; oligo-analysis -v 1 -sort -i $RSAT/public_html/tmp/www-data/2026/05/02/tmp_sequence_2026-05-02.224300_aU9YyQ.fasta.purged -format fasta -lth occ_sig 0 -uth rank 50 -return occ,proba,rank -1str -noov -quick_if_possible -seqtype dna -bg upstream-noorf -org Homo_sapiens_GRCh38 -pseudo 0.01 -l 5 -o $RSAT/public_html/tmp/www-data/2026/05/02/oligo-analysis_2026-05-02.224300_t2l33k_5nt.tab
; Citation: van Helden et al. (1998). J Mol Biol 281(5), 827-42.
; Program version 1.169
; Quick counting mode
; Detection of over-represented words (right-tail test)
; Oligomer length 5
; Input file $RSAT/public_html/tmp/www-data/2026/05/02/tmp_sequence_2026-05-02.224300_aU9YyQ.fasta.purged
; Input format fasta
; Output file $RSAT/public_html/tmp/www-data/2026/05/02/oligo-analysis_2026-05-02.224300_t2l33k_5nt.tab
; Discard overlapping matches
; Counted on a single strand
; Background model upstream-noorf
; Organism Homo_sapiens_GRCh38
; Background estimation method Frequency file
; Expected frequency file $RSAT/public_html/data/genomes/Homo_sapiens_GRCh38/oligo-frequencies/5nt_upstream-noorf_Homo_sapiens_GRCh38-noov-1str.freq
; Pseudo-frequency 0.01
; Pseudo-frequency per oligo 9.765625e-06
; Sequence type DNA
; Nb of sequences 3205
; Sum of sequence lengths 99355
; discarded residues NA (quick mode) (other letters than ACGT)
; discarded occurrences NA (quick mode) (contain discarded residues)
; nb possible positions NA (quick mode)
; total oligo occurrences 86535
; total overlapping occurrences 1267
; total non overlapping occ 85268
; alphabet size 4
; nb possible oligomers 1024
; oligomers tested for significance 1024
;
; column headers
; 1 seq oligomer sequence
; 2 id oligomer identifier
; 3 exp_freq expected relative frequency
; 4 occ observed occurrences
; 5 exp_occ expected occurrences
; 6 occ_P occurrence probability (binomial)
; 7 occ_E E-value for occurrences (binomial)
; 8 occ_sig occurrence significance (binomial)
; 9 rank rank
; 10 ovl_occ number of overlapping occurrences (discarded from the count)
; 11 forbocc forbidden positions (to avoid self-overlap)
#seq id exp_freq occ exp_occ occ_P occ_E occ_sig rank ovl_occ forbocc
ataaa ataaa 0.0023470463624 1581 203.10 0 0e+00 350.00 1 63 6324
taaat taaat 0.0018926656999 906 163.78 0 0e+00 350.00 2 70 3624
aataa aataa 0.0021857950064 1488 189.15 0 0e+00 350.00 3 96 5952
taaaa taaaa 0.0029603745843 1060 256.18 8e-309 8e-306 305.09 4 0 4240
aaata aaata 0.0028562069859 1021 247.16 6e-297 6e-294 293.19 5 60 4084
aaaat aaaat 0.0036170789746 1048 313.00 1e-234 1e-231 230.91 6 0 4192
aaatt aaatt 0.0024144828054 738 208.94 8e-178 9e-175 174.07 7 0 2952
ttaaa ttaaa 0.0023505812501 718 203.41 7e-173 7e-170 169.14 8 0 2872
taata taata 0.0013318280412 519 115.25 1e-166 1e-163 162.88 9 8 2076
attaa attaa 0.0015142095306 469 131.03 1e-115 2e-112 111.82 10 4 1876
taaag taaag 0.0012743555180 387 110.28 2.7e-93 2.8e-90 89.55 11 0 1548
aaatg aaatg 0.0021082362575 507 182.44 1.2e-86 1.2e-83 82.91 12 0 2028
tttaa tttaa 0.0023042677412 535 199.40 3.9e-86 4.0e-83 82.40 13 0 2140
ttaat ttaat 0.0014854984669 406 128.55 9.6e-85 9.8e-82 81.01 14 4 1624
taaac taaac 0.0009661795406 317 83.61 1.7e-84 1.7e-81 80.77 15 0 1268
caata caata 0.0009918596722 307 85.83 3.2e-76 3.3e-73 72.48 16 0 1228
tgttt tgttt 0.0020296120028 433 175.63 2.7e-60 2.7e-57 56.56 17 5 1732
aaact aaact 0.0015919482636 347 137.76 1.2e-50 1.3e-47 46.90 18 0 1388
ttatt ttatt 0.0020888123734 414 180.76 5e-50 5.1e-47 46.29 19 22 1656
aaaaa aaaaa 0.0034794199347 586 301.09 3.9e-48 4.0e-45 44.40 20 353 2344
aattt aattt 0.0023726041047 445 205.31 1e-47 1.0e-44 43.99 21 0 1780
aatgt aatgt 0.0014486665203 318 125.36 3.8e-47 3.9e-44 43.41 22 0 1272
ttgtt ttgtt 0.0016087155825 338 139.21 3.9e-46 4.0e-43 42.40 23 11 1352
tttgt tttgt 0.0020470488625 395 177.14 3.1e-45 3.1e-42 41.50 24 1 1580
tttta tttta 0.0028347528810 480 245.31 2.6e-40 2.7e-37 36.57 25 0 1920
aatta aatta 0.0017625875902 343 152.53 3.1e-40 3.2e-37 36.49 26 1 1372
tgtgt tgtgt 0.0014337062418 293 124.07 3.5e-38 3.6e-35 34.44 27 39 1172
tgaat tgaat 0.0013355789099 279 115.57 5.4e-38 5.5e-35 34.26 28 8 1116
aattg aattg 0.0010813333686 242 93.57 1.4e-37 1.5e-34 33.83 29 0 968
aattc aattc 0.0012225848911 261 105.80 4e-37 4.1e-34 33.39 30 0 1044
aatat aatat 0.0018735441890 348 162.13 6.3e-37 6.4e-34 33.19 31 0 1392
tttat tttat 0.0022276737071 393 192.77 7.5e-37 7.7e-34 33.11 32 3 1572
tcatt tcatt 0.0015051383319 298 130.25 1.9e-36 1.9e-33 32.71 33 3 1192
attgt attgt 0.0011040977577 239 95.54 5.2e-35 5.3e-32 31.28 34 0 956
gaata gaata 0.0010536374151 230 91.18 2.8e-34 2.9e-31 30.53 35 0 920
ttgaa ttgaa 0.0015634531807 295 135.29 1.1e-32 1.2e-29 28.93 36 0 1180
tatta tatta 0.0013135848527 259 113.67 1.2e-31 1.2e-28 27.92 37 14 1036
attta attta 0.0018621691937 330 161.14 1.5e-31 1.5e-28 27.83 38 5 1320
tattt tattt 0.0027467838517 433 237.69 3.7e-30 3.8e-27 26.42 39 6 1732
ataat ataat 0.0015299977360 282 132.40 9.2e-30 9.4e-27 26.03 40 5 1128
tcttt tcttt 0.0021928503832 365 189.76 9.4e-30 9.6e-27 26.02 41 4 1460
aactt aactt 0.0012102091844 239 104.73 1.9e-29 2.0e-26 25.71 42 0 956
tgaaa tgaaa 0.0020457601764 344 177.03 6.9e-29 7.1e-26 25.15 43 0 1376
aaatc aaatc 0.0013079189532 250 113.18 9.8e-29 1.0e-25 25.00 44 0 1000
ttctt ttctt 0.0021429515910 354 185.44 2.4e-28 2.4e-25 24.61 45 12 1416
attct attct 0.0016283770457 288 140.91 1.2e-27 1.2e-24 23.91 46 0 1152
atttg atttg 0.0015030649151 269 130.07 1.2e-26 1.2e-23 22.92 47 0 1076
ttgta ttgta 0.0012143200213 230 105.08 4.4e-26 4.6e-23 22.34 48 0 920
tttct tttct 0.0026951572122 411 233.23 4.5e-26 4.6e-23 22.34 49 6 1644
atttt atttt 0.0034755394774 498 300.76 1.4e-25 1.4e-22 21.84 50 0 1992
; Host name rsat
; Job started 2026-05-02.224302
; Job done 2026-05-02.224302
; Seconds 0.24
; user 0.24
; system 0.03
; cuser 0.11
; csystem 0.01