limit START_END D 1 300 . 0 0 0 0 RSWS8N_16369 limit START_END D 1 300 . 0 0 0 0 RSWS8N_17774 limit START_END D 1 300 . 0 0 0 0 RSWS8N_20744 limit START_END D 1 300 . 0 0 0 0 RSWS8N_07380 limit START_END D 1 300 . 0 0 0 0 RSWS8N_14345 limit START_END D 1 300 . 0 0 0 0 RSWS8N_16104 limit START_END D 1 300 . 0 0 0 0 RSWS8N_17239 limit START_END D 1 300 . 0 0 0 0 RSWS8N_16099 limit START_END D 1 300 . 0 0 0 0 RSWS8N_05360 limit START_END D 1 300 . 0 0 0 0 RSWS8N_18609 limit START_END D 1 300 . 0 0 0 0 RSWS8N_15209 limit START_END D 1 300 . 0 0 0 0 RSWS8N_15869 limit START_END D 1 300 . 0 0 0 0 RSWS8N_02995 limit START_END D 1 300 . 0 0 0 0 RSWS8N_20254 limit START_END D 1 300 . 0 0 0 0 RSWS8N_15724 limit START_END D 1 300 . 0 0 0 0 RSWS8N_15924 limit START_END D 1 300 . 0 0 0 0 RSWS8N_09680 limit START_END D 1 300 . 0 0 0 0 RSWS8N_20784 limit START_END D 1 300 . 0 0 0 0 RSWS8N_15919 limit START_END D 1 300 . 0 0 0 0 RSWS8N_03435 limit START_END D 1 300 . 0 0 0 0 RSWS8N_15115 limit START_END D 1 300 . 0 0 0 0 RSWS8N_15949 limit START_END D 1 300 . 0 0 0 0 RSWS8N_12675 limit START_END D 1 300 . 0 0 0 0 RSWS8N_19954 limit START_END D 1 300 . 0 0 0 0 RSWS8N_16384 limit START_END D 1 300 . 0 0 0 0 RSWS8N_12575 limit START_END D 1 300 . 0 0 0 0 RSWS8N_01050 limit START_END D 1 300 . 0 0 0 0 RSWS8N_03085 limit START_END D 1 300 . 0 0 0 0 RSWS8N_07400 limit START_END D 1 300 . 0 0 0 0 RSWS8N_08845 limit START_END D 1 300 . 0 0 0 0 RSWS8N_15979 limit START_END D 1 300 . 0 0 0 0 RSWS8N_00815 limit START_END D 1 300 . 0 0 0 0 RSWS8N_16129 limit START_END D 1 300 . 0 0 0 0 RSWS8N_09715 limit START_END D 1 300 . 0 0 0 0 RSWS8N_15994 limit START_END D 1 300 . 0 0 0 0 RSWS8N_20439 limit START_END D 1 300 . 0 0 0 0 RSWS8N_01675 limit START_END D 1 300 . 0 0 0 0 RSWS8N_15934 limit START_END D 1 300 . 0 0 0 0 RSWS8N_00800 limit START_END D 1 300 . 0 0 0 0 RSWS8N_02735 limit START_END D 1 300 . 0 0 0 0 RSWS8N_13080 limit START_END D 1 300 . 0 0 0 0 RSWS8N_14200 limit START_END D 1 300 . 0 0 0 0 RSWS8N_11500 limit START_END D 1 300 . 0 0 0 0 RSWS8N_20259 limit START_END D 1 300 . 0 0 0 0 RSWS8N_16519 limit START_END D 1 300 . 0 0 0 0 RSWS8N_19669 limit START_END D 1 300 . 0 0 0 0 RSWS8N_19949 limit START_END D 1 300 . 0 0 0 0 RSWS8N_04450 limit START_END D 1 300 . 0 0 0 0 RSWS8N_00620 limit START_END D 1 300 . 0 0 0 0 RSWS8N_12570 limit START_END D 1 300 . 0 0 0 0 RSWS8N_11325 limit START_END D 1 300 . 0 0 0 0 RSWS8N_02730 site matrix-scan_2026-04-30 D 17 33 CCACAGCCTTTCGGATG 12.1 2.5e-09 -19.807 8.602 RSWS8N_00775 site matrix-scan_2026-04-30 D 204 220 CGTCCGCCTTTCCGCTG 10.1 2.9e-07 -15.053 6.538 RSWS8N_01045 site matrix-scan_2026-04-30 D 69 85 CCTACGCCTTTCGCACG 7.2 4.6e-05 -9.987 4.337 RSWS8N_16534 site matrix-scan_2026-04-30 D 230 246 CCACAGGATTTCCGGTG 8.5 5.7e-06 -12.075 5.244 RSWS8N_00570 site matrix-scan_2026-04-30 R 37 53 CCTCCGATTTTCCGATG 7.0 6.2e-05 -9.688 4.208 RSWS8N_17774 site matrix-scan_2026-04-30 D 54 70 CGTCAGCCTGTCGCCCG 7.4 3.4e-05 -10.289 4.469 RSWS8N_02995 site matrix-scan_2026-04-30 R 27 43 CTACGGCCTATAGGACC 7.7 2.2e-05 -10.724 4.658 RSWS8N_15115 site matrix-scan_2026-04-30 D 224 240 CGCCAGCCTGTCCGAAG 9.8 5.3e-07 -14.450 6.276 RSWS8N_01050 site matrix-scan_2026-04-30 R 221 237 CCTACGCCTTTCGCACG 7.2 4.6e-05 -9.987 4.337 RSWS8N_02735 site matrix-scan_2026-04-30 D 66 82 CCACAACCGGTCGCAAG 6.7 9.5e-05 -9.262 4.022 RSWS8N_14200 site matrix-scan_2026-04-30 R 1 17 CCTGAGCCTGTCGGACC 7.1 5.3e-05 -9.845 4.276 RSWS8N_11500 site matrix-scan_2026-04-30 R 118 134 TCACAACCTTTCAGGAG 6.8 8.2e-05 -9.409 4.086 RSWS8N_19669 site matrix-scan_2026-04-30 R 37 53 CCTCCGATTTTCCGATG 7.0 6.2e-05 -9.688 4.208 ; ; Matrices ; matrix name ncol nrow pseudo Wmin Wmax Wrange ; 1 matrix-scan_2026-04-30 17 4 0 -11.800 13.400 25.200 a:0.169 c:0.341 g:0.325 t:0.166 ; Number of sequences scanned 109 ; Sum of sequence lengths 32700 ; N residues 100 ; Matches per matrix ; matrix name matches scored ; 1 matrix-scan_2026-04-30 13 0 ; TOTAL 13 0 ; Host name rsat ; Job started 2026-04-30.234524 ; Job done 2026-04-30.234525 ; Seconds 0.47 ; user 0.47 ; system 0.04 ; cuser 0.61 ; csystem 0.04