; matrix-scan -v 1 -quick -matrix_format tab -m $RSAT/public_html/tmp/www-data/2026/04/30/matrix-scan_2026-04-30.234852_tLMWTN.matrix -pseudo 1 -decimals 1 -2str -origin start -bginput -markov 1 -bg_pseudo 0.01 -return limits -return pval -uth pval 0.0001 -i $RSAT/public_html/tmp/www-data/2026/04/30/tmp_sequence_2026-04-30.234852_Y1sFwK.fasta -seq_format fasta -n score ; Quick counting mode ; Input files ; input $RSAT/public_html/tmp/www-data/2026/04/30/tmp_sequence_2026-04-30.234852_Y1sFwK.fasta ; Matrix files ; matrix 1 $RSAT/public_html/tmp/www-data/2026/04/30/matrix-scan_2026-04-30.234852_tLMWTN.matrix ; Sequence format fasta ; Pseudo counts 1 ; Background model ; Method input ; Markov order 1 ; Strand undef ; Background pseudo-frequency 0.01 ; Residue probabilities ; a 0.17486 ; c 0.32802 ; g 0.32657 ; t 0.17056 ; Thresholds lower upper ; pval NA 0.0001 ; Output columns ; 1 seq_id ; 2 ft_type ; 3 ft_name ; 4 strand ; 5 start ; 6 end ; 7 sequence ; 8 weight #seq_id ft_type ft_name strand start end sequence weight Pval ln_Pval sig RSWS8N_05965 limit START_END D 1 300 . 0 0 0 0 RSWS8N_20514 limit START_END D 1 300 . 0 0 0 0 RSWS8N_17719 limit START_END D 1 300 . 0 0 0 0 RSWS8N_05360 limit START_END D 1 300 . 0 0 0 0 RSWS8N_17769 limit START_END D 1 300 . 0 0 0 0 RSWS8N_19984 limit START_END D 1 300 . 0 0 0 0 RSWS8N_10520 limit START_END D 1 300 . 0 0 0 0 RSWS8N_08925 limit START_END D 1 300 . 0 0 0 0 RSWS8N_18364 limit START_END D 1 300 . 0 0 0 0 RSWS8N_05995 limit START_END D 1 300 . 0 0 0 0 RSWS8N_00375 limit START_END D 1 300 . 0 0 0 0 RSWS8N_14080 limit START_END D 1 300 . 0 0 0 0 RSWS8N_14385 limit START_END D 1 300 . 0 0 0 0 RSWS8N_02755 limit START_END D 1 300 . 0 0 0 0 RSWS8N_13400 limit START_END D 1 300 . 0 0 0 0 RSWS8N_14515 limit START_END D 1 300 . 0 0 0 0 RSWS8N_07160 limit START_END D 1 300 . 0 0 0 0 RSWS8N_12830 limit START_END D 1 300 . 0 0 0 0 RSWS8N_00355 limit START_END D 1 300 . 0 0 0 0 RSWS8N_01835 limit START_END D 1 300 . 0 0 0 0 RSWS8N_20414 limit START_END D 1 300 . 0 0 0 0 RSWS8N_14380 limit START_END D 1 300 . 0 0 0 0 RSWS8N_09195 limit START_END D 1 300 . 0 0 0 0 RSWS8N_09525 limit START_END D 1 300 . 0 0 0 0 RSWS8N_09020 limit START_END D 1 300 . 0 0 0 0 RSWS8N_04160 limit START_END D 1 300 . 0 0 0 0 RSWS8N_19494 limit START_END D 1 300 . 0 0 0 0 RSWS8N_01155 limit START_END D 1 300 . 0 0 0 0 RSWS8N_00170 limit START_END D 1 300 . 0 0 0 0 RSWS8N_14885 limit START_END D 1 300 . 0 0 0 0 RSWS8N_02450 limit START_END D 1 300 . 0 0 0 0 RSWS8N_00185 limit START_END D 1 300 . 0 0 0 0 RSWS8N_09465 limit START_END D 1 300 . 0 0 0 0 RSWS8N_15579 limit START_END D 1 300 . 0 0 0 0 RSWS8N_02745 limit START_END D 1 300 . 0 0 0 0 RSWS8N_12535 limit START_END D 1 300 . 0 0 0 0 RSWS8N_08145 limit START_END D 1 300 . 0 0 0 0 RSWS8N_09290 limit START_END D 1 300 . 0 0 0 0 RSWS8N_02465 limit START_END D 1 300 . 0 0 0 0 RSWS8N_10560 limit START_END D 1 300 . 0 0 0 0 RSWS8N_11365 limit START_END D 1 300 . 0 0 0 0 RSWS8N_19164 limit START_END D 1 300 . 0 0 0 0 RSWS8N_14445 limit START_END D 1 300 . 0 0 0 0 RSWS8N_02705 limit START_END D 1 300 . 0 0 0 0 RSWS8N_02455 limit START_END D 1 300 . 0 0 0 0 RSWS8N_05860 limit START_END D 1 300 . 0 0 0 0 RSWS8N_07295 limit START_END D 1 300 . 0 0 0 0 RSWS8N_05950 limit START_END D 1 300 . 0 0 0 0 RSWS8N_19634 limit START_END D 1 300 . 0 0 0 0 RSWS8N_01945 limit START_END D 1 300 . 0 0 0 0 RSWS8N_16809 limit START_END D 1 300 . 0 0 0 0 RSWS8N_00500 limit START_END D 1 300 . 0 0 0 0 RSWS8N_02185 limit START_END D 1 300 . 0 0 0 0 RSWS8N_03775 limit START_END D 1 300 . 0 0 0 0 RSWS8N_03585 limit START_END D 1 300 . 0 0 0 0 RSWS8N_11220 limit START_END D 1 300 . 0 0 0 0 RSWS8N_10255 limit START_END D 1 300 . 0 0 0 0 RSWS8N_10260 limit START_END D 1 300 . 0 0 0 0 RSWS8N_11370 limit START_END D 1 300 . 0 0 0 0 RSWS8N_01830 limit START_END D 1 300 . 0 0 0 0 RSWS8N_04570 limit START_END D 1 300 . 0 0 0 0 RSWS8N_11185 limit START_END D 1 300 . 0 0 0 0 RSWS8N_11515 limit START_END D 1 300 . 0 0 0 0 RSWS8N_10010 limit START_END D 1 300 . 0 0 0 0 RSWS8N_03815 limit START_END D 1 300 . 0 0 0 0 RSWS8N_09245 limit START_END D 1 300 . 0 0 0 0 RSWS8N_12130 limit START_END D 1 300 . 0 0 0 0 RSWS8N_17484 limit START_END D 1 300 . 0 0 0 0 RSWS8N_13405 limit START_END D 1 300 . 0 0 0 0 RSWS8N_08665 limit START_END D 1 300 . 0 0 0 0 RSWS8N_15604 limit START_END D 1 300 . 0 0 0 0 RSWS8N_00495 limit START_END D 1 300 . 0 0 0 0 RSWS8N_19014 limit START_END D 1 300 . 0 0 0 0 RSWS8N_13010 limit START_END D 1 300 . 0 0 0 0 RSWS8N_01720 limit START_END D 1 300 . 0 0 0 0 RSWS8N_14065 limit START_END D 1 300 . 0 0 0 0 RSWS8N_17754 limit START_END D 1 300 . 0 0 0 0 RSWS8N_17424 limit START_END D 1 300 . 0 0 0 0 RSWS8N_17024 limit START_END D 1 300 . 0 0 0 0 RSWS8N_17759 limit START_END D 1 300 . 0 0 0 0 RSWS8N_19609 limit START_END D 1 300 . 0 0 0 0 RSWS8N_00450 limit START_END D 1 300 . 0 0 0 0 RSWS8N_17119 limit START_END D 1 300 . 0 0 0 0 RSWS8N_11990 limit START_END D 1 300 . 0 0 0 0 RSWS8N_15309 limit START_END D 1 300 . 0 0 0 0 RSWS8N_04065 limit START_END D 1 300 . 0 0 0 0 RSWS8N_09560 limit START_END D 1 300 . 0 0 0 0 RSWS8N_17034 limit START_END D 1 300 . 0 0 0 0 RSWS8N_06435 limit START_END D 1 300 . 0 0 0 0 RSWS8N_17049 limit START_END D 1 300 . 0 0 0 0 RSWS8N_11260 limit START_END D 1 300 . 0 0 0 0 RSWS8N_05970 limit START_END D 1 300 . 0 0 0 0 RSWS8N_10860 limit START_END D 1 300 . 0 0 0 0 RSWS8N_12370 limit START_END D 1 300 . 0 0 0 0 RSWS8N_10695 limit START_END D 1 300 . 0 0 0 0 RSWS8N_14800 limit START_END D 1 300 . 0 0 0 0 RSWS8N_13680 limit START_END D 1 300 . 0 0 0 0 RSWS8N_11040 limit START_END D 1 300 . 0 0 0 0 RSWS8N_11035 limit START_END D 1 300 . 0 0 0 0 RSWS8N_14805 limit START_END D 1 300 . 0 0 0 0 RSWS8N_05900 limit START_END D 1 300 . 0 0 0 0 RSWS8N_10885 limit START_END D 1 300 . 0 0 0 0 RSWS8N_03315 limit START_END D 1 300 . 0 0 0 0 RSWS8N_10070 limit START_END D 1 300 . 0 0 0 0 RSWS8N_12365 limit START_END D 1 300 . 0 0 0 0 RSWS8N_14710 limit START_END D 1 300 . 0 0 0 0 RSWS8N_06350 limit START_END D 1 300 . 0 0 0 0 RSWS8N_12985 limit START_END D 1 300 . 0 0 0 0 RSWS8N_17764 limit START_END D 1 300 . 0 0 0 0 RSWS8N_06445 limit START_END D 1 300 . 0 0 0 0 RSWS8N_03585 site matrix-scan_2026-04-30 R 2 18 CTACCGGCTTGCCGAGG 8.3 7.9e-06 -11.749 5.102 RSWS8N_12130 site matrix-scan_2026-04-30 D 238 254 CCTTACCCTTTCTAAAG 7.5 2.9e-05 -10.448 4.538 RSWS8N_03315 site matrix-scan_2026-04-30 D 268 284 CGTCAGCCTTTCCGCCT 8.0 1.3e-05 -11.251 4.886 ; ; Matrices ; matrix name ncol nrow pseudo Wmin Wmax Wrange ; 1 matrix-scan_2026-04-30 17 4 0 -11.800 13.400 25.200 a:0.175 c:0.328 g:0.327 t:0.171 ; Number of sequences scanned 110 ; Sum of sequence lengths 33000 ; N residues 0 ; Matches per matrix ; matrix name matches scored ; 1 matrix-scan_2026-04-30 3 0 ; TOTAL 3 0 ; Host name rsat ; Job started 2026-04-30.234852 ; Job done 2026-04-30.234853 ; Seconds 0.68 ; user 0.68 ; system 0.02 ; cuser 0.58 ; csystem 0.06