; convert-matrix  -v 1 -i $RSAT/public_html/tmp/www-data/2026/05/02/oligo-analysis_2026-05-02.224300_t2l33k_pssm_count_matrices.tf -from tf -to tab -return counts -return logo -logo_format png -logo_file $RSAT/public_html/tmp/www-data/2026/05/02/oligo-analysis_2026-05-02.224300_t2l33k_pssm_count_matrices_logo -o $RSAT/public_html/tmp/www-data/2026/05/02/oligo-analysis_2026-05-02.224300_t2l33k_pssm_count_matrices_links.txt
; Input files
;	input	/var/www/html/rsat/public_html/tmp/www-data/2026/05/02/oligo-analysis_2026-05-02.224300_t2l33k_pssm_count_matrices.tf
; Input format        	tf
; Output files
;	output	/var/www/html/rsat/public_html/tmp/www-data/2026/05/02/oligo-analysis_2026-05-02.224300_t2l33k_pssm_count_matrices_links.txt
; Output format       	tab
; pseudo-weight       	1
a	29	23	40	44	40	40	19	18	16	35	16	16	6	42	50	42	7	42	38	12	12	35	21	17	17	21
c	5	5	5	4	3	3	12	7	3	6	4	1	0	1	2	1	4	2	3	6	5	2	10	9	10	9
g	6	8	0	3	1	1	3	4	5	4	1	3	4	4	0	1	3	3	3	8	7	6	7	4	9	3
t	13	17	8	2	9	9	19	24	29	8	32	33	43	6	1	9	39	6	9	27	29	10	15	23	17	20
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/05/02//oligo-analysis_2026-05-02.224300_t2l33k_pssm_count_matrices_logo_m1.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/05/02//oligo-analysis_2026-05-02.224300_t2l33k_pssm_count_matrices_logo_m1_rc.png
;
a	482	474	884	988	1166	1134	90	1128	1158	1139	435	397	399
c	128	160	82	70	5	13	28	10	11	13	152	132	161
g	136	165	88	42	14	16	27	34	11	5	172	167	192
t	462	409	154	108	23	45	1063	36	28	51	449	512	456
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/05/02//oligo-analysis_2026-05-02.224300_t2l33k_pssm_count_matrices_logo_m2.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/05/02//oligo-analysis_2026-05-02.224300_t2l33k_pssm_count_matrices_logo_m2_rc.png
;
a	182	232	209	69	416	463	452	42	408	433	214	62	90	322	349	169	166
c	65	44	71	24	25	10	3	14	18	18	27	15	25	38	36	66	77
g	77	47	44	30	17	10	9	26	22	6	15	25	41	43	24	44	72
t	169	170	169	370	35	10	29	411	45	36	237	391	337	90	84	214	178
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/05/02//oligo-analysis_2026-05-02.224300_t2l33k_pssm_count_matrices_logo_m3.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/05/02//oligo-analysis_2026-05-02.224300_t2l33k_pssm_count_matrices_logo_m3_rc.png
;
; Host name	rsat
; Job started	2026-05-02.224306
; Job done	2026-05-02.224308
; Seconds	0.18
;	user	0.18
;	system	0.05
;	cuser	0.94
;	csystem	0.15