; dna-pattern -v 1 -pl $RSAT/public_html/tmp/www-data/2026/05/02/dna-pattern_2026-05-02.145708_FE8UbO.pat -i $RSAT/public_html/tmp/www-data/2026/05/02/tmp_sequence_2026-05-02.145708_GGB3pJ.fasta -format fasta -return sites -origin -0 -N 4 -return limits -noov -2str -subst 0 ; Citation: van Helden et al. (2000). Yeast 16(2), 177-187. ; Input file $RSAT/public_html/tmp/www-data/2026/05/02/tmp_sequence_2026-05-02.145708_GGB3pJ.fasta ; Input format fasta ; Pattern file $RSAT/public_html/tmp/www-data/2026/05/02/dna-pattern_2026-05-02.145708_FE8UbO.pat ; Search method regexp ; Threshold 0 ; Allowed substitutions 0 ; Return fields ; sites ; limits ; Patterns ; seq id score ; TGTCTC TGTCTC 1 ; ; Matching positions ; PatID Strand Pattern SeqID Start End matching_seq Score START_END DR - MtrunR108HiC004507 -2000 -1 - 0.00 START_END DR - MtrunR108HiC004504 -2000 -1 - 0.00 TGTCTC D TGTCTC MtrunR108HiC004504 -145 -140 gccaTGTCTCatca 1.00 START_END DR - MtrunR108HiC004509 -2000 -1 - 0.00 TGTCTC R TGTCTC MtrunR108HiC004509 -378 -373 gtggTGTCTCtctt 1.00 START_END DR - MtrunR108HiC004508 -2000 -1 - 0.00 START_END DR - MtrunR108HiC002104 -2000 -1 - 0.00 TGTCTC R TGTCTC MtrunR108HiC002104 -1689 -1684 tttgTGTCTCttct 1.00 START_END DR - MtrunR108HiC000548 -2000 -1 - 0.00 TGTCTC R TGTCTC MtrunR108HiC000548 -1648 -1643 ataaTGTCTCgaat 1.00 START_END DR - MtrunR108HiC000640 -2000 -1 - 0.00 START_END DR - MtrunR108HiC003829 -2000 -1 - 0.00 TGTCTC R TGTCTC MtrunR108HiC003829 -538 -533 gttcTGTCTCtact 1.00 START_END DR - MtrunR108HiC003814 -2000 -1 - 0.00 TGTCTC D TGTCTC MtrunR108HiC003814 -558 -553 taagTGTCTCtcta 1.00 TGTCTC R TGTCTC MtrunR108HiC003814 -1916 -1911 agaaTGTCTCtccg 1.00 START_END DR - MtrunR108HiC003916 -2000 -1 - 0.00 START_END DR - MtrunR108HiC007624 -2000 -1 - 0.00 TGTCTC D TGTCTC MtrunR108HiC007624 -588 -583 tgttTGTCTCttga 1.00 START_END DR - MtrunR108HiC006674 -2000 -1 - 0.00 START_END DR - MtrunR108HiC007961 -2000 -1 - 0.00 TGTCTC D TGTCTC MtrunR108HiC007961 -908 -903 tataTGTCTCctaa 1.00 TGTCTC D TGTCTC MtrunR108HiC007961 -846 -841 aaatTGTCTCatac 1.00 TGTCTC R TGTCTC MtrunR108HiC007961 -192 -187 aataTGTCTCtttc 1.00 START_END DR - MtrunR108HiC007962 -2000 -1 - 0.00 TGTCTC R TGTCTC MtrunR108HiC007962 -184 -179 aataTGTCTCtttc 1.00 START_END DR - MtrunR108HiC007965 -2000 -1 - 0.00 TGTCTC R TGTCTC MtrunR108HiC007965 -184 -179 aataTGTCTCtttc 1.00 START_END DR - MtrunR108HiC007966 -2000 -1 - 0.00 TGTCTC D TGTCTC MtrunR108HiC007966 -1577 -1572 actgTGTCTCaatt 1.00 TGTCTC D TGTCTC MtrunR108HiC007966 -116 -111 tggaTGTCTCtggt 1.00 TGTCTC R TGTCTC MtrunR108HiC007966 -1665 -1660 ggacTGTCTCcagg 1.00 START_END DR - MtrunR108HiC007967 -2000 -1 - 0.00 TGTCTC D TGTCTC MtrunR108HiC007967 -805 -800 aaatTGTCTCacat 1.00 TGTCTC R TGTCTC MtrunR108HiC007967 -1359 -1354 caaaTGTCTCttca 1.00 START_END DR - MtrunR108HiC006816 -2000 -1 - 0.00 START_END DR - MtrunR108HiC010000 -2000 -1 - 0.00 TGTCTC D TGTCTC MtrunR108HiC010000 -484 -479 ccaaTGTCTCtata 1.00 TGTCTC D TGTCTC MtrunR108HiC010000 -238 -233 aataTGTCTCaatt 1.00 TGTCTC R TGTCTC MtrunR108HiC010000 -55 -50 aacaTGTCTCacat 1.00 START_END DR - MtrunR108HiC006963 -2000 -1 - 0.00 TGTCTC D TGTCTC MtrunR108HiC006963 -622 -617 tctaTGTCTCcgtc 1.00 START_END DR - MtrunR108HiC006946 -2000 -1 - 0.00 TGTCTC D TGTCTC MtrunR108HiC006946 -1885 -1880 cttaTGTCTCtgac 1.00 TGTCTC D TGTCTC MtrunR108HiC006946 -46 -41 ttctTGTCTCcttc 1.00 START_END DR - MtrunR108HiC009982 -2000 -1 - 0.00 TGTCTC R TGTCTC MtrunR108HiC009982 -1415 -1410 gtacTGTCTCaact 1.00 START_END DR - MtrunR108HiC007425 -2000 -1 - 0.00 TGTCTC R TGTCTC MtrunR108HiC007425 -1106 -1101 tcaaTGTCTCattt 1.00 START_END DR - MtrunR108HiC007426 -2000 -1 - 0.00 START_END DR - MtrunR108HiC011607 -2000 -1 - 0.00 TGTCTC D TGTCTC MtrunR108HiC011607 -1559 -1554 gagaTGTCTCcacc 1.00 TGTCTC D TGTCTC MtrunR108HiC011607 -1407 -1402 tctcTGTCTCatta 1.00 TGTCTC R TGTCTC MtrunR108HiC011607 -1742 -1737 tttaTGTCTCttgt 1.00 TGTCTC R TGTCTC MtrunR108HiC011607 -1127 -1122 aaatTGTCTCtaaa 1.00 START_END DR - MtrunR108HiC011011 -2000 -1 - 0.00 START_END DR - MtrunR108HiC013656 -2000 -1 - 0.00 START_END DR - MtrunR108HiC013655 -2000 -1 - 0.00 START_END DR - MtrunR108HiC011199 -2000 -1 - 0.00 START_END DR - MtrunR108HiC011198 -2000 -1 - 0.00 TGTCTC R TGTCTC MtrunR108HiC011198 -1499 -1494 taatTGTCTCttta 1.00 START_END DR - MtrunR108HiC014351 -2000 -1 - 0.00 TGTCTC D TGTCTC MtrunR108HiC014351 -1700 -1695 tgttTGTCTCtatt 1.00 TGTCTC R TGTCTC MtrunR108HiC014351 -1056 -1051 aagtTGTCTCaaag 1.00 START_END DR - MtrunR108HiC011350 -2000 -1 - 0.00 TGTCTC D TGTCTC MtrunR108HiC011350 -1584 -1579 gatgTGTCTCattt 1.00 START_END DR - MtrunR108HiC011347 -2000 -1 - 0.00 TGTCTC R TGTCTC MtrunR108HiC011347 -1945 -1940 catcTGTCTCttat 1.00 START_END DR - MtrunR108HiC012061 -2000 -1 - 0.00 TGTCTC D TGTCTC MtrunR108HiC012061 -1482 -1477 atttTGTCTCacaa 1.00 START_END DR - MtrunR108HiC019616 -2000 -1 - 0.00 START_END DR - MtrunR108HiC020584 -2000 -1 - 0.00 START_END DR - MtrunR108HiC017077 -2000 -1 - 0.00 START_END DR - MtrunR108HiC017069 -2000 -1 - 0.00 TGTCTC D TGTCTC MtrunR108HiC017069 -470 -465 acacTGTCTCtttc 1.00 START_END DR - MtrunR108HiC016836 -2000 -1 - 0.00 START_END DR - MtrunR108HiC018882 -2000 -1 - 0.00 START_END DR - MtrunR108HiC018904 -2000 -1 - 0.00 TGTCTC R TGTCTC MtrunR108HiC018904 -328 -323 aataTGTCTCaatt 1.00 TGTCTC R TGTCTC MtrunR108HiC018904 -302 -297 aataTGTCTCaatt 1.00 START_END DR - MtrunR108HiC025510 -2000 -1 - 0.00 START_END DR - MtrunR108HiC023799 -2000 -1 - 0.00 START_END DR - MtrunR108HiC023116 -2000 -1 - 0.00 START_END DR - MtrunR108HiC022692 -2000 -1 - 0.00 TGTCTC R TGTCTC MtrunR108HiC022692 -580 -575 aaagTGTCTCcaag 1.00 START_END DR - MtrunR108HiC025053 -2000 -1 - 0.00 TGTCTC D TGTCTC MtrunR108HiC025053 -1860 -1855 aataTGTCTCtttt 1.00 START_END DR - MtrunR108HiC022716 -2000 -1 - 0.00 START_END DR - MtrunR108HiC025708 -2000 -1 - 0.00 TGTCTC D TGTCTC MtrunR108HiC025708 -1483 -1478 taagTGTCTCtttt 1.00 START_END DR - MtrunR108HiC026594 -2000 -1 - 0.00 TGTCTC R TGTCTC MtrunR108HiC026594 -1376 -1371 atgaTGTCTCacca 1.00 START_END DR - MtrunR108HiC029868 -2000 -1 - 0.00 START_END DR - MtrunR108HiC033192 -2000 -1 - 0.00 TGTCTC D TGTCTC MtrunR108HiC033192 -461 -456 tcacTGTCTCcact 1.00 TGTCTC D TGTCTC MtrunR108HiC033192 -64 -59 ttctTGTCTCttga 1.00 TGTCTC R TGTCTC MtrunR108HiC033192 -1773 -1768 atttTGTCTCgaaa 1.00 START_END DR - MtrunR108HiC033161 -2000 -1 - 0.00 TGTCTC D TGTCTC MtrunR108HiC033161 -1666 -1661 aatgTGTCTCtcat 1.00 TGTCTC R TGTCTC MtrunR108HiC033161 -1034 -1029 atttTGTCTCtcat 1.00 START_END DR - MtrunR108HiC030090 -2000 -1 - 0.00 START_END DR - MtrunR108HiC031387 -2000 -1 - 0.00 TGTCTC R TGTCTC MtrunR108HiC031387 -1263 -1258 tctcTGTCTCtccc 1.00 TGTCTC R TGTCTC MtrunR108HiC031387 -200 -195 tgttTGTCTCattt 1.00 START_END DR - MtrunR108HiC030036 -2000 -1 - 0.00 TGTCTC D TGTCTC MtrunR108HiC030036 -1433 -1428 aaacTGTCTCttat 1.00 START_END DR - MtrunR108HiC033370 -2000 -1 - 0.00 START_END DR - MtrunR108HiC032159 -2000 -1 - 0.00 TGTCTC D TGTCTC MtrunR108HiC032159 -725 -720 actcTGTCTCatca 1.00 TGTCTC D TGTCTC MtrunR108HiC032159 -422 -417 ttagTGTCTCtaca 1.00 TGTCTC D TGTCTC MtrunR108HiC032159 -35 -30 gcagTGTCTCtgtg 1.00 START_END DR - MtrunR108HiC032124 -2000 -1 - 0.00 TGTCTC D TGTCTC MtrunR108HiC032124 -1048 -1043 actaTGTCTCcgaa 1.00 START_END DR - MtrunR108HiC032125 -2000 -1 - 0.00 START_END DR - MtrunR108HiC031915 -2000 -1 - 0.00 TGTCTC R TGTCTC MtrunR108HiC031915 -1584 -1579 tcctTGTCTCtccg 1.00 TGTCTC R TGTCTC MtrunR108HiC031915 -1435 -1430 ccatTGTCTCgccc 1.00 START_END DR - MtrunR108HiC036326 -2000 -1 - 0.00 TGTCTC D TGTCTC MtrunR108HiC036326 -354 -349 caacTGTCTCttag 1.00 START_END DR - MtrunR108HiC036327 -2000 -1 - 0.00 TGTCTC D TGTCTC MtrunR108HiC036327 -1482 -1477 tcttTGTCTCattg 1.00 TGTCTC R TGTCTC MtrunR108HiC036327 -1302 -1297 gtggTGTCTCcttc 1.00 START_END DR - MtrunR108HiC038239 -2000 -1 - 0.00 TGTCTC D TGTCTC MtrunR108HiC038239 -122 -117 tttcTGTCTCtcct 1.00 START_END DR - MtrunR108HiC038227 -2000 -1 - 0.00 START_END DR - MtrunR108HiC034083 -2000 -1 - 0.00 START_END DR - MtrunR108HiC034082 -2000 -1 - 0.00 START_END DR - MtrunR108HiC038443 -2000 -1 - 0.00 START_END DR - MtrunR108HiC034081 -2000 -1 - 0.00 TGTCTC D TGTCTC MtrunR108HiC034081 -1454 -1449 ggtcTGTCTCtata 1.00 TGTCTC D TGTCTC MtrunR108HiC034081 -1284 -1279 gttcTGTCTCtatt 1.00 START_END DR - MtrunR108HiC034080 -2000 -1 - 0.00 START_END DR - MtrunR108HiC034079 -2000 -1 - 0.00 START_END DR - MtrunR108HiC034063 -2000 -1 - 0.00 START_END DR - MtrunR108HiC034003 -2000 -1 - 0.00 TGTCTC D TGTCTC MtrunR108HiC034003 -556 -551 taatTGTCTCtttt 1.00 START_END DR - MtrunR108HiC034886 -2000 -1 - 0.00 TGTCTC D TGTCTC MtrunR108HiC034886 -1594 -1589 tgttTGTCTCtctt 1.00 START_END DR - MtrunR108HiC034953 -2000 -1 - 0.00 TGTCTC D TGTCTC MtrunR108HiC034953 -1764 -1759 tcttTGTCTCtatt 1.00 START_END DR - MtrunR108HiC034933 -2000 -1 - 0.00 TGTCTC D TGTCTC MtrunR108HiC034933 -1504 -1499 aaatTGTCTCatat 1.00 START_END DR - MtrunR108HiC036874 -2000 -1 - 0.00 TGTCTC R TGTCTC MtrunR108HiC036874 -653 -648 caatTGTCTCattt 1.00 START_END DR - MtrunR108HiC025613 -2000 -1 - 0.00 TGTCTC R TGTCTC MtrunR108HiC025613 -1947 -1942 catcTGTCTCttat 1.00 START_END DR - MtrunR108HiC005483 -2000 -1 - 0.00 TGTCTC D TGTCTC MtrunR108HiC005483 -75 -70 tgcaTGTCTCttaa 1.00 ; Host name rsat ; Job started 2026-05-02.145708 ; Job done 2026-05-02.145708 ; Seconds 0.14 ; user 0.14 ; system 0 ; cuser 0 ; csystem 0