; convert-matrix -v 1 -i $RSAT/public_html/tmp/www-data/2026/04/30/oligo-analysis_2026-04-30.003956_EgnUdf_pssm_count_matrices.tf -from tf -to tab -return counts -return logo -logo_format png -logo_file $RSAT/public_html/tmp/www-data/2026/04/30/oligo-analysis_2026-04-30.003956_EgnUdf_pssm_count_matrices_logo -o $RSAT/public_html/tmp/www-data/2026/04/30/oligo-analysis_2026-04-30.003956_EgnUdf_pssm_count_matrices_links.txt
; Input files
; input /var/www/html/rsat/public_html/tmp/www-data/2026/04/30/oligo-analysis_2026-04-30.003956_EgnUdf_pssm_count_matrices.tf
; Input format tf
; Output files
; output /var/www/html/rsat/public_html/tmp/www-data/2026/04/30/oligo-analysis_2026-04-30.003956_EgnUdf_pssm_count_matrices_links.txt
; Output format tab
; pseudo-weight 1
a 0 0 0 2 0 0 0 0 0 0 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0
c 1 1 2 0 2 0 0 2 1 2 1 0 0 1 2 0 1 0 2 2 0 1 2 2 0 1 1 0 2 2
g 1 1 0 0 0 2 2 0 1 0 1 1 1 0 0 1 1 2 0 0 2 1 0 0 2 1 0 1 0 0
t 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/04/30//oligo-analysis_2026-04-30.003956_EgnUdf_pssm_count_matrices_logo_m1.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/04/30//oligo-analysis_2026-04-30.003956_EgnUdf_pssm_count_matrices_logo_m1_rc.png
;
a 0 0 3 0 0 0 0 1 0 0 0 1 0 0 0 1 1 0 0 0 1 0
c 4 4 0 2 4 4 4 0 0 3 4 3 0 3 0 3 4 0 2 2 2 3
g 1 1 2 2 0 1 0 4 3 1 0 1 5 2 5 1 0 5 0 3 2 1
t 0 0 0 1 1 0 1 0 2 1 1 0 0 0 0 0 0 0 3 0 0 1
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/04/30//oligo-analysis_2026-04-30.003956_EgnUdf_pssm_count_matrices_logo_m2.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/04/30//oligo-analysis_2026-04-30.003956_EgnUdf_pssm_count_matrices_logo_m2_rc.png
;
a 0 3 3 4 0 0 1 0 2 0 0 0 0 1 3 1 2
c 0 1 1 0 1 5 0 5 3 1 5 0 4 3 0 1 1
g 4 1 0 1 4 0 4 0 0 4 0 4 1 1 1 2 2
t 1 0 1 0 0 0 0 0 0 0 0 1 0 0 1 1 0
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/04/30//oligo-analysis_2026-04-30.003956_EgnUdf_pssm_count_matrices_logo_m3.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/04/30//oligo-analysis_2026-04-30.003956_EgnUdf_pssm_count_matrices_logo_m3_rc.png
;
a 0 2 0 0 0 0 0 0 1 0 0 0 0 2 0 1 3 2 2
c 2 1 5 4 0 0 4 1 4 0 0 2 2 2 0 1 1 1 0
g 2 1 0 1 1 5 1 4 0 5 4 1 3 1 5 3 1 0 3
t 1 1 0 0 4 0 0 0 0 0 1 2 0 0 0 0 0 2 0
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/04/30//oligo-analysis_2026-04-30.003956_EgnUdf_pssm_count_matrices_logo_m4.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/04/30//oligo-analysis_2026-04-30.003956_EgnUdf_pssm_count_matrices_logo_m4_rc.png
;
a 1 1 2 0 1 0 0 0 0 1 0 1 0 0 0 1 0 0 0 0 1 0 0 0 1 0 0
c 1 0 0 3 1 0 2 0 2 0 0 2 0 0 3 2 1 1 2 0 2 2 1 2 0 0 1
g 1 0 1 0 1 3 1 3 0 2 3 0 2 2 0 0 1 2 1 3 0 1 2 0 0 3 2
t 0 2 0 0 0 0 0 0 1 0 0 0 1 1 0 0 1 0 0 0 0 0 0 1 2 0 0
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/04/30//oligo-analysis_2026-04-30.003956_EgnUdf_pssm_count_matrices_logo_m5.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/04/30//oligo-analysis_2026-04-30.003956_EgnUdf_pssm_count_matrices_logo_m5_rc.png
;
a 0 0 2 0 0 0 0 0 0 3 3 4 3
c 2 4 3 0 6 6 6 0 6 1 1 1 2
g 2 2 0 6 0 0 0 6 0 2 1 1 0
t 2 0 1 0 0 0 0 0 0 0 1 0 1
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/04/30//oligo-analysis_2026-04-30.003956_EgnUdf_pssm_count_matrices_logo_m6.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/04/30//oligo-analysis_2026-04-30.003956_EgnUdf_pssm_count_matrices_logo_m6_rc.png
;
a 0 0 0 1 5 0 0 1 0 1 1 1 0 1 0 2 0 2 1 0 0 0 2 0
c 3 2 7 5 0 5 6 5 7 1 0 4 4 4 2 4 1 4 6 0 4 2 3 6
g 2 5 0 1 2 1 0 1 0 5 5 1 2 1 5 1 6 1 0 7 0 5 2 0
t 2 0 0 0 0 1 1 0 0 0 1 1 1 1 0 0 0 0 0 0 3 0 0 1
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/04/30//oligo-analysis_2026-04-30.003956_EgnUdf_pssm_count_matrices_logo_m7.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/04/30//oligo-analysis_2026-04-30.003956_EgnUdf_pssm_count_matrices_logo_m7_rc.png
;
a 1 2 0 1 1 0 1 0 0 0 1 0 1 0 0 0 0 0 1 1 1
c 2 1 3 2 3 4 0 0 3 2 3 1 2 0 3 4 0 2 1 2 2
g 1 1 0 0 0 0 2 3 1 2 0 3 0 4 1 0 4 1 2 1 0
t 0 0 1 1 0 0 1 1 0 0 0 0 1 0 0 0 0 1 0 0 1
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/04/30//oligo-analysis_2026-04-30.003956_EgnUdf_pssm_count_matrices_logo_m8.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/04/30//oligo-analysis_2026-04-30.003956_EgnUdf_pssm_count_matrices_logo_m8_rc.png
;
a 1 1 1 3 0 0 0 0 0 0 0 1 0 0 1 1 0 0 0 1 0 0
c 1 2 2 0 5 0 1 5 1 4 1 1 0 5 4 0 1 0 1 2 0 1
g 3 1 2 2 0 4 3 0 3 1 4 3 4 0 0 4 3 5 3 0 4 4
t 0 1 0 0 0 1 1 0 1 0 0 0 1 0 0 0 1 0 1 2 1 0
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/04/30//oligo-analysis_2026-04-30.003956_EgnUdf_pssm_count_matrices_logo_m9.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/04/30//oligo-analysis_2026-04-30.003956_EgnUdf_pssm_count_matrices_logo_m9_rc.png
;
a 0 0 1 2 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 1 0 1 0 0
c 1 2 1 1 3 0 0 3 0 3 2 0 1 2 2 0 3 0 3 3 0 0 2 1 1 2
g 2 1 1 0 0 2 3 0 3 0 1 1 2 0 1 3 0 3 0 0 3 1 1 1 2 0
t 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 1
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/04/30//oligo-analysis_2026-04-30.003956_EgnUdf_pssm_count_matrices_logo_m10.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/04/30//oligo-analysis_2026-04-30.003956_EgnUdf_pssm_count_matrices_logo_m10_rc.png
;
a 1 1 0 0 0 0 0 0 1 2
c 1 3 7 7 0 0 0 7 1 3
g 2 2 0 0 7 0 7 0 3 1
t 3 1 0 0 0 7 0 0 2 1
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/04/30//oligo-analysis_2026-04-30.003956_EgnUdf_pssm_count_matrices_logo_m11.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/04/30//oligo-analysis_2026-04-30.003956_EgnUdf_pssm_count_matrices_logo_m11_rc.png
;
a 0 2 3 0 1 0 1 0 0 0 0 1 1 2 1 0 0 0 0 0 1 1
c 1 2 1 4 1 3 0 4 4 0 2 2 3 0 0 1 0 3 3 3 0 0
g 1 0 0 0 2 1 3 0 0 4 1 1 0 1 3 1 3 0 1 0 1 1
t 2 0 0 0 0 0 0 0 0 0 1 0 0 1 0 2 1 1 0 1 2 2
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/04/30//oligo-analysis_2026-04-30.003956_EgnUdf_pssm_count_matrices_logo_m12.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/04/30//oligo-analysis_2026-04-30.003956_EgnUdf_pssm_count_matrices_logo_m12_rc.png
;
a 1 1 4 0 0 0 0 0 0 5 1 3 2
c 1 3 1 0 6 6 6 0 4 1 1 1 1
g 1 2 0 6 0 0 0 6 1 0 1 1 1
t 3 0 1 0 0 0 0 0 1 0 3 1 2
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/04/30//oligo-analysis_2026-04-30.003956_EgnUdf_pssm_count_matrices_logo_m13.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/04/30//oligo-analysis_2026-04-30.003956_EgnUdf_pssm_count_matrices_logo_m13_rc.png
;
a 1 2 2 1 0 0 0 0 0 0 0 0 1 2 3 3 3 3
c 0 3 2 0 0 6 0 6 0 0 5 0 5 1 1 3 3 1
g 4 0 4 7 8 1 8 1 7 7 2 8 2 1 4 0 0 2
t 3 3 0 0 0 1 0 1 1 1 1 0 0 4 0 2 2 2
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/04/30//oligo-analysis_2026-04-30.003956_EgnUdf_pssm_count_matrices_logo_m14.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/04/30//oligo-analysis_2026-04-30.003956_EgnUdf_pssm_count_matrices_logo_m14_rc.png
;
a 2 2 2 2 0 0 1 2 0 0 0 0 2 7 2 3 2
c 4 4 6 4 11 0 1 8 3 12 0 0 4 0 1 1 4
g 4 4 3 5 0 12 9 1 9 0 11 12 6 3 7 6 4
t 2 2 1 1 1 0 1 1 0 0 1 0 0 2 2 2 2
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/04/30//oligo-analysis_2026-04-30.003956_EgnUdf_pssm_count_matrices_logo_m15.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/04/30//oligo-analysis_2026-04-30.003956_EgnUdf_pssm_count_matrices_logo_m15_rc.png
;
a 1 0 1 1 6 0 1 1 1 0 0 0 0 0 0 2 1 2 1
c 2 0 6 6 0 6 6 6 7 1 5 2 7 7 1 4 2 3 3
g 0 3 1 0 0 0 1 0 0 7 3 6 1 0 7 2 5 2 1
t 5 5 0 1 2 2 0 1 0 0 0 0 0 1 0 0 0 1 3
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/04/30//oligo-analysis_2026-04-30.003956_EgnUdf_pssm_count_matrices_logo_m16.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/04/30//oligo-analysis_2026-04-30.003956_EgnUdf_pssm_count_matrices_logo_m16_rc.png
;
a 2 5 2 0 0 1 0 16 10 4 5
c 5 3 2 15 16 0 16 0 2 5 6
g 3 2 3 1 0 14 0 0 2 4 3
t 6 6 9 0 0 1 0 0 2 3 2
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/04/30//oligo-analysis_2026-04-30.003956_EgnUdf_pssm_count_matrices_logo_m17.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/04/30//oligo-analysis_2026-04-30.003956_EgnUdf_pssm_count_matrices_logo_m17_rc.png
;
a 3 2 5 1 1 1 0 1 1 0 0 1 2 3 2
c 7 4 3 14 12 1 13 0 14 12 0 7 3 4 6
g 1 3 4 0 2 13 2 14 0 3 15 4 7 5 5
t 4 6 3 0 0 0 0 0 0 0 0 3 3 3 2
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/04/30//oligo-analysis_2026-04-30.003956_EgnUdf_pssm_count_matrices_logo_m18.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/04/30//oligo-analysis_2026-04-30.003956_EgnUdf_pssm_count_matrices_logo_m18_rc.png
;
a 3 2 8 2 0 0 0 0 0 7 1 4
c 0 4 0 0 9 9 8 0 1 2 1 3
g 3 2 1 7 0 0 1 9 7 0 5 1
t 3 1 0 0 0 0 0 0 1 0 2 1
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/04/30//oligo-analysis_2026-04-30.003956_EgnUdf_pssm_count_matrices_logo_m19.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/04/30//oligo-analysis_2026-04-30.003956_EgnUdf_pssm_count_matrices_logo_m19_rc.png
;
; Host name rsat
; Job started 2026-04-30.004009
; Job done 2026-04-30.004015
; Seconds 0.22
; user 0.22
; system 0.19
; cuser 4.98
; csystem 0.75