; convert-matrix -v 1 -i $RSAT/public_html/tmp/www-data/2026/04/30/oligo-analysis_2026-04-30.004020_GkgavH_pssm_count_matrices.tf -from tf -to tab -return counts -return logo -logo_format png -logo_file $RSAT/public_html/tmp/www-data/2026/04/30/oligo-analysis_2026-04-30.004020_GkgavH_pssm_count_matrices_logo -o $RSAT/public_html/tmp/www-data/2026/04/30/oligo-analysis_2026-04-30.004020_GkgavH_pssm_count_matrices_links.txt
; Input files
; input /var/www/html/rsat/public_html/tmp/www-data/2026/04/30/oligo-analysis_2026-04-30.004020_GkgavH_pssm_count_matrices.tf
; Input format tf
; Output files
; output /var/www/html/rsat/public_html/tmp/www-data/2026/04/30/oligo-analysis_2026-04-30.004020_GkgavH_pssm_count_matrices_links.txt
; Output format tab
; pseudo-weight 1
a 4 0 1 7 0 0 7 0 0 4 0 0 0 2 1 1
c 0 3 1 0 7 0 0 7 0 3 7 0 6 4 0 4
g 2 4 3 0 0 7 0 0 7 0 0 7 1 1 6 1
t 1 0 2 0 0 0 0 0 0 0 0 0 0 0 0 1
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/04/30//oligo-analysis_2026-04-30.004020_GkgavH_pssm_count_matrices_logo_m1.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/04/30//oligo-analysis_2026-04-30.004020_GkgavH_pssm_count_matrices_logo_m1_rc.png
;
a 2 4 0 0 12 0 1 0 0 0 2 2
c 5 4 11 13 0 13 11 12 12 1 5 6
g 2 3 1 0 0 0 1 1 0 12 4 2
t 4 2 1 0 1 0 0 0 1 0 2 3
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/04/30//oligo-analysis_2026-04-30.004020_GkgavH_pssm_count_matrices_logo_m2.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/04/30//oligo-analysis_2026-04-30.004020_GkgavH_pssm_count_matrices_logo_m2_rc.png
;
a 0 1 0 9 9 0 9 9 4 3
c 5 1 9 0 0 0 0 0 1 2
g 1 3 0 0 0 9 0 0 1 3
t 3 4 0 0 0 0 0 0 3 1
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/04/30//oligo-analysis_2026-04-30.004020_GkgavH_pssm_count_matrices_logo_m3.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/04/30//oligo-analysis_2026-04-30.004020_GkgavH_pssm_count_matrices_logo_m3_rc.png
;
a 3 4 9 0 0 0 0 0 0 0 0 1
c 2 4 1 8 1 0 0 0 10 11 4 4
g 3 2 1 1 0 0 0 0 0 0 3 3
t 3 1 0 2 10 11 11 11 1 0 4 3
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/04/30//oligo-analysis_2026-04-30.004020_GkgavH_pssm_count_matrices_logo_m4.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/04/30//oligo-analysis_2026-04-30.004020_GkgavH_pssm_count_matrices_logo_m4_rc.png
;
a 1 4 9 8 0 0 0 0 10 0 1 2
c 0 2 0 2 0 10 0 10 0 0 5 1
g 6 1 1 0 8 0 9 0 0 10 4 3
t 3 3 0 0 2 0 1 0 0 0 0 4
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/04/30//oligo-analysis_2026-04-30.004020_GkgavH_pssm_count_matrices_logo_m5.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/04/30//oligo-analysis_2026-04-30.004020_GkgavH_pssm_count_matrices_logo_m5_rc.png
;
a 3 0 0 1 0 9 9 0 9 9 4 3
c 3 2 5 1 9 0 0 0 0 0 1 2
g 1 3 1 3 0 0 0 9 0 0 1 3
t 2 4 3 4 0 0 0 0 0 0 3 1
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/04/30//oligo-analysis_2026-04-30.004020_GkgavH_pssm_count_matrices_logo_m6.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/04/30//oligo-analysis_2026-04-30.004020_GkgavH_pssm_count_matrices_logo_m6_rc.png
;
a 0 1 3 3 0 0 0 0 0 3 1 1
c 0 0 0 0 3 0 0 0 0 0 0 0
g 2 1 0 0 0 3 3 3 3 0 1 1
t 1 1 0 0 0 0 0 0 0 0 1 1
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/04/30//oligo-analysis_2026-04-30.004020_GkgavH_pssm_count_matrices_logo_m7.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/04/30//oligo-analysis_2026-04-30.004020_GkgavH_pssm_count_matrices_logo_m7_rc.png
;
a 0 1 6 0 0 0 0 7 0 0 0 0
c 3 2 1 0 2 0 0 0 0 7 1 2
g 1 2 0 0 1 0 7 0 7 0 4 2
t 3 2 0 7 4 7 0 0 0 0 2 3
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/04/30//oligo-analysis_2026-04-30.004020_GkgavH_pssm_count_matrices_logo_m8.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/04/30//oligo-analysis_2026-04-30.004020_GkgavH_pssm_count_matrices_logo_m8_rc.png
;
a 0 2 0 0 0 0 0 6 2 2
c 0 1 6 6 0 0 0 0 3 1
g 2 2 0 0 0 0 6 0 0 1
t 4 1 0 0 6 6 0 0 1 2
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/04/30//oligo-analysis_2026-04-30.004020_GkgavH_pssm_count_matrices_logo_m9.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/04/30//oligo-analysis_2026-04-30.004020_GkgavH_pssm_count_matrices_logo_m9_rc.png
;
; Host name rsat
; Job started 2026-04-30.004024
; Job done 2026-04-30.004027
; Seconds 0.18
; user 0.18
; system 0.08
; cuser 2.2
; csystem 0.35