; convert-matrix -v 1 -i $RSAT/public_html/tmp/www-data/2026/04/30/oligo-analysis_2026-04-30.111533_Jw8Wrp_pssm_count_matrices.tf -from tf -to tab -return counts -return logo -logo_format png -logo_file $RSAT/public_html/tmp/www-data/2026/04/30/oligo-analysis_2026-04-30.111533_Jw8Wrp_pssm_count_matrices_logo -o $RSAT/public_html/tmp/www-data/2026/04/30/oligo-analysis_2026-04-30.111533_Jw8Wrp_pssm_count_matrices_links.txt
; Input files
; input /var/www/html/rsat/public_html/tmp/www-data/2026/04/30/oligo-analysis_2026-04-30.111533_Jw8Wrp_pssm_count_matrices.tf
; Input format tf
; Output files
; output /var/www/html/rsat/public_html/tmp/www-data/2026/04/30/oligo-analysis_2026-04-30.111533_Jw8Wrp_pssm_count_matrices_links.txt
; Output format tab
; pseudo-weight 1
a 3 1 0 1 0 0 0 0 6 6 3 1
c 1 1 0 3 0 0 7 0 0 0 1 1
g 0 0 0 0 0 0 0 0 0 0 0 1
t 3 5 7 3 7 7 0 7 1 1 3 4
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/04/30//oligo-analysis_2026-04-30.111533_Jw8Wrp_pssm_count_matrices_logo_m1.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/04/30//oligo-analysis_2026-04-30.111533_Jw8Wrp_pssm_count_matrices_logo_m1_rc.png
;
a 1 1 0 0 0 3 0 0 0 4 4 3 3
c 0 0 0 0 0 0 0 4 0 0 0 0 0
g 1 1 0 0 0 1 0 0 4 0 0 0 0
t 2 2 4 4 4 0 4 0 0 0 0 1 1
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/04/30//oligo-analysis_2026-04-30.111533_Jw8Wrp_pssm_count_matrices_logo_m2.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/04/30//oligo-analysis_2026-04-30.111533_Jw8Wrp_pssm_count_matrices_logo_m2_rc.png
;
a 0 2 0 2 2 0 0 0 2 0 0 1 2
c 0 0 0 0 0 0 0 0 0 2 2 1 0
g 0 0 0 0 0 2 0 2 0 0 0 0 0
t 2 0 2 0 0 0 2 0 0 0 0 0 0
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/04/30//oligo-analysis_2026-04-30.111533_Jw8Wrp_pssm_count_matrices_logo_m3.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/04/30//oligo-analysis_2026-04-30.111533_Jw8Wrp_pssm_count_matrices_logo_m3_rc.png
;
a 6 4 11 1 0 0 0 0 1 0 7 3
c 4 1 0 0 0 0 0 0 9 0 1 1
g 0 2 0 0 0 0 1 0 0 7 2 1
t 1 4 0 10 11 11 10 11 1 4 1 6
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/04/30//oligo-analysis_2026-04-30.111533_Jw8Wrp_pssm_count_matrices_logo_m4.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/04/30//oligo-analysis_2026-04-30.111533_Jw8Wrp_pssm_count_matrices_logo_m4_rc.png
;
a 1 4 2 7 0 8 1 0 0 8 6 6
c 1 1 0 0 0 0 0 0 0 0 0 0
g 0 1 6 1 0 0 0 0 0 0 1 1
t 6 2 0 0 8 0 7 8 8 0 1 1
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/04/30//oligo-analysis_2026-04-30.111533_Jw8Wrp_pssm_count_matrices_logo_m5.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/04/30//oligo-analysis_2026-04-30.111533_Jw8Wrp_pssm_count_matrices_logo_m5_rc.png
;
a 3 3 0 4 4 4 0 4 0 3
c 0 0 0 0 0 0 0 0 1 0
g 0 1 4 0 0 0 4 0 1 1
t 1 0 0 0 0 0 0 0 2 0
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/04/30//oligo-analysis_2026-04-30.111533_Jw8Wrp_pssm_count_matrices_logo_m6.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/04/30//oligo-analysis_2026-04-30.111533_Jw8Wrp_pssm_count_matrices_logo_m6_rc.png
;
a 2 1 0 3 0 3 0 3 2 1
c 0 0 0 0 0 0 0 0 0 1
g 1 1 3 0 0 0 3 0 1 1
t 0 1 0 0 3 0 0 0 0 0
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/04/30//oligo-analysis_2026-04-30.111533_Jw8Wrp_pssm_count_matrices_logo_m7.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/04/30//oligo-analysis_2026-04-30.111533_Jw8Wrp_pssm_count_matrices_logo_m7_rc.png
;
a 7 13 4 13 0 2 0 15 15 15 2 7
c 0 0 1 1 0 0 0 0 0 0 0 2
g 5 1 0 0 0 0 0 0 0 0 3 2
t 3 1 10 1 15 13 15 0 0 0 10 4
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/04/30//oligo-analysis_2026-04-30.111533_Jw8Wrp_pssm_count_matrices_logo_m8.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/04/30//oligo-analysis_2026-04-30.111533_Jw8Wrp_pssm_count_matrices_logo_m8_rc.png
;
a 3 4 5 5 0 6 5 6 0 6 1 5
c 0 0 0 0 0 0 0 0 1 0 1 0
g 2 2 0 1 6 0 0 0 5 0 2 1
t 1 0 1 0 0 0 1 0 0 0 2 0
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/04/30//oligo-analysis_2026-04-30.111533_Jw8Wrp_pssm_count_matrices_logo_m9.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/04/30//oligo-analysis_2026-04-30.111533_Jw8Wrp_pssm_count_matrices_logo_m9_rc.png
;
; Host name rsat
; Job started 2026-04-30.111539
; Job done 2026-04-30.111542
; Seconds 0.16
; user 0.16
; system 0.08
; cuser 2.27
; csystem 0.37