rsync -ruptl /var/www/html/rsat/perl-scripts/lib/js /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1


rsync -ruptl /var/www/html/rsat/public_html/images/program_icons/matrix-clustering_icons /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_query_matrices.meme -from meme -to tf -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_data/a_peak_motif_cluster_input_motifs_processed_1.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_data/a_peak_motif_cluster_input_motifs_processed_1.tf -from tf -to transfac -prefix_id a_peak_motif_cluster -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_data/a_peak_motif_cluster_input_motifs_processed.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_third_matrices.transfac -from transfac -to tf -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_data/oct4_homer_input_motifs_processed_1.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_data/oct4_homer_input_motifs_processed_1.tf -from tf -to transfac -prefix_id oct4_homer -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_data/oct4_homer_input_motifs_processed.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_second_matrices. -from transfac -to tf -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_data/oct4_meme-chip_input_motifs_processed_1.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_data/oct4_meme-chip_input_motifs_processed_1.tf -from tf -to transfac -prefix_id oct4_meme-chip -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_data/oct4_meme-chip_input_motifs_processed.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_data/a_peak_motif_cluster_input_motifs_processed.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_data/oct4_homer_input_motifs_processed.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_data/oct4_meme-chip_input_motifs_processed.tf  > /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_data/input_motifs_processed.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_data/input_motifs_processed.tf -split -from tf -to tf -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_data/motif


 cat /var/www/html/rsat/R-scripts/matrix-clustering.R | /usr/bin/R --slave --no-save --no-restore --no-environ --args " infile = '/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_tables/pairwise_compa.tab'; hclust.method = 'average'; description.file = '/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_tables/pairwise_compa_matrix_descriptions.tab'; distance.table = '/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_tables/distance_table.tab'; alignment.file = '/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_tables/alignment_table.tab'; verbosity = 0; metric = 'Ncor'; heatmap.color.palette = 'YlOrRd'; heatmap.color.classes = '9'; export.newick = 0; radial.only = 0; draw.heatmap = 1; draw.consensus = 0; pos.hclust.in.heatmap = 'column'; lthsp = 'cor_0.6_Ncor_0.4_'; out.prefix = '/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering'; "


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_tables/cluster_2_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_data/cluster_2_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_tables/cluster_1_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_data/cluster_1_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_tables/cluster_3_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_data/cluster_3_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_tables/cluster_4_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_data/cluster_4_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_tables/cluster_5_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_data/cluster_5_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_tables/cluster_6_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_data/cluster_6_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_tables/cluster_7_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_data/cluster_7_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_tables/cluster_8_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_data/cluster_8_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_tables/cluster_9_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_data/cluster_9_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_tables/cluster_10_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_data/cluster_10_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_tables/cluster_11_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_data/cluster_11_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_tables/cluster_12_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_data/cluster_12_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_tables/cluster_13_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_data/cluster_13_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_tables/cluster_14_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_data/cluster_14_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_tables/cluster_15_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_data/cluster_15_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_tables/cluster_16_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_data/cluster_16_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_tables/cluster_17_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_data/cluster_17_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_tables/cluster_18_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_data/cluster_18_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_tables/cluster_19_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_data/cluster_19_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_tables/cluster_20_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_data/cluster_20_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_tables/cluster_21_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_data/cluster_21_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_tables/cluster_22_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_data/cluster_22_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_tables/cluster_23_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_data/cluster_23_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_tables/cluster_24_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_data/cluster_24_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_tables/cluster_25_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_data/cluster_25_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_tables/cluster_26_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_data/cluster_26_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_tables/cluster_27_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_data/cluster_27_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_tables/cluster_28_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_data/cluster_28_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_tables/cluster_29_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_data/cluster_29_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_tables/cluster_30_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_data/cluster_30_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_tables/cluster_31_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_data/cluster_31_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_tables/cluster_32_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_data/cluster_32_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_tables/cluster_33_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_data/cluster_33_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_tables/cluster_34_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_data/cluster_34_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_tables/cluster_35_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_data/cluster_35_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_tables/cluster_36_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_data/cluster_36_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_tables/cluster_37_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_data/cluster_37_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_tables/cluster_38_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_data/cluster_38_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_tables/cluster_39_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_data/cluster_39_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_tables/cluster_40_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_data/cluster_40_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_tables/cluster_41_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_data/cluster_41_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_tables/cluster_42_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_data/cluster_42_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_tables/cluster_43_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_data/cluster_43_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_tables/cluster_44_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_data/cluster_44_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_tables/cluster_45_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_data/cluster_45_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_tables/cluster_46_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_data/cluster_46_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_tables/cluster_47_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_data/cluster_47_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_tables/cluster_48_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_data/cluster_48_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_tables/cluster_49_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_data/cluster_49_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_tables/cluster_50_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_data/cluster_50_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_tables/cluster_51_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_data/cluster_51_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_tables/cluster_52_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_data/cluster_52_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_tables/cluster_53_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_data/cluster_53_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_tables/cluster_54_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_data/cluster_54_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_tables/cluster_55_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_data/cluster_55_transfac_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m14_MA0126.2_ovo_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m88_MA0239.2_prd_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_1/cluster_1_node_1_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m123_MA0529.3_BEAF-32_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m135_MA1456.2_Dref_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_10/merged_consensuses/node_1/cluster_10_node_1_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m218_MA2254.1_lz_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m91_MA0242.1_Bgb::run_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_11/merged_consensuses/node_1/cluster_11_node_1_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_1/cluster_1_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_1 -name cluster_1 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_1/cluster_1_node_1_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m130_MA0536.2_pnr_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m123_MA0529.3_BEAF-32_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m135_MA1456.2_Dref_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_10/merged_consensuses/node_2/cluster_10_node_2_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m133_MA0917.1_gcm2_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m148_MA1840.2_gcm_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_11/merged_consensuses/node_2/cluster_11_node_2_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m283_MA2319.1_run_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m218_MA2254.1_lz_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m91_MA0242.1_Bgb::run_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_11/merged_consensuses/node_3/cluster_11_node_3_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_10/merged_consensuses/node_1/cluster_10_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_10 -name cluster_10 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_10/merged_consensuses/node_1/cluster_10_node_1_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m203_MA2239.1_gsb_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m130_MA0536.2_pnr_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m123_MA0529.3_BEAF-32_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m135_MA1456.2_Dref_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_10/merged_consensuses/node_3/cluster_10_node_3_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_11/merged_consensuses/node_1/cluster_11_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_11 -name cluster_11 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_11/merged_consensuses/node_1/cluster_11_node_1_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_11/merged_consensuses/node_2/cluster_11_node_2_cat.tf -v 0 -in_format tf -out_format tf -id cluster_11 -name cluster_11 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_11/merged_consensuses/node_2/cluster_11_node_2_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_10/merged_consensuses/node_2/cluster_10_node_2_cat.tf -v 0 -in_format tf -out_format tf -id cluster_10 -name cluster_10 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_10/merged_consensuses/node_2/cluster_10_node_2_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_11/merged_consensuses/node_3/cluster_11_node_3_cat.tf -v 0 -in_format tf -out_format tf -id cluster_11 -name cluster_11 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_11/merged_consensuses/node_3/cluster_11_node_3_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_10/merged_consensuses/node_3/cluster_10_node_3_cat.tf -v 0 -in_format tf -out_format tf -id cluster_10 -name cluster_10 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_10/merged_consensuses/node_3/cluster_10_node_3_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_11/merged_consensuses/node_2/cluster_11_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054608_0GunA0


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_11/merged_consensuses/node_1/cluster_11_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054608_cNH3kL


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_10/merged_consensuses/node_2/cluster_10_nb_motifs_3.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054608_QTPkPp


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_1/cluster_1_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054608_NXiWya


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_10/merged_consensuses/node_1/cluster_10_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054608_XqL7tl


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_11/merged_consensuses/node_3/cluster_11_nb_motifs_3.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054608_GB1dum


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_10/merged_consensuses/node_3/cluster_10_nb_motifs_4.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054608_CbqtkA


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_11/merged_consensuses/node_2/cluster_11_node_2_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_10/merged_consensuses/node_2/cluster_10_node_2_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_10/merged_consensuses/node_1/cluster_10_node_1_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_11/merged_consensuses/node_1/cluster_11_node_1_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_1/cluster_1_node_1_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_11/merged_consensuses/node_3/cluster_11_node_3_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_10/merged_consensuses/node_3/cluster_10_node_3_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m68_MA0218.1_ct_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m14_MA0126.2_ovo_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m88_MA0239.2_prd_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_2/cluster_1_node_2_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m195_MA2231.1_Ets98B_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m133_MA0917.1_gcm2_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m148_MA1840.2_gcm_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_11/merged_consensuses/node_4/cluster_11_node_4_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_2/cluster_1_node_2_cat.tf -v 0 -in_format tf -out_format tf -id cluster_1 -name cluster_1 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_2/cluster_1_node_2_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m283_MA2319.1_run_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m218_MA2254.1_lz_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m91_MA0242.1_Bgb::run_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m195_MA2231.1_Ets98B_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m133_MA0917.1_gcm2_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m148_MA1840.2_gcm_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_11/merged_consensuses/node_5/cluster_11_node_5_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_11/merged_consensuses/node_4/cluster_11_node_4_cat.tf -v 0 -in_format tf -out_format tf -id cluster_11 -name cluster_11 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_11/merged_consensuses/node_4/cluster_11_node_4_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_11/merged_consensuses/node_5/cluster_11_node_5_cat.tf -v 0 -in_format tf -out_format tf -id cluster_11 -name cluster_11 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_11/merged_consensuses/node_5/cluster_11_node_5_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_11/merged_consensuses/node_5/cluster_11_nb_motifs_6.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054609_Ze83pR


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_2/cluster_1_nb_motifs_3.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054609_0Sc9nc


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_11/merged_consensuses/node_4/cluster_11_nb_motifs_3.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054609_A7sCxi


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_2/cluster_1_node_2_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_11/merged_consensuses/node_5/cluster_11_node_5_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_11/merged_consensuses/node_4/cluster_11_node_4_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m190_MA2226.1_ERR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_meme-chip_m6_MEME_ChIP_6_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_12/merged_consensuses/node_1/cluster_12_node_1_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m216_MA2252.1_lmd_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m249_MA2285.1_sug_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_13/merged_consensuses/node_1/cluster_13_node_1_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m115_MA0451.2_kni_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m215_MA2251.1_knrl_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_12/merged_consensuses/node_3/cluster_12_node_3_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m208_MA2244.1_Hr39_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m190_MA2226.1_ERR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_meme-chip_m6_MEME_ChIP_6_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_12/merged_consensuses/node_2/cluster_12_node_2_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m118_MA0456.1_opa_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m216_MA2252.1_lmd_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m249_MA2285.1_sug_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_13/merged_consensuses/node_2/cluster_13_node_2_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m171_MA2207.1_ci_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m118_MA0456.1_opa_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m216_MA2252.1_lmd_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m249_MA2285.1_sug_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_13/merged_consensuses/node_3/cluster_13_node_3_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_13/merged_consensuses/node_1/cluster_13_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_13 -name cluster_13 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_13/merged_consensuses/node_1/cluster_13_node_1_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_12/merged_consensuses/node_3/cluster_12_node_3_cat.tf -v 0 -in_format tf -out_format tf -id cluster_12 -name cluster_12 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_12/merged_consensuses/node_3/cluster_12_node_3_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_12/merged_consensuses/node_1/cluster_12_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_12 -name cluster_12 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_12/merged_consensuses/node_1/cluster_12_node_1_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_13/merged_consensuses/node_2/cluster_13_node_2_cat.tf -v 0 -in_format tf -out_format tf -id cluster_13 -name cluster_13 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_13/merged_consensuses/node_2/cluster_13_node_2_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_12/merged_consensuses/node_2/cluster_12_node_2_cat.tf -v 0 -in_format tf -out_format tf -id cluster_12 -name cluster_12 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_12/merged_consensuses/node_2/cluster_12_node_2_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_13/merged_consensuses/node_3/cluster_13_node_3_cat.tf -v 0 -in_format tf -out_format tf -id cluster_13 -name cluster_13 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_13/merged_consensuses/node_3/cluster_13_node_3_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_12/merged_consensuses/node_3/cluster_12_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054611_xHkGfr


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_13/merged_consensuses/node_1/cluster_13_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054611_8v5Crt


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_12/merged_consensuses/node_1/cluster_12_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054611_qhpm7e


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_13/merged_consensuses/node_2/cluster_13_nb_motifs_3.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054611_MguHuv


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_12/merged_consensuses/node_2/cluster_12_nb_motifs_3.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054611_9Cmxup


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_13/merged_consensuses/node_3/cluster_13_nb_motifs_4.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054611_NJTUpQ


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_12/merged_consensuses/node_1/cluster_12_node_1_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_12/merged_consensuses/node_3/cluster_12_node_3_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_13/merged_consensuses/node_1/cluster_13_node_1_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_13/merged_consensuses/node_3/cluster_13_node_3_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_13/merged_consensuses/node_2/cluster_13_node_2_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_12/merged_consensuses/node_2/cluster_12_node_2_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m207_MA2243.1_Hr38_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m209_MA2245.1_Hr78_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_12/merged_consensuses/node_4/cluster_12_node_4_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m107_MA0443.2_btd_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m243_MA2279.1_Sp1_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_14/merged_consensuses/node_1/cluster_14_node_1_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m244_MA2280.1_Spps_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m262_MA2298.1_CG3065_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_14/merged_consensuses/node_2/cluster_14_node_2_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m187_MA2223.1_EcR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m250_MA2286.1_svp_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_12/merged_consensuses/node_6/cluster_12_node_6_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m176_MA2212.1_dar1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m244_MA2280.1_Spps_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m262_MA2298.1_CG3065_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_14/merged_consensuses/node_3/cluster_14_node_3_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_14/merged_consensuses/node_1/cluster_14_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_14 -name cluster_14 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_14/merged_consensuses/node_1/cluster_14_node_1_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_12/merged_consensuses/node_4/cluster_12_node_4_cat.tf -v 0 -in_format tf -out_format tf -id cluster_12 -name cluster_12 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_12/merged_consensuses/node_4/cluster_12_node_4_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_14/merged_consensuses/node_2/cluster_14_node_2_cat.tf -v 0 -in_format tf -out_format tf -id cluster_14 -name cluster_14 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_14/merged_consensuses/node_2/cluster_14_node_2_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m208_MA2244.1_Hr39_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m190_MA2226.1_ERR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_meme-chip_m6_MEME_ChIP_6_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m207_MA2243.1_Hr38_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m209_MA2245.1_Hr78_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_12/merged_consensuses/node_5/cluster_12_node_5_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_12/merged_consensuses/node_6/cluster_12_node_6_cat.tf -v 0 -in_format tf -out_format tf -id cluster_12 -name cluster_12 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_12/merged_consensuses/node_6/cluster_12_node_6_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_14/merged_consensuses/node_3/cluster_14_node_3_cat.tf -v 0 -in_format tf -out_format tf -id cluster_14 -name cluster_14 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_14/merged_consensuses/node_3/cluster_14_node_3_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_12/merged_consensuses/node_5/cluster_12_node_5_cat.tf -v 0 -in_format tf -out_format tf -id cluster_12 -name cluster_12 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_12/merged_consensuses/node_5/cluster_12_node_5_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_14/merged_consensuses/node_3/cluster_14_nb_motifs_3.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054612_LaUh0g


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_12/merged_consensuses/node_5/cluster_12_nb_motifs_5.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054612_5GVq5l


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_12/merged_consensuses/node_6/cluster_12_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054612_LyKU4X


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_14/merged_consensuses/node_2/cluster_14_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054612_EMW9Wk


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_14/merged_consensuses/node_1/cluster_14_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054612_iM0fim


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_12/merged_consensuses/node_4/cluster_12_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054612_IPn8cu


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_12/merged_consensuses/node_5/cluster_12_node_5_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_14/merged_consensuses/node_1/cluster_14_node_1_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_12/merged_consensuses/node_6/cluster_12_node_6_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_14/merged_consensuses/node_2/cluster_14_node_2_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_14/merged_consensuses/node_3/cluster_14_node_3_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_12/merged_consensuses/node_4/cluster_12_node_4_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m217_MA2253.1_luna_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_meme-chip_m2_MEME_ChIP_2_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_14/merged_consensuses/node_4/cluster_14_node_4_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m240_MA2276.1_Sox21a_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m241_MA2277.1_Sox21b_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_15/merged_consensuses/node_1/cluster_15_node_1_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m121_MA0459.1_tll_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m182_MA2218.1_dsf_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_12/merged_consensuses/node_7/cluster_12_node_7_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_14/merged_consensuses/node_4/cluster_14_node_4_cat.tf -v 0 -in_format tf -out_format tf -id cluster_14 -name cluster_14 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_14/merged_consensuses/node_4/cluster_14_node_4_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_15/merged_consensuses/node_1/cluster_15_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_15 -name cluster_15 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_15/merged_consensuses/node_1/cluster_15_node_1_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m188_MA2224.1_Eip75B_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m115_MA0451.2_kni_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m215_MA2251.1_knrl_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_12/merged_consensuses/node_9/cluster_12_node_9_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m107_MA0443.2_btd_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m243_MA2279.1_Sp1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m176_MA2212.1_dar1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m244_MA2280.1_Spps_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m262_MA2298.1_CG3065_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_14/merged_consensuses/node_5/cluster_14_node_5_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m217_MA2253.1_luna_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_meme-chip_m2_MEME_ChIP_2_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m107_MA0443.2_btd_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m243_MA2279.1_Sp1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m176_MA2212.1_dar1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m244_MA2280.1_Spps_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m262_MA2298.1_CG3065_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_14/merged_consensuses/node_6/cluster_14_node_6_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_12/merged_consensuses/node_7/cluster_12_node_7_cat.tf -v 0 -in_format tf -out_format tf -id cluster_12 -name cluster_12 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_12/merged_consensuses/node_7/cluster_12_node_7_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m208_MA2244.1_Hr39_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m190_MA2226.1_ERR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_meme-chip_m6_MEME_ChIP_6_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m207_MA2243.1_Hr38_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m209_MA2245.1_Hr78_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m187_MA2223.1_EcR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m250_MA2286.1_svp_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_12/merged_consensuses/node_8/cluster_12_node_8_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_12/merged_consensuses/node_9/cluster_12_node_9_cat.tf -v 0 -in_format tf -out_format tf -id cluster_12 -name cluster_12 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_12/merged_consensuses/node_9/cluster_12_node_9_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_14/merged_consensuses/node_5/cluster_14_node_5_cat.tf -v 0 -in_format tf -out_format tf -id cluster_14 -name cluster_14 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_14/merged_consensuses/node_5/cluster_14_node_5_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_14/merged_consensuses/node_6/cluster_14_node_6_cat.tf -v 0 -in_format tf -out_format tf -id cluster_14 -name cluster_14 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_14/merged_consensuses/node_6/cluster_14_node_6_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_12/merged_consensuses/node_8/cluster_12_node_8_cat.tf -v 0 -in_format tf -out_format tf -id cluster_12 -name cluster_12 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_12/merged_consensuses/node_8/cluster_12_node_8_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_14/merged_consensuses/node_4/cluster_14_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054613_PSupVO


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_12/merged_consensuses/node_7/cluster_12_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054613_e5ppHe


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_14/merged_consensuses/node_6/cluster_14_nb_motifs_7.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054613_ymDTkq


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_12/merged_consensuses/node_8/cluster_12_nb_motifs_7.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054613_y9vZ48


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_15/merged_consensuses/node_1/cluster_15_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054613_SqAm14


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_12/merged_consensuses/node_9/cluster_12_nb_motifs_3.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054613_oRK5J1


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_14/merged_consensuses/node_5/cluster_14_nb_motifs_5.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054613_RH6Kn8


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_14/merged_consensuses/node_4/cluster_14_node_4_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_14/merged_consensuses/node_6/cluster_14_node_6_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_12/merged_consensuses/node_7/cluster_12_node_7_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_12/merged_consensuses/node_8/cluster_12_node_8_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_15/merged_consensuses/node_1/cluster_15_node_1_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_12/merged_consensuses/node_9/cluster_12_node_9_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_14/merged_consensuses/node_5/cluster_14_node_5_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m242_MA2278.1_SoxN_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m240_MA2276.1_Sox21a_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m241_MA2277.1_Sox21b_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_15/merged_consensuses/node_2/cluster_15_node_2_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_meme-chip_m8_MEME_ChIP_8_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_meme-chip_m9_MEME_ChIP_9_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_14/merged_consensuses/node_7/cluster_14_node_7_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_15/merged_consensuses/node_2/cluster_15_node_2_cat.tf -v 0 -in_format tf -out_format tf -id cluster_15 -name cluster_15 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_15/merged_consensuses/node_2/cluster_15_node_2_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_14/merged_consensuses/node_7/cluster_14_node_7_cat.tf -v 0 -in_format tf -out_format tf -id cluster_14 -name cluster_14 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_14/merged_consensuses/node_7/cluster_14_node_7_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m275_MA2311.1_ftz-f1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m208_MA2244.1_Hr39_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m190_MA2226.1_ERR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_meme-chip_m6_MEME_ChIP_6_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m207_MA2243.1_Hr38_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m209_MA2245.1_Hr78_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m187_MA2223.1_EcR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m250_MA2286.1_svp_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_12/merged_consensuses/node_10/cluster_12_node_10_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_homer_m5_homer_5_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m217_MA2253.1_luna_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_meme-chip_m2_MEME_ChIP_2_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m107_MA0443.2_btd_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m243_MA2279.1_Sp1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m176_MA2212.1_dar1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m244_MA2280.1_Spps_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m262_MA2298.1_CG3065_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_14/merged_consensuses/node_8/cluster_14_node_8_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m121_MA0459.1_tll_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m182_MA2218.1_dsf_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m275_MA2311.1_ftz-f1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m208_MA2244.1_Hr39_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m190_MA2226.1_ERR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_meme-chip_m6_MEME_ChIP_6_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m207_MA2243.1_Hr38_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m209_MA2245.1_Hr78_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m187_MA2223.1_EcR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m250_MA2286.1_svp_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_12/merged_consensuses/node_11/cluster_12_node_11_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m206_MA2242.1_Hnf4_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m121_MA0459.1_tll_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m182_MA2218.1_dsf_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m275_MA2311.1_ftz-f1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m208_MA2244.1_Hr39_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m190_MA2226.1_ERR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_meme-chip_m6_MEME_ChIP_6_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m207_MA2243.1_Hr38_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m209_MA2245.1_Hr78_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m187_MA2223.1_EcR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m250_MA2286.1_svp_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_12/merged_consensuses/node_12/cluster_12_node_12_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_14/merged_consensuses/node_8/cluster_14_node_8_cat.tf -v 0 -in_format tf -out_format tf -id cluster_14 -name cluster_14 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_14/merged_consensuses/node_8/cluster_14_node_8_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_12/merged_consensuses/node_10/cluster_12_node_10_cat.tf -v 0 -in_format tf -out_format tf -id cluster_12 -name cluster_12 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_12/merged_consensuses/node_10/cluster_12_node_10_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_12/merged_consensuses/node_11/cluster_12_node_11_cat.tf -v 0 -in_format tf -out_format tf -id cluster_12 -name cluster_12 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_12/merged_consensuses/node_11/cluster_12_node_11_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_12/merged_consensuses/node_12/cluster_12_node_12_cat.tf -v 0 -in_format tf -out_format tf -id cluster_12 -name cluster_12 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_12/merged_consensuses/node_12/cluster_12_node_12_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_14/merged_consensuses/node_7/cluster_14_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054614_tzvgQH


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_15/merged_consensuses/node_2/cluster_15_nb_motifs_3.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054614_ls2BXm


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_14/merged_consensuses/node_8/cluster_14_nb_motifs_8.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054614_tGT0SH


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_12/merged_consensuses/node_12/cluster_12_nb_motifs_11.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054614_Pl8wd0


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_12/merged_consensuses/node_11/cluster_12_nb_motifs_10.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054614_fEJZzt


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_12/merged_consensuses/node_10/cluster_12_nb_motifs_8.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054614_e2R6kb


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_14/merged_consensuses/node_7/cluster_14_node_7_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_15/merged_consensuses/node_2/cluster_15_node_2_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_14/merged_consensuses/node_8/cluster_14_node_8_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_12/merged_consensuses/node_11/cluster_12_node_11_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_12/merged_consensuses/node_10/cluster_12_node_10_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_12/merged_consensuses/node_12/cluster_12_node_12_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m280_MA2316.1_l_3_neo38_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_meme-chip_m8_MEME_ChIP_8_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_meme-chip_m9_MEME_ChIP_9_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_14/merged_consensuses/node_10/cluster_14_node_10_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m165_MA2201.1_Bteb2_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_homer_m5_homer_5_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m217_MA2253.1_luna_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_meme-chip_m2_MEME_ChIP_2_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m107_MA0443.2_btd_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m243_MA2279.1_Sp1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m176_MA2212.1_dar1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m244_MA2280.1_Spps_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m262_MA2298.1_CG3065_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_14/merged_consensuses/node_9/cluster_14_node_9_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_14/merged_consensuses/node_10/cluster_14_node_10_cat.tf -v 0 -in_format tf -out_format tf -id cluster_14 -name cluster_14 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_14/merged_consensuses/node_10/cluster_14_node_10_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_14/merged_consensuses/node_9/cluster_14_node_9_cat.tf -v 0 -in_format tf -out_format tf -id cluster_14 -name cluster_14 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_14/merged_consensuses/node_9/cluster_14_node_9_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_14/merged_consensuses/node_9/cluster_14_nb_motifs_9.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054615_xEOQpc


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_14/merged_consensuses/node_10/cluster_14_nb_motifs_3.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054615_UG6S8J


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_14/merged_consensuses/node_10/cluster_14_node_10_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_14/merged_consensuses/node_9/cluster_14_node_9_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m120_MA0458.2_slp1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m196_MA2232.1_fd59A_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_16/merged_consensuses/node_1/cluster_16_node_1_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_homer_m16_homer_16_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_homer_m18_homer_18_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_16/merged_consensuses/node_2/cluster_16_node_2_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m175_MA2211.1_croc_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m120_MA0458.2_slp1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m196_MA2232.1_fd59A_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_16/merged_consensuses/node_3/cluster_16_node_3_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_16/merged_consensuses/node_1/cluster_16_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_16 -name cluster_16 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_16/merged_consensuses/node_1/cluster_16_node_1_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_16/merged_consensuses/node_2/cluster_16_node_2_cat.tf -v 0 -in_format tf -out_format tf -id cluster_16 -name cluster_16 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_16/merged_consensuses/node_2/cluster_16_node_2_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_16/merged_consensuses/node_3/cluster_16_node_3_cat.tf -v 0 -in_format tf -out_format tf -id cluster_16 -name cluster_16 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_16/merged_consensuses/node_3/cluster_16_node_3_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m165_MA2201.1_Bteb2_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_homer_m5_homer_5_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m217_MA2253.1_luna_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_meme-chip_m2_MEME_ChIP_2_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m107_MA0443.2_btd_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m243_MA2279.1_Sp1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m176_MA2212.1_dar1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m244_MA2280.1_Spps_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m262_MA2298.1_CG3065_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m280_MA2316.1_l_3_neo38_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_meme-chip_m8_MEME_ChIP_8_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_meme-chip_m9_MEME_ChIP_9_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_14/merged_consensuses/node_11/cluster_14_node_11_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m188_MA2224.1_Eip75B_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m115_MA0451.2_kni_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m215_MA2251.1_knrl_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m206_MA2242.1_Hnf4_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m121_MA0459.1_tll_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m182_MA2218.1_dsf_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m275_MA2311.1_ftz-f1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m208_MA2244.1_Hr39_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m190_MA2226.1_ERR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_meme-chip_m6_MEME_ChIP_6_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m207_MA2243.1_Hr38_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m209_MA2245.1_Hr78_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m187_MA2223.1_EcR_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m250_MA2286.1_svp_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_12/merged_consensuses/node_13/cluster_12_node_13_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_14/merged_consensuses/node_11/cluster_14_node_11_cat.tf -v 0 -in_format tf -out_format tf -id cluster_14 -name cluster_14 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_14/merged_consensuses/node_11/cluster_14_node_11_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_12/merged_consensuses/node_13/cluster_12_node_13_cat.tf -v 0 -in_format tf -out_format tf -id cluster_12 -name cluster_12 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_12/merged_consensuses/node_13/cluster_12_node_13_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_16/merged_consensuses/node_2/cluster_16_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054616_Phby7L


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_16/merged_consensuses/node_1/cluster_16_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054616_9KSTKD


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_16/merged_consensuses/node_3/cluster_16_nb_motifs_3.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054616_4Pt3na


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_12/merged_consensuses/node_13/cluster_12_nb_motifs_14.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054616_QwWjmV


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_14/merged_consensuses/node_11/cluster_14_nb_motifs_12.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054616_gOlxOY


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_16/merged_consensuses/node_3/cluster_16_node_3_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_16/merged_consensuses/node_1/cluster_16_node_1_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_16/merged_consensuses/node_2/cluster_16_node_2_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_12/merged_consensuses/node_13/cluster_12_node_13_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_14/merged_consensuses/node_11/cluster_14_node_11_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m161_MA2197.1_bin_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m236_MA2272.1_slp2_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_16/merged_consensuses/node_4/cluster_16_node_4_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m170_MA2206.1_CHES-1-like_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m201_MA2237.1_FoxP_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_16/merged_consensuses/node_5/cluster_16_node_5_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m199_MA2235.1_FoxL1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m161_MA2197.1_bin_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m236_MA2272.1_slp2_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_16/merged_consensuses/node_6/cluster_16_node_6_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_16/merged_consensuses/node_4/cluster_16_node_4_cat.tf -v 0 -in_format tf -out_format tf -id cluster_16 -name cluster_16 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_16/merged_consensuses/node_4/cluster_16_node_4_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_16/merged_consensuses/node_5/cluster_16_node_5_cat.tf -v 0 -in_format tf -out_format tf -id cluster_16 -name cluster_16 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_16/merged_consensuses/node_5/cluster_16_node_5_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_16/merged_consensuses/node_6/cluster_16_node_6_cat.tf -v 0 -in_format tf -out_format tf -id cluster_16 -name cluster_16 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_16/merged_consensuses/node_6/cluster_16_node_6_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_16/merged_consensuses/node_6/cluster_16_nb_motifs_3.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054617_y23j5V


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_16/merged_consensuses/node_5/cluster_16_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054617_l2ZV60


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_16/merged_consensuses/node_4/cluster_16_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054617_SXaWvx


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_16/merged_consensuses/node_6/cluster_16_node_6_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_16/merged_consensuses/node_5/cluster_16_node_5_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_16/merged_consensuses/node_4/cluster_16_node_4_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m110_MA0446.1_fkh_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m175_MA2211.1_croc_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m120_MA0458.2_slp1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m196_MA2232.1_fd59A_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_16/merged_consensuses/node_7/cluster_16_node_7_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m170_MA2206.1_CHES-1-like_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m201_MA2237.1_FoxP_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m199_MA2235.1_FoxL1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m161_MA2197.1_bin_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m236_MA2272.1_slp2_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_16/merged_consensuses/node_8/cluster_16_node_8_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m200_MA2236.1_foxo_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m110_MA0446.1_fkh_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m175_MA2211.1_croc_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m120_MA0458.2_slp1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m196_MA2232.1_fd59A_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_16/merged_consensuses/node_9/cluster_16_node_9_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_16/merged_consensuses/node_7/cluster_16_node_7_cat.tf -v 0 -in_format tf -out_format tf -id cluster_16 -name cluster_16 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_16/merged_consensuses/node_7/cluster_16_node_7_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_16/merged_consensuses/node_8/cluster_16_node_8_cat.tf -v 0 -in_format tf -out_format tf -id cluster_16 -name cluster_16 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_16/merged_consensuses/node_8/cluster_16_node_8_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_16/merged_consensuses/node_9/cluster_16_node_9_cat.tf -v 0 -in_format tf -out_format tf -id cluster_16 -name cluster_16 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_16/merged_consensuses/node_9/cluster_16_node_9_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_16/merged_consensuses/node_9/cluster_16_nb_motifs_5.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054618_4LB7st


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_16/merged_consensuses/node_7/cluster_16_nb_motifs_4.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054618_SMCVqC


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_16/merged_consensuses/node_8/cluster_16_nb_motifs_5.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054618_QUonO5


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_16/merged_consensuses/node_9/cluster_16_node_9_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_16/merged_consensuses/node_8/cluster_16_node_8_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_16/merged_consensuses/node_7/cluster_16_node_7_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m140_MA1461.2_sv_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m227_MA2263.1_Poxm_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_17/merged_consensuses/node_1/cluster_17_node_1_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m150_MA2107.1_cg_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_homer_m17_homer_17_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_18/merged_consensuses/node_1/cluster_18_node_1_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_17/merged_consensuses/node_1/cluster_17_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_17 -name cluster_17 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_17/merged_consensuses/node_1/cluster_17_node_1_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m214_MA2250.1_klu_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m150_MA2107.1_cg_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_homer_m17_homer_17_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_18/merged_consensuses/node_2/cluster_18_node_2_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_18/merged_consensuses/node_1/cluster_18_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_18 -name cluster_18 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_18/merged_consensuses/node_1/cluster_18_node_1_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_homer_m7_homer_7_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m214_MA2250.1_klu_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m150_MA2107.1_cg_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_homer_m17_homer_17_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_18/merged_consensuses/node_3/cluster_18_node_3_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m10_MA0049.1_hb_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_homer_m16_homer_16_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_homer_m18_homer_18_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_16/merged_consensuses/node_10/cluster_16_node_10_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_18/merged_consensuses/node_2/cluster_18_node_2_cat.tf -v 0 -in_format tf -out_format tf -id cluster_18 -name cluster_18 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_18/merged_consensuses/node_2/cluster_18_node_2_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_18/merged_consensuses/node_3/cluster_18_node_3_cat.tf -v 0 -in_format tf -out_format tf -id cluster_18 -name cluster_18 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_18/merged_consensuses/node_3/cluster_18_node_3_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m4_MA0013.1_br_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m170_MA2206.1_CHES-1-like_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m201_MA2237.1_FoxP_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m199_MA2235.1_FoxL1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m161_MA2197.1_bin_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m236_MA2272.1_slp2_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_16/merged_consensuses/node_11/cluster_16_node_11_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_16/merged_consensuses/node_10/cluster_16_node_10_cat.tf -v 0 -in_format tf -out_format tf -id cluster_16 -name cluster_16 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_16/merged_consensuses/node_10/cluster_16_node_10_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_16/merged_consensuses/node_11/cluster_16_node_11_cat.tf -v 0 -in_format tf -out_format tf -id cluster_16 -name cluster_16 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_16/merged_consensuses/node_11/cluster_16_node_11_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_17/merged_consensuses/node_1/cluster_17_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054619_nyAMfo


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_18/merged_consensuses/node_1/cluster_18_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054619_R8myMC


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_16/merged_consensuses/node_10/cluster_16_nb_motifs_3.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054619_Hj03IF


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_18/merged_consensuses/node_2/cluster_18_nb_motifs_3.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054619_sgykMG


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_18/merged_consensuses/node_3/cluster_18_nb_motifs_4.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054619_Qwa5nV


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_16/merged_consensuses/node_11/cluster_16_nb_motifs_6.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054619_EWe5TM


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_17/merged_consensuses/node_1/cluster_17_node_1_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_16/merged_consensuses/node_10/cluster_16_node_10_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_18/merged_consensuses/node_1/cluster_18_node_1_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_18/merged_consensuses/node_3/cluster_18_node_3_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_18/merged_consensuses/node_2/cluster_18_node_2_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_16/merged_consensuses/node_11/cluster_16_node_11_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m253_MA2289.1_toy_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m140_MA1461.2_sv_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m227_MA2263.1_Poxm_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_17/merged_consensuses/node_2/cluster_17_node_2_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_17/merged_consensuses/node_2/cluster_17_node_2_cat.tf -v 0 -in_format tf -out_format tf -id cluster_17 -name cluster_17 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_17/merged_consensuses/node_2/cluster_17_node_2_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m151_MA2108.1_sqz_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m231_MA2267.1_rib_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_16/merged_consensuses/node_14/cluster_16_node_14_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m266_MA2302.1_Crg-1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m200_MA2236.1_foxo_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m110_MA0446.1_fkh_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m175_MA2211.1_croc_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m120_MA0458.2_slp1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m196_MA2232.1_fd59A_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_16/merged_consensuses/node_12/cluster_16_node_12_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_16/merged_consensuses/node_14/cluster_16_node_14_cat.tf -v 0 -in_format tf -out_format tf -id cluster_16 -name cluster_16 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_16/merged_consensuses/node_14/cluster_16_node_14_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_16/merged_consensuses/node_12/cluster_16_node_12_cat.tf -v 0 -in_format tf -out_format tf -id cluster_16 -name cluster_16 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_16/merged_consensuses/node_12/cluster_16_node_12_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m4_MA0013.1_br_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m170_MA2206.1_CHES-1-like_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m201_MA2237.1_FoxP_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m199_MA2235.1_FoxL1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m161_MA2197.1_bin_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m236_MA2272.1_slp2_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m266_MA2302.1_Crg-1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m200_MA2236.1_foxo_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m110_MA0446.1_fkh_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m175_MA2211.1_croc_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m120_MA0458.2_slp1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m196_MA2232.1_fd59A_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_16/merged_consensuses/node_13/cluster_16_node_13_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_16/merged_consensuses/node_13/cluster_16_node_13_cat.tf -v 0 -in_format tf -out_format tf -id cluster_16 -name cluster_16 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_16/merged_consensuses/node_13/cluster_16_node_13_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_17/merged_consensuses/node_2/cluster_17_nb_motifs_3.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054620_jNL6tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_16/merged_consensuses/node_12/cluster_16_nb_motifs_6.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054620_KTnOth


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_16/merged_consensuses/node_13/cluster_16_nb_motifs_12.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054620_kU3PZX


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_16/merged_consensuses/node_14/cluster_16_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054620_tlrAHI


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_16/merged_consensuses/node_13/cluster_16_node_13_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_17/merged_consensuses/node_2/cluster_17_node_2_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_16/merged_consensuses/node_14/cluster_16_node_14_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_16/merged_consensuses/node_12/cluster_16_node_12_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m1_MA0010.2_br_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m10_MA0049.1_hb_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_homer_m16_homer_16_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_homer_m18_homer_18_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_16/merged_consensuses/node_15/cluster_16_node_15_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_16/merged_consensuses/node_15/cluster_16_node_15_cat.tf -v 0 -in_format tf -out_format tf -id cluster_16 -name cluster_16 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_16/merged_consensuses/node_15/cluster_16_node_15_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_16/merged_consensuses/node_15/cluster_16_nb_motifs_4.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054621_q53DNE


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_16/merged_consensuses/node_15/cluster_16_node_15_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m210_MA2246.1_Jra_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m212_MA2248.1_kay_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_19/merged_consensuses/node_1/cluster_19_node_1_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_19/merged_consensuses/node_1/cluster_19_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_19 -name cluster_19 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_19/merged_consensuses/node_1/cluster_19_node_1_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m4_MA0013.1_br_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m170_MA2206.1_CHES-1-like_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m201_MA2237.1_FoxP_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m199_MA2235.1_FoxL1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m161_MA2197.1_bin_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m236_MA2272.1_slp2_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m266_MA2302.1_Crg-1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m200_MA2236.1_foxo_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m110_MA0446.1_fkh_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m175_MA2211.1_croc_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m120_MA0458.2_slp1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m196_MA2232.1_fd59A_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m1_MA0010.2_br_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m10_MA0049.1_hb_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_homer_m16_homer_16_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_homer_m18_homer_18_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_16/merged_consensuses/node_16/cluster_16_node_16_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m151_MA2108.1_sqz_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m231_MA2267.1_rib_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m4_MA0013.1_br_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m170_MA2206.1_CHES-1-like_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m201_MA2237.1_FoxP_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m199_MA2235.1_FoxL1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m161_MA2197.1_bin_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m236_MA2272.1_slp2_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m266_MA2302.1_Crg-1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m200_MA2236.1_foxo_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m110_MA0446.1_fkh_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m175_MA2211.1_croc_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m120_MA0458.2_slp1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m196_MA2232.1_fd59A_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m1_MA0010.2_br_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m10_MA0049.1_hb_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_homer_m16_homer_16_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_homer_m18_homer_18_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_16/merged_consensuses/node_17/cluster_16_node_17_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_16/merged_consensuses/node_16/cluster_16_node_16_cat.tf -v 0 -in_format tf -out_format tf -id cluster_16 -name cluster_16 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_16/merged_consensuses/node_16/cluster_16_node_16_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_16/merged_consensuses/node_17/cluster_16_node_17_cat.tf -v 0 -in_format tf -out_format tf -id cluster_16 -name cluster_16 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_16/merged_consensuses/node_17/cluster_16_node_17_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_19/merged_consensuses/node_1/cluster_19_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054622_UWkGmQ


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_16/merged_consensuses/node_17/cluster_16_nb_motifs_18.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054622_LqzgAy


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_16/merged_consensuses/node_16/cluster_16_nb_motifs_16.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054622_Z9e8YO


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_19/merged_consensuses/node_1/cluster_19_node_1_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_16/merged_consensuses/node_16/cluster_16_node_16_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_16/merged_consensuses/node_17/cluster_16_node_17_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m179_MA2215.1_dm_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m219_MA2255.1_Max_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_1/cluster_2_node_1_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m183_MA2219.1_E_spl_m3-HLH_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m185_MA2221.1_E_spl_mdelta-HLH_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_2/cluster_2_node_2_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m245_MA2281.1_SREBP_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m269_MA2305.1_cyc_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_3/cluster_2_node_3_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m162_MA2198.1_Blimp-1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m213_MA2249.1_ken_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_20/merged_consensuses/node_1/cluster_20_node_1_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_1/cluster_2_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_2 -name cluster_2 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_1/cluster_2_node_1_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_2/cluster_2_node_2_cat.tf -v 0 -in_format tf -out_format tf -id cluster_2 -name cluster_2 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_2/cluster_2_node_2_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_3/cluster_2_node_3_cat.tf -v 0 -in_format tf -out_format tf -id cluster_2 -name cluster_2 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_3/cluster_2_node_3_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_20/merged_consensuses/node_1/cluster_20_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_20 -name cluster_20 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_20/merged_consensuses/node_1/cluster_20_node_1_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_2/cluster_2_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054624_R5IAx7


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_1/cluster_2_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054624_ZOIrjT


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_20/merged_consensuses/node_1/cluster_20_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054624_D4Iiaq


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_3/cluster_2_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054625_I21HaT


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_2/cluster_2_node_2_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_1/cluster_2_node_1_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_3/cluster_2_node_3_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_20/merged_consensuses/node_1/cluster_20_node_1_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m265_MA2301.1_clk_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m268_MA2304.1_cwo_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_4/cluster_2_node_4_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m181_MA2217.1_dpn_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m204_MA2240.1_Hey_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_5/cluster_2_node_5_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m254_MA2290.1_Usf_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m245_MA2281.1_SREBP_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m269_MA2305.1_cyc_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_6/cluster_2_node_6_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_5/cluster_2_node_5_cat.tf -v 0 -in_format tf -out_format tf -id cluster_2 -name cluster_2 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_5/cluster_2_node_5_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_4/cluster_2_node_4_cat.tf -v 0 -in_format tf -out_format tf -id cluster_2 -name cluster_2 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_4/cluster_2_node_4_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_6/cluster_2_node_6_cat.tf -v 0 -in_format tf -out_format tf -id cluster_2 -name cluster_2 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_6/cluster_2_node_6_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_5/cluster_2_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054625_i4FOP7


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_4/cluster_2_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054625_RgliYH


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_6/cluster_2_nb_motifs_3.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054626_skhusL


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_5/cluster_2_node_5_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_6/cluster_2_node_6_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_4/cluster_2_node_4_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m273_MA2309.1_ewg_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_homer_m19_homer_19_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_21/merged_consensuses/node_1/cluster_21_node_1_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_21/merged_consensuses/node_1/cluster_21_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_21 -name cluster_21 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_21/merged_consensuses/node_1/cluster_21_node_1_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m186_MA2222.1_E_spl_mgamma-HLH_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m183_MA2219.1_E_spl_m3-HLH_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m185_MA2221.1_E_spl_mdelta-HLH_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_7/cluster_2_node_7_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m169_MA2205.1_CG7928_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m286_MA2322.1_ZIPIC_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_22/merged_consensuses/node_1/cluster_22_node_1_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_homer_m4_homer_4_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m273_MA2309.1_ewg_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_homer_m19_homer_19_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_21/merged_consensuses/node_2/cluster_21_node_2_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m221_MA2257.1_Mitf_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m181_MA2217.1_dpn_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m204_MA2240.1_Hey_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_9/cluster_2_node_9_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m222_MA2258.1_Mnt_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m179_MA2215.1_dm_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m219_MA2255.1_Max_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_8/cluster_2_node_8_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_homer_m11_homer_11_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m169_MA2205.1_CG7928_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m286_MA2322.1_ZIPIC_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_22/merged_consensuses/node_2/cluster_22_node_2_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_meme-chip_m5_MEME_ChIP_5_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_homer_m4_homer_4_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m273_MA2309.1_ewg_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_homer_m19_homer_19_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_21/merged_consensuses/node_3/cluster_21_node_3_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_homer_m2_homer_2_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_homer_m11_homer_11_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m169_MA2205.1_CG7928_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m286_MA2322.1_ZIPIC_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_22/merged_consensuses/node_3/cluster_22_node_3_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_7/cluster_2_node_7_cat.tf -v 0 -in_format tf -out_format tf -id cluster_2 -name cluster_2 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_7/cluster_2_node_7_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_21/merged_consensuses/node_2/cluster_21_node_2_cat.tf -v 0 -in_format tf -out_format tf -id cluster_21 -name cluster_21 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_21/merged_consensuses/node_2/cluster_21_node_2_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_22/merged_consensuses/node_2/cluster_22_node_2_cat.tf -v 0 -in_format tf -out_format tf -id cluster_22 -name cluster_22 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_22/merged_consensuses/node_2/cluster_22_node_2_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_8/cluster_2_node_8_cat.tf -v 0 -in_format tf -out_format tf -id cluster_2 -name cluster_2 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_8/cluster_2_node_8_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_9/cluster_2_node_9_cat.tf -v 0 -in_format tf -out_format tf -id cluster_2 -name cluster_2 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_9/cluster_2_node_9_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_22/merged_consensuses/node_1/cluster_22_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_22 -name cluster_22 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_22/merged_consensuses/node_1/cluster_22_node_1_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_22/merged_consensuses/node_3/cluster_22_node_3_cat.tf -v 0 -in_format tf -out_format tf -id cluster_22 -name cluster_22 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_22/merged_consensuses/node_3/cluster_22_node_3_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_21/merged_consensuses/node_3/cluster_21_node_3_cat.tf -v 0 -in_format tf -out_format tf -id cluster_21 -name cluster_21 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_21/merged_consensuses/node_3/cluster_21_node_3_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_22/merged_consensuses/node_3/cluster_22_nb_motifs_4.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054627_oUEjeZ


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_22/merged_consensuses/node_2/cluster_22_nb_motifs_3.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054627_kv4VOr


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_9/cluster_2_nb_motifs_3.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054627_gZLesO


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_21/merged_consensuses/node_1/cluster_21_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054627_TgKGeU


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_21/merged_consensuses/node_2/cluster_21_nb_motifs_3.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054627_2Ge5rD


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_7/cluster_2_nb_motifs_3.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054627_M4AYwa


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_8/cluster_2_nb_motifs_3.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054627_8yfsW7


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_21/merged_consensuses/node_3/cluster_21_nb_motifs_4.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054627_5HWHtC


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_22/merged_consensuses/node_1/cluster_22_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054627_upaxUS


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_9/cluster_2_node_9_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_21/merged_consensuses/node_1/cluster_21_node_1_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_22/merged_consensuses/node_2/cluster_22_node_2_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_21/merged_consensuses/node_2/cluster_21_node_2_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_21/merged_consensuses/node_3/cluster_21_node_3_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_22/merged_consensuses/node_3/cluster_22_node_3_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_7/cluster_2_node_7_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_22/merged_consensuses/node_1/cluster_22_node_1_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_8/cluster_2_node_8_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_homer_m9_homer_9_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_meme-chip_m5_MEME_ChIP_5_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_homer_m4_homer_4_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m273_MA2309.1_ewg_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_homer_m19_homer_19_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_21/merged_consensuses/node_4/cluster_21_node_4_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m184_MA2220.1_E_spl_mbeta-HLH_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m186_MA2222.1_E_spl_mgamma-HLH_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m183_MA2219.1_E_spl_m3-HLH_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m185_MA2221.1_E_spl_mdelta-HLH_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_10/cluster_2_node_10_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m113_MA0449.1_h_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m254_MA2290.1_Usf_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m245_MA2281.1_SREBP_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m269_MA2305.1_cyc_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_11/cluster_2_node_11_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m222_MA2258.1_Mnt_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m179_MA2215.1_dm_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m219_MA2255.1_Max_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m221_MA2257.1_Mitf_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m181_MA2217.1_dpn_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m204_MA2240.1_Hey_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_12/cluster_2_node_12_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_21/merged_consensuses/node_4/cluster_21_node_4_cat.tf -v 0 -in_format tf -out_format tf -id cluster_21 -name cluster_21 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_21/merged_consensuses/node_4/cluster_21_node_4_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_10/cluster_2_node_10_cat.tf -v 0 -in_format tf -out_format tf -id cluster_2 -name cluster_2 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_10/cluster_2_node_10_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_11/cluster_2_node_11_cat.tf -v 0 -in_format tf -out_format tf -id cluster_2 -name cluster_2 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_11/cluster_2_node_11_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_12/cluster_2_node_12_cat.tf -v 0 -in_format tf -out_format tf -id cluster_2 -name cluster_2 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_12/cluster_2_node_12_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_10/cluster_2_nb_motifs_4.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054627_wMnA5A


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_11/cluster_2_nb_motifs_4.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054627_6UjtSF


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_12/cluster_2_nb_motifs_6.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054627_IqWkuO


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_21/merged_consensuses/node_4/cluster_21_nb_motifs_5.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054627_4KPTtA


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_11/cluster_2_node_11_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_12/cluster_2_node_12_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_10/cluster_2_node_10_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_21/merged_consensuses/node_4/cluster_21_node_4_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m160_MA2196.1_bigmax_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m184_MA2220.1_E_spl_mbeta-HLH_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m186_MA2222.1_E_spl_mgamma-HLH_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m183_MA2219.1_E_spl_m3-HLH_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m185_MA2221.1_E_spl_mdelta-HLH_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_13/cluster_2_node_13_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m265_MA2301.1_clk_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m268_MA2304.1_cwo_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m222_MA2258.1_Mnt_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m179_MA2215.1_dm_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m219_MA2255.1_Max_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m221_MA2257.1_Mitf_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m181_MA2217.1_dpn_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m204_MA2240.1_Hey_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_14/cluster_2_node_14_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_13/cluster_2_node_13_cat.tf -v 0 -in_format tf -out_format tf -id cluster_2 -name cluster_2 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_13/cluster_2_node_13_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m160_MA2196.1_bigmax_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m184_MA2220.1_E_spl_mbeta-HLH_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m186_MA2222.1_E_spl_mgamma-HLH_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m183_MA2219.1_E_spl_m3-HLH_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m185_MA2221.1_E_spl_mdelta-HLH_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m265_MA2301.1_clk_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m268_MA2304.1_cwo_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m222_MA2258.1_Mnt_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m179_MA2215.1_dm_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m219_MA2255.1_Max_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m221_MA2257.1_Mitf_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m181_MA2217.1_dpn_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m204_MA2240.1_Hey_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_15/cluster_2_node_15_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_14/cluster_2_node_14_cat.tf -v 0 -in_format tf -out_format tf -id cluster_2 -name cluster_2 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_14/cluster_2_node_14_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_15/cluster_2_node_15_cat.tf -v 0 -in_format tf -out_format tf -id cluster_2 -name cluster_2 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_15/cluster_2_node_15_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_13/cluster_2_nb_motifs_5.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054629_Xa271n


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_15/cluster_2_nb_motifs_13.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054629_nQ9yBv


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_14/cluster_2_nb_motifs_8.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054629_7G8i66


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_15/cluster_2_node_15_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_13/cluster_2_node_13_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_14/cluster_2_node_14_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m177_MA2213.1_Dif_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m8_MA0023.1_dl_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_23/merged_consensuses/node_1/cluster_23_node_1_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m102_MA0253.1_vnd_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m96_MA0247.3_tin_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_24/merged_consensuses/node_1/cluster_24_node_1_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m104_MA0255.2_z_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m61_MA0211.1_bap_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_24/merged_consensuses/node_2/cluster_24_node_2_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m228_MA2264.1_Rel_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m177_MA2213.1_Dif_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m8_MA0023.1_dl_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_23/merged_consensuses/node_2/cluster_23_node_2_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_23/merged_consensuses/node_1/cluster_23_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_23 -name cluster_23 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_23/merged_consensuses/node_1/cluster_23_node_1_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_24/merged_consensuses/node_1/cluster_24_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_24 -name cluster_24 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_24/merged_consensuses/node_1/cluster_24_node_1_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m7_MA0022.1_dl_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m228_MA2264.1_Rel_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m177_MA2213.1_Dif_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m8_MA0023.1_dl_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_23/merged_consensuses/node_3/cluster_23_node_3_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m102_MA0253.1_vnd_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m96_MA0247.3_tin_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m104_MA0255.2_z_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m61_MA0211.1_bap_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_24/merged_consensuses/node_3/cluster_24_node_3_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_24/merged_consensuses/node_2/cluster_24_node_2_cat.tf -v 0 -in_format tf -out_format tf -id cluster_24 -name cluster_24 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_24/merged_consensuses/node_2/cluster_24_node_2_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_23/merged_consensuses/node_2/cluster_23_node_2_cat.tf -v 0 -in_format tf -out_format tf -id cluster_23 -name cluster_23 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_23/merged_consensuses/node_2/cluster_23_node_2_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_23/merged_consensuses/node_3/cluster_23_node_3_cat.tf -v 0 -in_format tf -out_format tf -id cluster_23 -name cluster_23 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_23/merged_consensuses/node_3/cluster_23_node_3_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_24/merged_consensuses/node_3/cluster_24_node_3_cat.tf -v 0 -in_format tf -out_format tf -id cluster_24 -name cluster_24 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_24/merged_consensuses/node_3/cluster_24_node_3_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m113_MA0449.1_h_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m254_MA2290.1_Usf_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m245_MA2281.1_SREBP_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m269_MA2305.1_cyc_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m160_MA2196.1_bigmax_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m184_MA2220.1_E_spl_mbeta-HLH_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m186_MA2222.1_E_spl_mgamma-HLH_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m183_MA2219.1_E_spl_m3-HLH_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m185_MA2221.1_E_spl_mdelta-HLH_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m265_MA2301.1_clk_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m268_MA2304.1_cwo_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m222_MA2258.1_Mnt_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m179_MA2215.1_dm_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m219_MA2255.1_Max_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m221_MA2257.1_Mitf_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m181_MA2217.1_dpn_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m204_MA2240.1_Hey_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_16/cluster_2_node_16_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_16/cluster_2_node_16_cat.tf -v 0 -in_format tf -out_format tf -id cluster_2 -name cluster_2 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_16/cluster_2_node_16_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_23/merged_consensuses/node_1/cluster_23_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054630_QsHrUd


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_24/merged_consensuses/node_1/cluster_24_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054630_ThSJ1d


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_23/merged_consensuses/node_3/cluster_23_nb_motifs_4.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054630_b2HSj5


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_23/merged_consensuses/node_2/cluster_23_nb_motifs_3.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054630_CY5q42


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_24/merged_consensuses/node_2/cluster_24_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054630_EpTGo8


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_24/merged_consensuses/node_3/cluster_24_nb_motifs_4.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054630_khmEGJ


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_16/cluster_2_nb_motifs_17.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054630_oBHDYM


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_23/merged_consensuses/node_1/cluster_23_node_1_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_24/merged_consensuses/node_1/cluster_24_node_1_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_24/merged_consensuses/node_2/cluster_24_node_2_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_23/merged_consensuses/node_2/cluster_23_node_2_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_23/merged_consensuses/node_3/cluster_23_node_3_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_24/merged_consensuses/node_3/cluster_24_node_3_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_16/cluster_2_node_16_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m158_MA2194.1_Atf6_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m173_MA2209.1_CrebA_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_18/cluster_2_node_18_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_18/cluster_2_node_18_cat.tf -v 0 -in_format tf -out_format tf -id cluster_2 -name cluster_2 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_18/cluster_2_node_18_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m257_MA2293.1_Xbp1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m113_MA0449.1_h_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m254_MA2290.1_Usf_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m245_MA2281.1_SREBP_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m269_MA2305.1_cyc_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m160_MA2196.1_bigmax_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m184_MA2220.1_E_spl_mbeta-HLH_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m186_MA2222.1_E_spl_mgamma-HLH_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m183_MA2219.1_E_spl_m3-HLH_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m185_MA2221.1_E_spl_mdelta-HLH_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m265_MA2301.1_clk_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m268_MA2304.1_cwo_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m222_MA2258.1_Mnt_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m179_MA2215.1_dm_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m219_MA2255.1_Max_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m221_MA2257.1_Mitf_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m181_MA2217.1_dpn_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m204_MA2240.1_Hey_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_17/cluster_2_node_17_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_17/cluster_2_node_17_cat.tf -v 0 -in_format tf -out_format tf -id cluster_2 -name cluster_2 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_17/cluster_2_node_17_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_18/cluster_2_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054631_ZoK05r


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_17/cluster_2_nb_motifs_18.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054631_QDW8g5


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_18/cluster_2_node_18_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_17/cluster_2_node_17_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m109_MA0445.1_D_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m238_MA2274.1_Sox14_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_25/merged_consensuses/node_1/cluster_25_node_1_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m93_MA0244.1_slbo_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_meme-chip_m3_MEME_ChIP_3_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_25/merged_consensuses/node_2/cluster_25_node_2_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m144_MA1836.2_dsx_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m239_MA2275.1_Sox15_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_25/merged_consensuses/node_3/cluster_25_node_3_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m270_MA2306.1_D1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m3_MA0012.2_br_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_26/merged_consensuses/node_1/cluster_26_node_1_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_25/merged_consensuses/node_1/cluster_25_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_25 -name cluster_25 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_25/merged_consensuses/node_1/cluster_25_node_1_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_25/merged_consensuses/node_2/cluster_25_node_2_cat.tf -v 0 -in_format tf -out_format tf -id cluster_25 -name cluster_25 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_25/merged_consensuses/node_2/cluster_25_node_2_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_26/merged_consensuses/node_1/cluster_26_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_26 -name cluster_26 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_26/merged_consensuses/node_1/cluster_26_node_1_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_25/merged_consensuses/node_3/cluster_25_node_3_cat.tf -v 0 -in_format tf -out_format tf -id cluster_25 -name cluster_25 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_25/merged_consensuses/node_3/cluster_25_node_3_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m257_MA2293.1_Xbp1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m113_MA0449.1_h_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m254_MA2290.1_Usf_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m245_MA2281.1_SREBP_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m269_MA2305.1_cyc_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m160_MA2196.1_bigmax_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m184_MA2220.1_E_spl_mbeta-HLH_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m186_MA2222.1_E_spl_mgamma-HLH_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m183_MA2219.1_E_spl_m3-HLH_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m185_MA2221.1_E_spl_mdelta-HLH_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m265_MA2301.1_clk_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m268_MA2304.1_cwo_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m222_MA2258.1_Mnt_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m179_MA2215.1_dm_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m219_MA2255.1_Max_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m221_MA2257.1_Mitf_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m181_MA2217.1_dpn_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m204_MA2240.1_Hey_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m158_MA2194.1_Atf6_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m173_MA2209.1_CrebA_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_19/cluster_2_node_19_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_19/cluster_2_node_19_cat.tf -v 0 -in_format tf -out_format tf -id cluster_2 -name cluster_2 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_19/cluster_2_node_19_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_25/merged_consensuses/node_1/cluster_25_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054632_FCH3N5


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_25/merged_consensuses/node_2/cluster_25_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054632_eDdeqa


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_26/merged_consensuses/node_1/cluster_26_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054632_T5KMeT


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_19/cluster_2_nb_motifs_20.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054632_GfBQTe


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_25/merged_consensuses/node_3/cluster_25_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054632_8RuvRO


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_19/cluster_2_node_19_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_26/merged_consensuses/node_1/cluster_26_node_1_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_25/merged_consensuses/node_2/cluster_25_node_2_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_25/merged_consensuses/node_3/cluster_25_node_3_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_25/merged_consensuses/node_1/cluster_25_node_1_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m274_MA2310.1_fru_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m270_MA2306.1_D1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m3_MA0012.2_br_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_26/merged_consensuses/node_2/cluster_26_node_2_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m109_MA0445.1_D_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m238_MA2274.1_Sox14_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m144_MA1836.2_dsx_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m239_MA2275.1_Sox15_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_25/merged_consensuses/node_4/cluster_25_node_4_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m134_MA1455.2_dmrt99B_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m109_MA0445.1_D_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m238_MA2274.1_Sox14_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m144_MA1836.2_dsx_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m239_MA2275.1_Sox15_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_25/merged_consensuses/node_5/cluster_25_node_5_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_26/merged_consensuses/node_2/cluster_26_node_2_cat.tf -v 0 -in_format tf -out_format tf -id cluster_26 -name cluster_26 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_26/merged_consensuses/node_2/cluster_26_node_2_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m93_MA0244.1_slbo_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_meme-chip_m3_MEME_ChIP_3_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m134_MA1455.2_dmrt99B_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m109_MA0445.1_D_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m238_MA2274.1_Sox14_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m144_MA1836.2_dsx_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m239_MA2275.1_Sox15_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_25/merged_consensuses/node_6/cluster_25_node_6_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_25/merged_consensuses/node_4/cluster_25_node_4_cat.tf -v 0 -in_format tf -out_format tf -id cluster_25 -name cluster_25 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_25/merged_consensuses/node_4/cluster_25_node_4_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_25/merged_consensuses/node_5/cluster_25_node_5_cat.tf -v 0 -in_format tf -out_format tf -id cluster_25 -name cluster_25 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_25/merged_consensuses/node_5/cluster_25_node_5_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_25/merged_consensuses/node_6/cluster_25_node_6_cat.tf -v 0 -in_format tf -out_format tf -id cluster_25 -name cluster_25 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_25/merged_consensuses/node_6/cluster_25_node_6_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_25/merged_consensuses/node_5/cluster_25_nb_motifs_5.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054633_JVLy7p


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_25/merged_consensuses/node_4/cluster_25_nb_motifs_4.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054633_EYwG31


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_26/merged_consensuses/node_2/cluster_26_nb_motifs_3.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054633_xLxn61


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_25/merged_consensuses/node_6/cluster_25_nb_motifs_7.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054633_Owz9i4


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_26/merged_consensuses/node_2/cluster_26_node_2_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_25/merged_consensuses/node_4/cluster_25_node_4_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_25/merged_consensuses/node_6/cluster_25_node_6_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_25/merged_consensuses/node_5/cluster_25_node_5_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m117_MA0454.1_odd_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m163_MA2199.1_bowl_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_27/merged_consensuses/node_1/cluster_27_node_1_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_homer_m15_homer_15_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_homer_m3_homer_3_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_27/merged_consensuses/node_2/cluster_27_node_2_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m125_MA0531.2_CTCF_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m225_MA2261.1_phol_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_28/merged_consensuses/node_1/cluster_28_node_1_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m63_MA0213.1_brk_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m125_MA0531.2_CTCF_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m225_MA2261.1_phol_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_28/merged_consensuses/node_2/cluster_28_node_2_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_27/merged_consensuses/node_1/cluster_27_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_27 -name cluster_27 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_27/merged_consensuses/node_1/cluster_27_node_1_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_27/merged_consensuses/node_2/cluster_27_node_2_cat.tf -v 0 -in_format tf -out_format tf -id cluster_27 -name cluster_27 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_27/merged_consensuses/node_2/cluster_27_node_2_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m86_MA0237.2_pan_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m63_MA0213.1_brk_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m125_MA0531.2_CTCF_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m225_MA2261.1_phol_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_28/merged_consensuses/node_3/cluster_28_node_3_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m117_MA0454.1_odd_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m163_MA2199.1_bowl_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_homer_m15_homer_15_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_homer_m3_homer_3_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_27/merged_consensuses/node_3/cluster_27_node_3_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_28/merged_consensuses/node_1/cluster_28_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_28 -name cluster_28 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_28/merged_consensuses/node_1/cluster_28_node_1_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_28/merged_consensuses/node_2/cluster_28_node_2_cat.tf -v 0 -in_format tf -out_format tf -id cluster_28 -name cluster_28 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_28/merged_consensuses/node_2/cluster_28_node_2_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_27/merged_consensuses/node_3/cluster_27_node_3_cat.tf -v 0 -in_format tf -out_format tf -id cluster_27 -name cluster_27 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_27/merged_consensuses/node_3/cluster_27_node_3_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_28/merged_consensuses/node_3/cluster_28_node_3_cat.tf -v 0 -in_format tf -out_format tf -id cluster_28 -name cluster_28 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_28/merged_consensuses/node_3/cluster_28_node_3_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_27/merged_consensuses/node_2/cluster_27_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054635_jZR3uO


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_27/merged_consensuses/node_1/cluster_27_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054635_o6rj28


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_27/merged_consensuses/node_3/cluster_27_nb_motifs_4.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054635_vBa9ti


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_28/merged_consensuses/node_2/cluster_28_nb_motifs_3.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054635_QzQVu7


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_28/merged_consensuses/node_1/cluster_28_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054635_JoxVEp


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_28/merged_consensuses/node_3/cluster_28_nb_motifs_4.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054635_f2oj8h


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_27/merged_consensuses/node_2/cluster_27_node_2_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_27/merged_consensuses/node_1/cluster_27_node_1_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_27/merged_consensuses/node_3/cluster_27_node_3_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_28/merged_consensuses/node_2/cluster_28_node_2_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_28/merged_consensuses/node_1/cluster_28_node_1_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_28/merged_consensuses/node_3/cluster_28_node_3_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m55_MA0205.3_Trl_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_homer_m12_homer_12_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_29/merged_consensuses/node_1/cluster_29_node_1_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_29/merged_consensuses/node_1/cluster_29_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_29 -name cluster_29 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_29/merged_consensuses/node_1/cluster_29_node_1_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_29/merged_consensuses/node_1/cluster_29_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054636_axv5rp


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_29/merged_consensuses/node_1/cluster_29_node_1_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m281_MA2317.1_nau_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m285_MA2321.1_tx_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_1/cluster_3_node_1_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m191_MA2227.1_esg_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m256_MA2292.1_wor_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_3/cluster_3_node_3_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m272_MA2308.1_da_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m281_MA2317.1_nau_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m285_MA2321.1_tx_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_2/cluster_3_node_2_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_1/cluster_3_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_3 -name cluster_3 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_1/cluster_3_node_1_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_3/cluster_3_node_3_cat.tf -v 0 -in_format tf -out_format tf -id cluster_3 -name cluster_3 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_3/cluster_3_node_3_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_2/cluster_3_node_2_cat.tf -v 0 -in_format tf -out_format tf -id cluster_3 -name cluster_3 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_2/cluster_3_node_2_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_3/cluster_3_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054637_7d5gJn


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_2/cluster_3_nb_motifs_3.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054637_NdjlVt


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_1/cluster_3_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054637_TCwRIk


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_1/cluster_3_node_1_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_3/cluster_3_node_3_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_2/cluster_3_node_2_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m154_MA2190.1_Aef1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m168_MA2204.1_CG4360_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_30/merged_consensuses/node_1/cluster_30_node_1_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m155_MA2191.1_amos_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m233_MA2269.1_sc_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_4/cluster_3_node_4_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_30/merged_consensuses/node_1/cluster_30_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_30 -name cluster_30 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_30/merged_consensuses/node_1/cluster_30_node_1_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m12_MA0086.3_sna_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m211_MA2247.1_Kah_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_5/cluster_3_node_5_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m167_MA2203.1_CG12605_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m234_MA2270.1_scrt_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_6/cluster_3_node_6_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_4/cluster_3_node_4_cat.tf -v 0 -in_format tf -out_format tf -id cluster_3 -name cluster_3 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_4/cluster_3_node_4_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_5/cluster_3_node_5_cat.tf -v 0 -in_format tf -out_format tf -id cluster_3 -name cluster_3 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_5/cluster_3_node_5_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_6/cluster_3_node_6_cat.tf -v 0 -in_format tf -out_format tf -id cluster_3 -name cluster_3 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_6/cluster_3_node_6_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_6/cluster_3_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054638_OQiicV


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_4/cluster_3_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054638_Klhgmk


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_5/cluster_3_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054638_6gDPtT


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_30/merged_consensuses/node_1/cluster_30_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054638_KoWNkG


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_4/cluster_3_node_4_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_6/cluster_3_node_6_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_30/merged_consensuses/node_1/cluster_30_node_1_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_5/cluster_3_node_5_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m116_MA0452.3_Kr_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m136_MA1457.2_grh_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_31/merged_consensuses/node_1/cluster_31_node_1_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m159_MA2195.1_ato_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m198_MA2234.1_Fer2_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_7/cluster_3_node_7_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m259_MA2295.1_ac_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m272_MA2308.1_da_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m281_MA2317.1_nau_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m285_MA2321.1_tx_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_8/cluster_3_node_8_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_31/merged_consensuses/node_1/cluster_31_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_31 -name cluster_31 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_31/merged_consensuses/node_1/cluster_31_node_1_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m12_MA0086.3_sna_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m211_MA2247.1_Kah_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m167_MA2203.1_CG12605_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m234_MA2270.1_scrt_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_9/cluster_3_node_9_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_7/cluster_3_node_7_cat.tf -v 0 -in_format tf -out_format tf -id cluster_3 -name cluster_3 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_7/cluster_3_node_7_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_8/cluster_3_node_8_cat.tf -v 0 -in_format tf -out_format tf -id cluster_3 -name cluster_3 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_8/cluster_3_node_8_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_9/cluster_3_node_9_cat.tf -v 0 -in_format tf -out_format tf -id cluster_3 -name cluster_3 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_9/cluster_3_node_9_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_7/cluster_3_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054639_L10TYz


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_31/merged_consensuses/node_1/cluster_31_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054639_QnebnM


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_9/cluster_3_nb_motifs_4.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054639_R5JdqD


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_8/cluster_3_nb_motifs_4.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054639_hrEDOk


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_7/cluster_3_node_7_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_9/cluster_3_node_9_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_31/merged_consensuses/node_1/cluster_31_node_1_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_8/cluster_3_node_8_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m124_MA0530.2_cnc::maf-S_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m252_MA2288.1_tj_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_32/merged_consensuses/node_1/cluster_32_node_1_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_32/merged_consensuses/node_1/cluster_32_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_32 -name cluster_32 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_32/merged_consensuses/node_1/cluster_32_node_1_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m267_MA2303.1_crp_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m155_MA2191.1_amos_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m233_MA2269.1_sc_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_10/cluster_3_node_10_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m197_MA2233.1_Fer1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m205_MA2241.1_HLH4C_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_11/cluster_3_node_11_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_10/cluster_3_node_10_cat.tf -v 0 -in_format tf -out_format tf -id cluster_3 -name cluster_3 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_10/cluster_3_node_10_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_11/cluster_3_node_11_cat.tf -v 0 -in_format tf -out_format tf -id cluster_3 -name cluster_3 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_11/cluster_3_node_11_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_32/merged_consensuses/node_1/cluster_32_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054640_Vhh4Pe


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_10/cluster_3_nb_motifs_3.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054640_kEBpIv


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_11/cluster_3_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054640_aa3WoX


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_32/merged_consensuses/node_1/cluster_32_node_1_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_10/cluster_3_node_10_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_11/cluster_3_node_11_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m11_MA0085.2_Su_H__aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m263_MA2299.1_CG4854_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_33/merged_consensuses/node_1/cluster_33_node_1_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_33/merged_consensuses/node_1/cluster_33_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_33 -name cluster_33 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_33/merged_consensuses/node_1/cluster_33_node_1_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m232_MA2268.1_sage_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m267_MA2303.1_crp_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m155_MA2191.1_amos_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m233_MA2269.1_sc_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_13/cluster_3_node_13_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m191_MA2227.1_esg_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m256_MA2292.1_wor_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m12_MA0086.3_sna_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m211_MA2247.1_Kah_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m167_MA2203.1_CG12605_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m234_MA2270.1_scrt_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_12/cluster_3_node_12_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m159_MA2195.1_ato_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m198_MA2234.1_Fer2_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m191_MA2227.1_esg_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m256_MA2292.1_wor_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m12_MA0086.3_sna_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m211_MA2247.1_Kah_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m167_MA2203.1_CG12605_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m234_MA2270.1_scrt_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_14/cluster_3_node_14_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_13/cluster_3_node_13_cat.tf -v 0 -in_format tf -out_format tf -id cluster_3 -name cluster_3 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_13/cluster_3_node_13_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_12/cluster_3_node_12_cat.tf -v 0 -in_format tf -out_format tf -id cluster_3 -name cluster_3 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_12/cluster_3_node_12_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_14/cluster_3_node_14_cat.tf -v 0 -in_format tf -out_format tf -id cluster_3 -name cluster_3 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_14/cluster_3_node_14_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_33/merged_consensuses/node_1/cluster_33_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054641_tHBRav


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_13/cluster_3_nb_motifs_4.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054641_nM9x3Q


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_12/cluster_3_nb_motifs_6.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054641_ZEkG46


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_14/cluster_3_nb_motifs_8.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054641_KB4ofH


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_33/merged_consensuses/node_1/cluster_33_node_1_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_13/cluster_3_node_13_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_14/cluster_3_node_14_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_12/cluster_3_node_12_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_homer_m6_homer_6_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_meme-chip_m22_MEME_ChIP_22_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_34/merged_consensuses/node_1/cluster_34_node_1_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_34/merged_consensuses/node_1/cluster_34_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_34 -name cluster_34 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_34/merged_consensuses/node_1/cluster_34_node_1_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_34/merged_consensuses/node_1/cluster_34_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054642_PA7Dp3


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_34/merged_consensuses/node_1/cluster_34_node_1_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cp /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m139_MA1460.2_pho_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_35/cluster_35_matrices_temp.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_35/cluster_35_matrices_temp.tf -from tf -to tf  -attr name cluster_35 -attr accession cluster_35 -set_attr merged_AC 'a_peak_motif_cluster:::MA1460.2_pho' -set_attr merged_ID 'MA1460.2_pho' -set_attr type merge -set_attr merge_type sum -set_attr merge_nb 1 -v 1 -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_35/cluster_35_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m197_MA2233.1_Fer1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m205_MA2241.1_HLH4C_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m232_MA2268.1_sage_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m267_MA2303.1_crp_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m155_MA2191.1_amos_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m233_MA2269.1_sc_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_15/cluster_3_node_15_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_15/cluster_3_node_15_cat.tf -v 0 -in_format tf -out_format tf -id cluster_3 -name cluster_3 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_15/cluster_3_node_15_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m259_MA2295.1_ac_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m272_MA2308.1_da_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m281_MA2317.1_nau_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m285_MA2321.1_tx_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m159_MA2195.1_ato_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m198_MA2234.1_Fer2_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m191_MA2227.1_esg_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m256_MA2292.1_wor_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m12_MA0086.3_sna_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m211_MA2247.1_Kah_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m167_MA2203.1_CG12605_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m234_MA2270.1_scrt_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_16/cluster_3_node_16_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_16/cluster_3_node_16_cat.tf -v 0 -in_format tf -out_format tf -id cluster_3 -name cluster_3 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_16/cluster_3_node_16_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m197_MA2233.1_Fer1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m205_MA2241.1_HLH4C_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m232_MA2268.1_sage_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m267_MA2303.1_crp_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m155_MA2191.1_amos_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m233_MA2269.1_sc_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m259_MA2295.1_ac_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m272_MA2308.1_da_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m281_MA2317.1_nau_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m285_MA2321.1_tx_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m159_MA2195.1_ato_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m198_MA2234.1_Fer2_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m191_MA2227.1_esg_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m256_MA2292.1_wor_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m12_MA0086.3_sna_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m211_MA2247.1_Kah_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m167_MA2203.1_CG12605_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m234_MA2270.1_scrt_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_17/cluster_3_node_17_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_17/cluster_3_node_17_cat.tf -v 0 -in_format tf -out_format tf -id cluster_3 -name cluster_3 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_17/cluster_3_node_17_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_35/cluster_35_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_15/cluster_3_nb_motifs_6.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054643_yc2INF


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_16/cluster_3_nb_motifs_12.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054643_pthxu0


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_17/cluster_3_nb_motifs_18.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054643_J6Gatn


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_17/cluster_3_node_17_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_15/cluster_3_node_15_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_16/cluster_3_node_16_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cp /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m43_MA0193.1_schlank_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_36/cluster_36_matrices_temp.tf


cp /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m149_MA1841.2_kn_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_37/cluster_37_matrices_temp.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_36/cluster_36_matrices_temp.tf -from tf -to tf  -attr name cluster_36 -attr accession cluster_36 -set_attr merged_AC 'a_peak_motif_cluster:::MA0193.1_schlank' -set_attr merged_ID 'MA0193.1_schlank' -set_attr type merge -set_attr merge_type sum -set_attr merge_nb 1 -v 1 -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_36/cluster_36_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_37/cluster_37_matrices_temp.tf -from tf -to tf  -attr name cluster_37 -attr accession cluster_37 -set_attr merged_AC 'a_peak_motif_cluster:::MA1841.2_kn' -set_attr merged_ID 'MA1841.2_kn' -set_attr type merge -set_attr merge_type sum -set_attr merge_nb 1 -v 1 -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_37/cluster_37_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_37/cluster_37_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_36/cluster_36_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cp /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m251_MA2287.1_TfAP-2_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_38/cluster_38_matrices_temp.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m164_MA2200.1_bs_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m66_MA0216.2_cad_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_39/merged_consensuses/node_1/cluster_39_node_1_cat.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_38/cluster_38_matrices_temp.tf -from tf -to tf  -attr name cluster_38 -attr accession cluster_38 -set_attr merged_AC 'a_peak_motif_cluster:::MA2287.1_TfAP-2' -set_attr merged_ID 'MA2287.1_TfAP-2' -set_attr type merge -set_attr merge_type sum -set_attr merge_nb 1 -v 1 -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_38/cluster_38_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m178_MA2214.1_dimm_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m98_MA0249.3_twi_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_18/cluster_3_node_18_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_39/merged_consensuses/node_1/cluster_39_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_39 -name cluster_39 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_39/merged_consensuses/node_1/cluster_39_node_1_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_18/cluster_3_node_18_cat.tf -v 0 -in_format tf -out_format tf -id cluster_3 -name cluster_3 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_18/cluster_3_node_18_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m197_MA2233.1_Fer1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m205_MA2241.1_HLH4C_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m232_MA2268.1_sage_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m267_MA2303.1_crp_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m155_MA2191.1_amos_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m233_MA2269.1_sc_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m259_MA2295.1_ac_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m272_MA2308.1_da_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m281_MA2317.1_nau_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m285_MA2321.1_tx_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m159_MA2195.1_ato_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m198_MA2234.1_Fer2_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m191_MA2227.1_esg_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m256_MA2292.1_wor_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m12_MA0086.3_sna_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m211_MA2247.1_Kah_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m167_MA2203.1_CG12605_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m234_MA2270.1_scrt_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m178_MA2214.1_dimm_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m98_MA0249.3_twi_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_19/cluster_3_node_19_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_19/cluster_3_node_19_cat.tf -v 0 -in_format tf -out_format tf -id cluster_3 -name cluster_3 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_19/cluster_3_node_19_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_38/cluster_38_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_39/merged_consensuses/node_1/cluster_39_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054645_xFaaK4


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_18/cluster_3_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054645_47zRCg


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_19/cluster_3_nb_motifs_20.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054645_f9AMx8


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_18/cluster_3_node_18_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_39/merged_consensuses/node_1/cluster_39_node_1_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_19/cluster_3_node_19_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m131_MA0915.2_dve_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m62_MA0212.1_bcd_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_1/cluster_4_node_1_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m145_MA1837.2_Elba1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m146_MA1838.2_Elba2_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_2/cluster_4_node_2_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m22_MA0172.1_CG11294_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m58_MA0208.1_al_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_3/cluster_4_node_3_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_2/cluster_4_node_2_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_2/cluster_4_node_2_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_1/cluster_4_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_1/cluster_4_node_1_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_3/cluster_4_node_3_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_3/cluster_4_node_3_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_2/cluster_4_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054646_fGHkU5


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_1/cluster_4_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054646_bTZjqW


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_3/cluster_4_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054646_ES0me1


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_2/cluster_4_node_2_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_1/cluster_4_node_1_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_3/cluster_4_node_3_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cp /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_homer_m10_homer_10_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_40/cluster_40_matrices_temp.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m29_MA0179.1_CG32532_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m70_MA0220.1_en_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_4/cluster_4_node_4_cat.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_40/cluster_40_matrices_temp.tf -from tf -to tf  -attr name cluster_40 -attr accession cluster_40 -set_attr merged_AC 'oct4_homer:::homer_10' -set_attr merged_ID 'homer_10' -set_attr type merge -set_attr merge_type sum -set_attr merge_nb 1 -v 1 -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_40/cluster_40_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m106_MA0257.2_zen2_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m39_MA0189.2_E5_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_6/cluster_4_node_6_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m83_MA0234.1_oc_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m131_MA0915.2_dve_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m62_MA0212.1_bcd_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_5/cluster_4_node_5_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_4/cluster_4_node_4_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_4/cluster_4_node_4_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_5/cluster_4_node_5_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_5/cluster_4_node_5_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_6/cluster_4_node_6_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_6/cluster_4_node_6_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_5/cluster_4_nb_motifs_3.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054647_DYozgF


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_40/cluster_40_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_6/cluster_4_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054647_KPYQzl


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_4/cluster_4_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054647_tERTX9


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_4/cluster_4_node_4_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_5/cluster_4_node_5_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_6/cluster_4_node_6_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cp /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m189_MA2225.1_erm_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_41/cluster_41_matrices_temp.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m34_MA0184.2_CG9876_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m50_MA0200.2_Pph13_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_7/cluster_4_node_7_cat.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_41/cluster_41_matrices_temp.tf -from tf -to tf  -attr name cluster_41 -attr accession cluster_41 -set_attr merged_AC 'a_peak_motif_cluster:::MA2225.1_erm' -set_attr merged_ID 'MA2225.1_erm' -set_attr type merge -set_attr merge_type sum -set_attr merge_nb 1 -v 1 -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_41/cluster_41_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m59_MA0209.1_ap_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m77_MA0228.1_ind_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_8/cluster_4_node_8_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m44_MA0194.1_Lim1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m22_MA0172.1_CG11294_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m58_MA0208.1_al_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_9/cluster_4_node_9_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_7/cluster_4_node_7_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_7/cluster_4_node_7_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_8/cluster_4_node_8_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_8/cluster_4_node_8_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_9/cluster_4_node_9_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_9/cluster_4_node_9_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_41/cluster_41_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_8/cluster_4_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054648_08NGwo


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_7/cluster_4_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054648_DDxCBV


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_9/cluster_4_nb_motifs_3.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054648_VDn9lO


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_8/cluster_4_node_8_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_7/cluster_4_node_7_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_9/cluster_4_node_9_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cp /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m237_MA2273.1_Sox102F_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_42/cluster_42_matrices_temp.tf


cp /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m153_MA2189.1_Adf1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_43/cluster_43_matrices_temp.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m27_MA0177.1_CG18599_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m87_MA0238.1_pb_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_10/cluster_4_node_10_cat.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_42/cluster_42_matrices_temp.tf -from tf -to tf  -attr name cluster_42 -attr accession cluster_42 -set_attr merged_AC 'a_peak_motif_cluster:::MA2273.1_Sox102F' -set_attr merged_ID 'MA2273.1_Sox102F' -set_attr type merge -set_attr merge_type sum -set_attr merge_nb 1 -v 1 -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_42/cluster_42_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_43/cluster_43_matrices_temp.tf -from tf -to tf  -attr name cluster_43 -attr accession cluster_43 -set_attr merged_AC 'a_peak_motif_cluster:::MA2189.1_Adf1' -set_attr merged_ID 'MA2189.1_Adf1' -set_attr type merge -set_attr merge_type sum -set_attr merge_nb 1 -v 1 -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_43/cluster_43_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m31_MA0181.1_Vsx1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m85_MA0236.1_otp_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_12/cluster_4_node_12_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m100_MA0251.1_unpg_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m29_MA0179.1_CG32532_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m70_MA0220.1_en_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_11/cluster_4_node_11_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_10/cluster_4_node_10_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_10/cluster_4_node_10_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_11/cluster_4_node_11_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_11/cluster_4_node_11_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_12/cluster_4_node_12_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_12/cluster_4_node_12_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_11/cluster_4_nb_motifs_3.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054649_twIhrl


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_43/cluster_43_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_42/cluster_42_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_10/cluster_4_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054649_yaWSUr


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_12/cluster_4_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054649_pYLzRB


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_11/cluster_4_node_11_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_12/cluster_4_node_12_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_10/cluster_4_node_10_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cp /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m271_MA2307.1_D19B_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_44/cluster_44_matrices_temp.tf


cp /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m142_MA1700.1_Clamp_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_45/cluster_45_matrices_temp.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m28_MA0178.1_CG32105_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m89_MA0240.1_repo_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_13/cluster_4_node_13_cat.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_44/cluster_44_matrices_temp.tf -from tf -to tf  -attr name cluster_44 -attr accession cluster_44 -set_attr merged_AC 'a_peak_motif_cluster:::MA2307.1_D19B' -set_attr merged_ID 'MA2307.1_D19B' -set_attr type merge -set_attr merge_type sum -set_attr merge_nb 1 -v 1 -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_44/cluster_44_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_45/cluster_45_matrices_temp.tf -from tf -to tf  -attr name cluster_45 -attr accession cluster_45 -set_attr merged_AC 'a_peak_motif_cluster:::MA1700.1_Clamp' -set_attr merged_ID 'MA1700.1_Clamp' -set_attr type merge -set_attr merge_type sum -set_attr merge_nb 1 -v 1 -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_45/cluster_45_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m48_MA0198.1_OdsH_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m52_MA0202.1_Rx_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_14/cluster_4_node_14_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m16_MA0166.1_Antp_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m74_MA0225.1_ftz_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_15/cluster_4_node_15_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_13/cluster_4_node_13_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_13/cluster_4_node_13_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_14/cluster_4_node_14_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_14/cluster_4_node_14_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_15/cluster_4_node_15_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_15/cluster_4_node_15_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_44/cluster_44_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_45/cluster_45_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_13/cluster_4_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054650_VZRRGu


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_14/cluster_4_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054650_e1a7TV


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_15/cluster_4_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054650_YZuRN5


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_13/cluster_4_node_13_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_14/cluster_4_node_14_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_15/cluster_4_node_15_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cp /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_homer_m8_homer_8_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_46/cluster_46_matrices_temp.tf


cp /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m35_MA0185.2_Deaf1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_47/cluster_47_matrices_temp.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_47/cluster_47_matrices_temp.tf -from tf -to tf  -attr name cluster_47 -attr accession cluster_47 -set_attr merged_AC 'a_peak_motif_cluster:::MA0185.2_Deaf1' -set_attr merged_ID 'MA0185.2_Deaf1' -set_attr type merge -set_attr merge_type sum -set_attr merge_nb 1 -v 1 -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_47/cluster_47_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_46/cluster_46_matrices_temp.tf -from tf -to tf  -attr name cluster_46 -attr accession cluster_46 -set_attr merged_AC 'oct4_homer:::homer_8' -set_attr merged_ID 'homer_8' -set_attr type merge -set_attr merge_type sum -set_attr merge_nb 1 -v 1 -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_46/cluster_46_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m36_MA0186.1_Dfd_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m53_MA0203.1_Scr_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_16/cluster_4_node_16_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m56_MA0206.1_abd-A_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m79_MA0230.1_lab_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_17/cluster_4_node_17_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m25_MA0175.1_lms_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m94_MA0245.1_slou_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_18/cluster_4_node_18_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_16/cluster_4_node_16_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_16/cluster_4_node_16_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_17/cluster_4_node_17_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_17/cluster_4_node_17_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_18/cluster_4_node_18_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_18/cluster_4_node_18_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_47/cluster_47_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_46/cluster_46_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_17/cluster_4_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054651_BH76rx


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_18/cluster_4_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054651_vlE26i


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_16/cluster_4_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054651_g6plUb


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_17/cluster_4_node_17_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_16/cluster_4_node_16_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_18/cluster_4_node_18_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cp /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m92_MA0243.2_sd_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_48/cluster_48_matrices_temp.tf


cp /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m128_MA0534.1_EcR::usp_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_49/cluster_49_matrices_temp.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_48/cluster_48_matrices_temp.tf -from tf -to tf  -attr name cluster_48 -attr accession cluster_48 -set_attr merged_AC 'a_peak_motif_cluster:::MA0243.2_sd' -set_attr merged_ID 'MA0243.2_sd' -set_attr type merge -set_attr merge_type sum -set_attr merge_nb 1 -v 1 -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_48/cluster_48_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_49/cluster_49_matrices_temp.tf -from tf -to tf  -attr name cluster_49 -attr accession cluster_49 -set_attr merged_AC 'a_peak_motif_cluster:::MA0534.1_EcR::usp' -set_attr merged_ID 'MA0534.1_EcR::usp' -set_attr type merge -set_attr merge_type sum -set_attr merge_nb 1 -v 1 -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_49/cluster_49_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m59_MA0209.1_ap_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m77_MA0228.1_ind_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m27_MA0177.1_CG18599_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m87_MA0238.1_pb_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_19/cluster_4_node_19_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m42_MA0192.1_Hmx_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m99_MA0250.1_unc-4_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_21/cluster_4_node_21_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m75_MA0226.1_hbn_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m100_MA0251.1_unpg_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m29_MA0179.1_CG32532_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m70_MA0220.1_en_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_20/cluster_4_node_20_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_19/cluster_4_node_19_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_19/cluster_4_node_19_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_20/cluster_4_node_20_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_20/cluster_4_node_20_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_21/cluster_4_node_21_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_21/cluster_4_node_21_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_49/cluster_49_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_48/cluster_48_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_19/cluster_4_nb_motifs_4.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054652_inOpN9


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_20/cluster_4_nb_motifs_4.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054652_DuTpLO


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_21/cluster_4_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054652_3zbD3b


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_21/cluster_4_node_21_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_19/cluster_4_node_19_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_20/cluster_4_node_20_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cp /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m129_MA0535.1_Mad_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_50/cluster_50_matrices_temp.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_meme-chip_m21_MEME_ChIP_21_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_meme-chip_m24_MEME_ChIP_24_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_1/cluster_5_node_1_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_meme-chip_m13_MEME_ChIP_13_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_meme-chip_m14_MEME_ChIP_14_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_2/cluster_5_node_2_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_meme-chip_m16_MEME_ChIP_16_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_meme-chip_m18_MEME_ChIP_18_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_3/cluster_5_node_3_cat.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_50/cluster_50_matrices_temp.tf -from tf -to tf  -attr name cluster_50 -attr accession cluster_50 -set_attr merged_AC 'a_peak_motif_cluster:::MA0535.1_Mad' -set_attr merged_ID 'MA0535.1_Mad' -set_attr type merge -set_attr merge_type sum -set_attr merge_nb 1 -v 1 -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_50/cluster_50_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_1/cluster_5_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_5 -name cluster_5 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_1/cluster_5_node_1_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_2/cluster_5_node_2_cat.tf -v 0 -in_format tf -out_format tf -id cluster_5 -name cluster_5 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_2/cluster_5_node_2_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_3/cluster_5_node_3_cat.tf -v 0 -in_format tf -out_format tf -id cluster_5 -name cluster_5 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_3/cluster_5_node_3_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m69_MA0219.1_ems_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m71_MA0221.1_eve_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_23/cluster_4_node_23_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m65_MA0215.1_btn_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m36_MA0186.1_Dfd_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m53_MA0203.1_Scr_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_22/cluster_4_node_22_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m16_MA0166.1_Antp_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m74_MA0225.1_ftz_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m56_MA0206.1_abd-A_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m79_MA0230.1_lab_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_24/cluster_4_node_24_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_23/cluster_4_node_23_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_23/cluster_4_node_23_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_22/cluster_4_node_22_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_22/cluster_4_node_22_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_24/cluster_4_node_24_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_24/cluster_4_node_24_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_50/cluster_50_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_3/cluster_5_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054653_qwI6dd


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_24/cluster_4_nb_motifs_4.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054653_wmabBC


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_1/cluster_5_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054653_VIE1xL


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_2/cluster_5_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054653_r1vU1O


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_23/cluster_4_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054653_LSK4kD


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_22/cluster_4_nb_motifs_3.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054653_EvAFdz


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_3/cluster_5_node_3_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_24/cluster_4_node_24_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_23/cluster_4_node_23_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_22/cluster_4_node_22_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_1/cluster_5_node_1_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_2/cluster_5_node_2_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cp /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m279_MA2315.1_insv_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_51/cluster_51_matrices_temp.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_51/cluster_51_matrices_temp.tf -from tf -to tf  -attr name cluster_51 -attr accession cluster_51 -set_attr merged_AC 'a_peak_motif_cluster:::MA2315.1_insv' -set_attr merged_ID 'MA2315.1_insv' -set_attr type merge -set_attr merge_type sum -set_attr merge_nb 1 -v 1 -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_51/cluster_51_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_meme-chip_m10_MEME_ChIP_10_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_meme-chip_m25_MEME_ChIP_25_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_6/cluster_5_node_6_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_meme-chip_m20_MEME_ChIP_20_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_meme-chip_m21_MEME_ChIP_21_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_meme-chip_m24_MEME_ChIP_24_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_4/cluster_5_node_4_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_meme-chip_m15_MEME_ChIP_15_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_meme-chip_m20_MEME_ChIP_20_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_meme-chip_m21_MEME_ChIP_21_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_meme-chip_m24_MEME_ChIP_24_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_5/cluster_5_node_5_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_4/cluster_5_node_4_cat.tf -v 0 -in_format tf -out_format tf -id cluster_5 -name cluster_5 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_4/cluster_5_node_4_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_6/cluster_5_node_6_cat.tf -v 0 -in_format tf -out_format tf -id cluster_5 -name cluster_5 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_6/cluster_5_node_6_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m108_MA0444.1_CG34031_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m21_MA0171.1_CG11085_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_25/cluster_4_node_25_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_5/cluster_5_node_5_cat.tf -v 0 -in_format tf -out_format tf -id cluster_5 -name cluster_5 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_5/cluster_5_node_5_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m17_MA0167.1_Awh_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m31_MA0181.1_Vsx1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m85_MA0236.1_otp_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_26/cluster_4_node_26_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m90_MA0241.1_ro_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m48_MA0198.1_OdsH_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m52_MA0202.1_Rx_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_27/cluster_4_node_27_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_25/cluster_4_node_25_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_25/cluster_4_node_25_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_26/cluster_4_node_26_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_26/cluster_4_node_26_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_27/cluster_4_node_27_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_27/cluster_4_node_27_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_51/cluster_51_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_25/cluster_4_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054654_foHM2e


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_26/cluster_4_nb_motifs_3.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054654_eok8IS


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_27/cluster_4_nb_motifs_3.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054654_ciuAXE


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_6/cluster_5_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054654_xvy7if


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_4/cluster_5_nb_motifs_3.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054654_glL07t


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_5/cluster_5_nb_motifs_4.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054654_hQWu0j


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_26/cluster_4_node_26_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_6/cluster_5_node_6_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_4/cluster_5_node_4_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_25/cluster_4_node_25_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_27/cluster_4_node_27_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_5/cluster_5_node_5_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cp /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m235_MA2271.1_sens_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_52/cluster_52_matrices_temp.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_52/cluster_52_matrices_temp.tf -from tf -to tf  -attr name cluster_52 -attr accession cluster_52 -set_attr merged_AC 'a_peak_motif_cluster:::MA2271.1_sens' -set_attr merged_ID 'MA2271.1_sens' -set_attr type merge -set_attr merge_type sum -set_attr merge_nb 1 -v 1 -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_52/cluster_52_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_homer_m1_homer_1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_meme-chip_m10_MEME_ChIP_10_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_meme-chip_m25_MEME_ChIP_25_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_7/cluster_5_node_7_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_meme-chip_m11_MEME_ChIP_11_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_meme-chip_m12_MEME_ChIP_12_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_8/cluster_5_node_8_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_meme-chip_m17_MEME_ChIP_17_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_meme-chip_m16_MEME_ChIP_16_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_meme-chip_m18_MEME_ChIP_18_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_9/cluster_5_node_9_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_7/cluster_5_node_7_cat.tf -v 0 -in_format tf -out_format tf -id cluster_5 -name cluster_5 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_7/cluster_5_node_7_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_8/cluster_5_node_8_cat.tf -v 0 -in_format tf -out_format tf -id cluster_5 -name cluster_5 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_8/cluster_5_node_8_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_9/cluster_5_node_9_cat.tf -v 0 -in_format tf -out_format tf -id cluster_5 -name cluster_5 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_9/cluster_5_node_9_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m81_MA0232.1_lbl_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m106_MA0257.2_zen2_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m39_MA0189.2_E5_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_28/cluster_4_node_28_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m40_MA0190.1_Gsc_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m83_MA0234.1_oc_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m131_MA0915.2_dve_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m62_MA0212.1_bcd_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_30/cluster_4_node_30_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m44_MA0194.1_Lim1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m22_MA0172.1_CG11294_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m58_MA0208.1_al_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m28_MA0178.1_CG32105_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m89_MA0240.1_repo_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_29/cluster_4_node_29_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_28/cluster_4_node_28_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_28/cluster_4_node_28_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_30/cluster_4_node_30_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_30/cluster_4_node_30_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_29/cluster_4_node_29_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_29/cluster_4_node_29_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_52/cluster_52_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_7/cluster_5_nb_motifs_3.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054655_5rS4bY


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_8/cluster_5_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054655_47LLh9


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_29/cluster_4_nb_motifs_5.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054655_QuoxgO


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_9/cluster_5_nb_motifs_3.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054655_Tr8Uxw


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_30/cluster_4_nb_motifs_4.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054655_djxsXv


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_28/cluster_4_nb_motifs_3.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054655_qPiPAQ


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_29/cluster_4_node_29_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_8/cluster_5_node_8_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_9/cluster_5_node_9_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_7/cluster_5_node_7_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_30/cluster_4_node_30_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_28/cluster_4_node_28_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cp /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m230_MA2266.1_Rfx_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_53/cluster_53_matrices_temp.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_53/cluster_53_matrices_temp.tf -from tf -to tf  -attr name cluster_53 -attr accession cluster_53 -set_attr merged_AC 'a_peak_motif_cluster:::MA2266.1_Rfx' -set_attr merged_ID 'MA2266.1_Rfx' -set_attr type merge -set_attr merge_type sum -set_attr merge_nb 1 -v 1 -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_53/cluster_53_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m47_MA0197.3_nub_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_homer_m13_homer_13_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_11/cluster_5_node_11_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_meme-chip_m11_MEME_ChIP_11_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_meme-chip_m12_MEME_ChIP_12_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_meme-chip_m17_MEME_ChIP_17_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_meme-chip_m16_MEME_ChIP_16_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_meme-chip_m18_MEME_ChIP_18_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_10/cluster_5_node_10_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_11/cluster_5_node_11_cat.tf -v 0 -in_format tf -out_format tf -id cluster_5 -name cluster_5 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_11/cluster_5_node_11_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_10/cluster_5_node_10_cat.tf -v 0 -in_format tf -out_format tf -id cluster_5 -name cluster_5 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_10/cluster_5_node_10_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m64_MA0214.1_bsh_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m25_MA0175.1_lms_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m94_MA0245.1_slou_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_32/cluster_4_node_32_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m59_MA0209.1_ap_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m77_MA0228.1_ind_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m27_MA0177.1_CG18599_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m87_MA0238.1_pb_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m69_MA0219.1_ems_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m71_MA0221.1_eve_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_31/cluster_4_node_31_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m75_MA0226.1_hbn_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m100_MA0251.1_unpg_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m29_MA0179.1_CG32532_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m70_MA0220.1_en_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m90_MA0241.1_ro_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m48_MA0198.1_OdsH_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m52_MA0202.1_Rx_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_33/cluster_4_node_33_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_32/cluster_4_node_32_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_32/cluster_4_node_32_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_31/cluster_4_node_31_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_31/cluster_4_node_31_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_33/cluster_4_node_33_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_33/cluster_4_node_33_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_53/cluster_53_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_11/cluster_5_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054656_4hv8Nq


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_10/cluster_5_nb_motifs_5.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054656_xtgSUh


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_31/cluster_4_nb_motifs_6.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054656_bXPbtH


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_32/cluster_4_nb_motifs_3.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054656_B3tRzk


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_33/cluster_4_nb_motifs_7.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054656_9PTN1v


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_11/cluster_5_node_11_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_10/cluster_5_node_10_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_31/cluster_4_node_31_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_33/cluster_4_node_33_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_32/cluster_4_node_32_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cp /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m282_MA2318.1_pita_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_54/cluster_54_matrices_temp.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_54/cluster_54_matrices_temp.tf -from tf -to tf  -attr name cluster_54 -attr accession cluster_54 -set_attr merged_AC 'a_peak_motif_cluster:::MA2318.1_pita' -set_attr merged_ID 'MA2318.1_pita' -set_attr type merge -set_attr merge_type sum -set_attr merge_nb 1 -v 1 -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_54/cluster_54_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_meme-chip_m19_MEME_ChIP_19_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_meme-chip_m23_MEME_ChIP_23_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_12/cluster_5_node_12_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_12/cluster_5_node_12_cat.tf -v 0 -in_format tf -out_format tf -id cluster_5 -name cluster_5 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_12/cluster_5_node_12_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_meme-chip_m11_MEME_ChIP_11_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_meme-chip_m12_MEME_ChIP_12_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_meme-chip_m17_MEME_ChIP_17_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_meme-chip_m16_MEME_ChIP_16_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_meme-chip_m18_MEME_ChIP_18_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_meme-chip_m19_MEME_ChIP_19_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_meme-chip_m23_MEME_ChIP_23_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_13/cluster_5_node_13_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m18_MA0168.1_B-H1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m19_MA0169.1_B-H2_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_34/cluster_4_node_34_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m47_MA0197.3_nub_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_homer_m13_homer_13_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_meme-chip_m11_MEME_ChIP_11_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_meme-chip_m12_MEME_ChIP_12_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_meme-chip_m17_MEME_ChIP_17_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_meme-chip_m16_MEME_ChIP_16_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_meme-chip_m18_MEME_ChIP_18_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_meme-chip_m19_MEME_ChIP_19_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_meme-chip_m23_MEME_ChIP_23_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_14/cluster_5_node_14_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m41_MA0191.1_HGTX_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m17_MA0167.1_Awh_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m31_MA0181.1_Vsx1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m85_MA0236.1_otp_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_35/cluster_4_node_35_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_13/cluster_5_node_13_cat.tf -v 0 -in_format tf -out_format tf -id cluster_5 -name cluster_5 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_13/cluster_5_node_13_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m46_MA0196.1_NK7.1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m64_MA0214.1_bsh_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m25_MA0175.1_lms_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m94_MA0245.1_slou_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_36/cluster_4_node_36_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_34/cluster_4_node_34_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_34/cluster_4_node_34_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_35/cluster_4_node_35_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_35/cluster_4_node_35_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_14/cluster_5_node_14_cat.tf -v 0 -in_format tf -out_format tf -id cluster_5 -name cluster_5 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_14/cluster_5_node_14_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_36/cluster_4_node_36_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_36/cluster_4_node_36_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_54/cluster_54_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_12/cluster_5_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054657_JNGDkj


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_13/cluster_5_nb_motifs_7.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054657_yjRPlm


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_34/cluster_4_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054657_O8bAY0


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_36/cluster_4_nb_motifs_4.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054657_LQhftP


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_14/cluster_5_nb_motifs_9.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054657_YhdORA


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_35/cluster_4_nb_motifs_4.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054657_mRNc5G


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_12/cluster_5_node_12_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_34/cluster_4_node_34_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_36/cluster_4_node_36_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_13/cluster_5_node_13_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_14/cluster_5_node_14_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_35/cluster_4_node_35_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cp /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m127_MA0533.1_su_Hw__aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_55/cluster_55_matrices_temp.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_55/cluster_55_matrices_temp.tf -from tf -to tf  -attr name cluster_55 -attr accession cluster_55 -set_attr merged_AC 'a_peak_motif_cluster:::MA0533.1_su(Hw)' -set_attr merged_ID 'MA0533.1_su(Hw)' -set_attr type merge -set_attr merge_type sum -set_attr merge_nb 1 -v 1 -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_55/cluster_55_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m103_MA0254.1_vvl_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m143_MA1702.2_Pdp1_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_16/cluster_5_node_16_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_16/cluster_5_node_16_cat.tf -v 0 -in_format tf -out_format tf -id cluster_5 -name cluster_5 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_16/cluster_5_node_16_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_meme-chip_m15_MEME_ChIP_15_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_meme-chip_m20_MEME_ChIP_20_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_meme-chip_m21_MEME_ChIP_21_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_meme-chip_m24_MEME_ChIP_24_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m47_MA0197.3_nub_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_homer_m13_homer_13_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_meme-chip_m11_MEME_ChIP_11_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_meme-chip_m12_MEME_ChIP_12_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_meme-chip_m17_MEME_ChIP_17_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_meme-chip_m16_MEME_ChIP_16_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_meme-chip_m18_MEME_ChIP_18_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_meme-chip_m19_MEME_ChIP_19_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_meme-chip_m23_MEME_ChIP_23_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_15/cluster_5_node_15_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_15/cluster_5_node_15_cat.tf -v 0 -in_format tf -out_format tf -id cluster_5 -name cluster_5 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_15/cluster_5_node_15_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m13_MA0094.3_Ubx_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m16_MA0166.1_Antp_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m74_MA0225.1_ftz_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m56_MA0206.1_abd-A_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m79_MA0230.1_lab_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_37/cluster_4_node_37_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m105_MA0256.1_zen_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m59_MA0209.1_ap_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m77_MA0228.1_ind_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m27_MA0177.1_CG18599_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m87_MA0238.1_pb_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m69_MA0219.1_ems_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m71_MA0221.1_eve_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_38/cluster_4_node_38_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_37/cluster_4_node_37_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_37/cluster_4_node_37_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m75_MA0226.1_hbn_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m100_MA0251.1_unpg_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m29_MA0179.1_CG32532_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m70_MA0220.1_en_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m90_MA0241.1_ro_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m48_MA0198.1_OdsH_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m52_MA0202.1_Rx_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m41_MA0191.1_HGTX_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m17_MA0167.1_Awh_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m31_MA0181.1_Vsx1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m85_MA0236.1_otp_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_39/cluster_4_node_39_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_38/cluster_4_node_38_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_38/cluster_4_node_38_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_39/cluster_4_node_39_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_39/cluster_4_node_39_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_16/cluster_5_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054658_1M8IC2


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_55/cluster_55_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_39/cluster_4_nb_motifs_11.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054658_H4TXhW


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_37/cluster_4_nb_motifs_5.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054658_EmaxoX


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_15/cluster_5_nb_motifs_13.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054658_QDwb02


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_38/cluster_4_nb_motifs_7.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054658_BOychJ


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_16/cluster_5_node_16_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_37/cluster_4_node_37_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_38/cluster_4_node_38_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_15/cluster_5_node_15_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_39/cluster_4_node_39_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m60_MA0210.1_ara_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m82_MA0233.1_mirr_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_1/cluster_6_node_1_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m147_MA1839.2_GATAd_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m276_MA2312.1_grn_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_2/cluster_6_node_2_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m57_MA0207.1_achi_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m76_MA0227.1_hth_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_3/cluster_6_node_3_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_1/cluster_6_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_6 -name cluster_6 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_1/cluster_6_node_1_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_2/cluster_6_node_2_cat.tf -v 0 -in_format tf -out_format tf -id cluster_6 -name cluster_6 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_2/cluster_6_node_2_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_3/cluster_6_node_3_cat.tf -v 0 -in_format tf -out_format tf -id cluster_6 -name cluster_6 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_3/cluster_6_node_3_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m261_MA2297.1_BtbVII_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m103_MA0254.1_vvl_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m143_MA1702.2_Pdp1_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_18/cluster_5_node_18_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_18/cluster_5_node_18_cat.tf -v 0 -in_format tf -out_format tf -id cluster_5 -name cluster_5 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_18/cluster_5_node_18_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_meme-chip_m13_MEME_ChIP_13_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_meme-chip_m14_MEME_ChIP_14_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_meme-chip_m15_MEME_ChIP_15_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_meme-chip_m20_MEME_ChIP_20_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_meme-chip_m21_MEME_ChIP_21_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_meme-chip_m24_MEME_ChIP_24_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m47_MA0197.3_nub_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_homer_m13_homer_13_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_meme-chip_m11_MEME_ChIP_11_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_meme-chip_m12_MEME_ChIP_12_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_meme-chip_m17_MEME_ChIP_17_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_meme-chip_m16_MEME_ChIP_16_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_meme-chip_m18_MEME_ChIP_18_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_meme-chip_m19_MEME_ChIP_19_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_meme-chip_m23_MEME_ChIP_23_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_17/cluster_5_node_17_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m112_MA0448.1_H2.0_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m24_MA0174.1_Dbx_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_42/cluster_4_node_42_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m45_MA0195.2_Lim3_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m34_MA0184.2_CG9876_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m50_MA0200.2_Pph13_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_41/cluster_4_node_41_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m42_MA0192.1_Hmx_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m99_MA0250.1_unc-4_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m108_MA0444.1_CG34031_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m21_MA0171.1_CG11085_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_40/cluster_4_node_40_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_17/cluster_5_node_17_cat.tf -v 0 -in_format tf -out_format tf -id cluster_5 -name cluster_5 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_17/cluster_5_node_17_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_41/cluster_4_node_41_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_41/cluster_4_node_41_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_42/cluster_4_node_42_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_42/cluster_4_node_42_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_40/cluster_4_node_40_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_40/cluster_4_node_40_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_2/cluster_6_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054659_d2XCbS


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_3/cluster_6_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054659_cHdevD


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_1/cluster_6_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054659_DlOw0A


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_18/cluster_5_nb_motifs_3.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054659_Z75Uq4


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_42/cluster_4_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054659_uOs0KJ


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_40/cluster_4_nb_motifs_4.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054659_AZikKd


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_17/cluster_5_nb_motifs_15.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054659_iWBAG9


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_41/cluster_4_nb_motifs_3.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054659_bu89Jg


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_2/cluster_6_node_2_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_3/cluster_6_node_3_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_1/cluster_6_node_1_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_18/cluster_5_node_18_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_40/cluster_4_node_40_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_17/cluster_5_node_17_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_42/cluster_4_node_42_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_41/cluster_4_node_41_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m67_MA0217.1_caup_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m60_MA0210.1_ara_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m82_MA0233.1_mirr_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_4/cluster_6_node_4_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m54_MA0204.1_Six4_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m95_MA0246.1_so_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_5/cluster_6_node_5_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m202_MA2238.1_GATAe_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m147_MA1839.2_GATAd_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m276_MA2312.1_grn_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_6/cluster_6_node_6_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_4/cluster_6_node_4_cat.tf -v 0 -in_format tf -out_format tf -id cluster_6 -name cluster_6 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_4/cluster_6_node_4_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_5/cluster_6_node_5_cat.tf -v 0 -in_format tf -out_format tf -id cluster_6 -name cluster_6 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_5/cluster_6_node_5_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_6/cluster_6_node_6_cat.tf -v 0 -in_format tf -out_format tf -id cluster_6 -name cluster_6 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_6/cluster_6_node_6_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m5_MA0015.2_Cf2_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m261_MA2297.1_BtbVII_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m103_MA0254.1_vvl_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m143_MA1702.2_Pdp1_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_20/cluster_5_node_20_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_20/cluster_5_node_20_cat.tf -v 0 -in_format tf -out_format tf -id cluster_5 -name cluster_5 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_20/cluster_5_node_20_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_homer_m1_homer_1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_meme-chip_m10_MEME_ChIP_10_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_meme-chip_m25_MEME_ChIP_25_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_meme-chip_m13_MEME_ChIP_13_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_meme-chip_m14_MEME_ChIP_14_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_meme-chip_m15_MEME_ChIP_15_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_meme-chip_m20_MEME_ChIP_20_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_meme-chip_m21_MEME_ChIP_21_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_meme-chip_m24_MEME_ChIP_24_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m47_MA0197.3_nub_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_homer_m13_homer_13_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_meme-chip_m11_MEME_ChIP_11_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_meme-chip_m12_MEME_ChIP_12_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_meme-chip_m17_MEME_ChIP_17_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_meme-chip_m16_MEME_ChIP_16_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_meme-chip_m18_MEME_ChIP_18_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_meme-chip_m19_MEME_ChIP_19_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_meme-chip_m23_MEME_ChIP_23_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_19/cluster_5_node_19_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_19/cluster_5_node_19_cat.tf -v 0 -in_format tf -out_format tf -id cluster_5 -name cluster_5 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_19/cluster_5_node_19_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m97_MA0248.1_tup_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m46_MA0196.1_NK7.1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m64_MA0214.1_bsh_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m25_MA0175.1_lms_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m94_MA0245.1_slou_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_45/cluster_4_node_45_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m81_MA0232.1_lbl_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m106_MA0257.2_zen2_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m39_MA0189.2_E5_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m45_MA0195.2_Lim3_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m34_MA0184.2_CG9876_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m50_MA0200.2_Pph13_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_44/cluster_4_node_44_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m73_MA0224.1_exex_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m75_MA0226.1_hbn_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m100_MA0251.1_unpg_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m29_MA0179.1_CG32532_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m70_MA0220.1_en_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m90_MA0241.1_ro_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m48_MA0198.1_OdsH_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m52_MA0202.1_Rx_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m41_MA0191.1_HGTX_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m17_MA0167.1_Awh_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m31_MA0181.1_Vsx1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m85_MA0236.1_otp_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_43/cluster_4_node_43_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_45/cluster_4_node_45_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_45/cluster_4_node_45_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_44/cluster_4_node_44_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_44/cluster_4_node_44_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_43/cluster_4_node_43_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_43/cluster_4_node_43_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_4/cluster_6_nb_motifs_3.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054700_8ohQuu


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_5/cluster_6_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054700_MtYkWH


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_6/cluster_6_nb_motifs_3.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054700_ZqRKGO


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_20/cluster_5_nb_motifs_4.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054700_kCnQy4


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_19/cluster_5_nb_motifs_18.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054700_4OUjEM


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_45/cluster_4_nb_motifs_5.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054700_wiYH6N


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_44/cluster_4_nb_motifs_6.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054700_bjNt7M


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_43/cluster_4_nb_motifs_12.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054700_Exfuge


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_5/cluster_6_node_5_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_4/cluster_6_node_4_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_6/cluster_6_node_6_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_20/cluster_5_node_20_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_19/cluster_5_node_19_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_44/cluster_4_node_44_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_45/cluster_4_node_45_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_43/cluster_4_node_43_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m23_MA0173.1_CG11617_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_meme-chip_m1_MEME_ChIP_1_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_7/cluster_6_node_7_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m247_MA2283.1_srp_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m202_MA2238.1_GATAe_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m147_MA1839.2_GATAd_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m276_MA2312.1_grn_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_8/cluster_6_node_8_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m101_MA0252.2_vis_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m57_MA0207.1_achi_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m76_MA0227.1_hth_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_9/cluster_6_node_9_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_7/cluster_6_node_7_cat.tf -v 0 -in_format tf -out_format tf -id cluster_6 -name cluster_6 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_7/cluster_6_node_7_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_9/cluster_6_node_9_cat.tf -v 0 -in_format tf -out_format tf -id cluster_6 -name cluster_6 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_9/cluster_6_node_9_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_8/cluster_6_node_8_cat.tf -v 0 -in_format tf -out_format tf -id cluster_6 -name cluster_6 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_8/cluster_6_node_8_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_homer_m1_homer_1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_meme-chip_m10_MEME_ChIP_10_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_meme-chip_m25_MEME_ChIP_25_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_meme-chip_m13_MEME_ChIP_13_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_meme-chip_m14_MEME_ChIP_14_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_meme-chip_m15_MEME_ChIP_15_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_meme-chip_m20_MEME_ChIP_20_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_meme-chip_m21_MEME_ChIP_21_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_meme-chip_m24_MEME_ChIP_24_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m47_MA0197.3_nub_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_homer_m13_homer_13_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_meme-chip_m11_MEME_ChIP_11_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_meme-chip_m12_MEME_ChIP_12_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_meme-chip_m17_MEME_ChIP_17_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_meme-chip_m16_MEME_ChIP_16_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_meme-chip_m18_MEME_ChIP_18_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_meme-chip_m19_MEME_ChIP_19_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_meme-chip_m23_MEME_ChIP_23_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m5_MA0015.2_Cf2_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m261_MA2297.1_BtbVII_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m103_MA0254.1_vvl_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m143_MA1702.2_Pdp1_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_21/cluster_5_node_21_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m65_MA0215.1_btn_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m36_MA0186.1_Dfd_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m53_MA0203.1_Scr_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m13_MA0094.3_Ubx_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m16_MA0166.1_Antp_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m74_MA0225.1_ftz_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m56_MA0206.1_abd-A_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m79_MA0230.1_lab_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_47/cluster_4_node_47_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m42_MA0192.1_Hmx_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m99_MA0250.1_unc-4_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m108_MA0444.1_CG34031_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m21_MA0171.1_CG11085_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m97_MA0248.1_tup_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m46_MA0196.1_NK7.1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m64_MA0214.1_bsh_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m25_MA0175.1_lms_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m94_MA0245.1_slou_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_48/cluster_4_node_48_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_21/cluster_5_node_21_cat.tf -v 0 -in_format tf -out_format tf -id cluster_5 -name cluster_5 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_21/cluster_5_node_21_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m44_MA0194.1_Lim1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m22_MA0172.1_CG11294_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m58_MA0208.1_al_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m28_MA0178.1_CG32105_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m89_MA0240.1_repo_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m73_MA0224.1_exex_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m75_MA0226.1_hbn_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m100_MA0251.1_unpg_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m29_MA0179.1_CG32532_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m70_MA0220.1_en_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m90_MA0241.1_ro_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m48_MA0198.1_OdsH_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m52_MA0202.1_Rx_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m41_MA0191.1_HGTX_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m17_MA0167.1_Awh_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m31_MA0181.1_Vsx1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m85_MA0236.1_otp_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_46/cluster_4_node_46_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_48/cluster_4_node_48_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_48/cluster_4_node_48_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_47/cluster_4_node_47_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_47/cluster_4_node_47_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_46/cluster_4_node_46_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_46/cluster_4_node_46_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_7/cluster_6_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054701_pTTJHq


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_9/cluster_6_nb_motifs_3.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054701_l7J2MK


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_8/cluster_6_nb_motifs_4.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054701_yJxiFP


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_47/cluster_4_nb_motifs_8.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054701_5kgl4z


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_48/cluster_4_nb_motifs_9.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054701_h3UdLH


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_46/cluster_4_nb_motifs_17.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054701_TQLuSc


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_21/cluster_5_nb_motifs_22.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054701_VCNSrG


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_7/cluster_6_node_7_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_9/cluster_6_node_9_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_8/cluster_6_node_8_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_46/cluster_4_node_46_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_21/cluster_5_node_21_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_47/cluster_4_node_47_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_48/cluster_4_node_48_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m49_MA0199.1_Optix_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m54_MA0204.1_Six4_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m95_MA0246.1_so_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_10/cluster_6_node_10_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m101_MA0252.2_vis_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m57_MA0207.1_achi_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m76_MA0227.1_hth_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m49_MA0199.1_Optix_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m54_MA0204.1_Six4_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m95_MA0246.1_so_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_11/cluster_6_node_11_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_10/cluster_6_node_10_cat.tf -v 0 -in_format tf -out_format tf -id cluster_6 -name cluster_6 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_10/cluster_6_node_10_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_11/cluster_6_node_11_cat.tf -v 0 -in_format tf -out_format tf -id cluster_6 -name cluster_6 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_11/cluster_6_node_11_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m15_MA0165.1_Abd-B_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m112_MA0448.1_H2.0_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m24_MA0174.1_Dbx_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_50/cluster_4_node_50_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_50/cluster_4_node_50_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_50/cluster_4_node_50_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m105_MA0256.1_zen_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m59_MA0209.1_ap_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m77_MA0228.1_ind_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m27_MA0177.1_CG18599_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m87_MA0238.1_pb_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m69_MA0219.1_ems_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m71_MA0221.1_eve_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m65_MA0215.1_btn_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m36_MA0186.1_Dfd_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m53_MA0203.1_Scr_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m13_MA0094.3_Ubx_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m16_MA0166.1_Antp_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m74_MA0225.1_ftz_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m56_MA0206.1_abd-A_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m79_MA0230.1_lab_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_49/cluster_4_node_49_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m26_MA0176.1_CG15696_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m44_MA0194.1_Lim1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m22_MA0172.1_CG11294_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m58_MA0208.1_al_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m28_MA0178.1_CG32105_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m89_MA0240.1_repo_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m73_MA0224.1_exex_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m75_MA0226.1_hbn_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m100_MA0251.1_unpg_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m29_MA0179.1_CG32532_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m70_MA0220.1_en_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m90_MA0241.1_ro_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m48_MA0198.1_OdsH_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m52_MA0202.1_Rx_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m41_MA0191.1_HGTX_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m17_MA0167.1_Awh_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m31_MA0181.1_Vsx1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m85_MA0236.1_otp_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_51/cluster_4_node_51_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_49/cluster_4_node_49_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_49/cluster_4_node_49_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_51/cluster_4_node_51_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_51/cluster_4_node_51_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_10/cluster_6_nb_motifs_3.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054702_219JS7


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_11/cluster_6_nb_motifs_6.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054702_aMKxRW


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_50/cluster_4_nb_motifs_3.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054702_VA00ow


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_49/cluster_4_nb_motifs_15.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054702_HgHzIE


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_51/cluster_4_nb_motifs_18.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054702_sgt6qx


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_10/cluster_6_node_10_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_11/cluster_6_node_11_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_50/cluster_4_node_50_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_49/cluster_4_node_49_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_51/cluster_4_node_51_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m284_MA2320.1_Sox100B_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m67_MA0217.1_caup_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m60_MA0210.1_ara_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m82_MA0233.1_mirr_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_12/cluster_6_node_12_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m72_MA0222.2_exd_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m101_MA0252.2_vis_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m57_MA0207.1_achi_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m76_MA0227.1_hth_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m49_MA0199.1_Optix_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m54_MA0204.1_Six4_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m95_MA0246.1_so_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_13/cluster_6_node_13_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m23_MA0173.1_CG11617_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_meme-chip_m1_MEME_ChIP_1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m284_MA2320.1_Sox100B_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m67_MA0217.1_caup_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m60_MA0210.1_ara_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m82_MA0233.1_mirr_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_14/cluster_6_node_14_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_12/cluster_6_node_12_cat.tf -v 0 -in_format tf -out_format tf -id cluster_6 -name cluster_6 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_12/cluster_6_node_12_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_13/cluster_6_node_13_cat.tf -v 0 -in_format tf -out_format tf -id cluster_6 -name cluster_6 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_13/cluster_6_node_13_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_14/cluster_6_node_14_cat.tf -v 0 -in_format tf -out_format tf -id cluster_6 -name cluster_6 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_14/cluster_6_node_14_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m37_MA0187.1_Dll_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m38_MA0188.1_Dr_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_53/cluster_4_node_53_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m18_MA0168.1_B-H1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m19_MA0169.1_B-H2_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m42_MA0192.1_Hmx_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m99_MA0250.1_unc-4_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m108_MA0444.1_CG34031_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m21_MA0171.1_CG11085_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m97_MA0248.1_tup_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m46_MA0196.1_NK7.1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m64_MA0214.1_bsh_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m25_MA0175.1_lms_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m94_MA0245.1_slou_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_52/cluster_4_node_52_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_53/cluster_4_node_53_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_53/cluster_4_node_53_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_52/cluster_4_node_52_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_52/cluster_4_node_52_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m105_MA0256.1_zen_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m59_MA0209.1_ap_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m77_MA0228.1_ind_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m27_MA0177.1_CG18599_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m87_MA0238.1_pb_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m69_MA0219.1_ems_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m71_MA0221.1_eve_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m65_MA0215.1_btn_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m36_MA0186.1_Dfd_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m53_MA0203.1_Scr_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m13_MA0094.3_Ubx_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m16_MA0166.1_Antp_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m74_MA0225.1_ftz_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m56_MA0206.1_abd-A_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m79_MA0230.1_lab_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m26_MA0176.1_CG15696_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m44_MA0194.1_Lim1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m22_MA0172.1_CG11294_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m58_MA0208.1_al_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m28_MA0178.1_CG32105_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m89_MA0240.1_repo_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m73_MA0224.1_exex_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m75_MA0226.1_hbn_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m100_MA0251.1_unpg_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m29_MA0179.1_CG32532_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m70_MA0220.1_en_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m90_MA0241.1_ro_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m48_MA0198.1_OdsH_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m52_MA0202.1_Rx_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m41_MA0191.1_HGTX_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m17_MA0167.1_Awh_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m31_MA0181.1_Vsx1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m85_MA0236.1_otp_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_54/cluster_4_node_54_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_54/cluster_4_node_54_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_54/cluster_4_node_54_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_14/cluster_6_nb_motifs_6.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054703_1pejpg


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_12/cluster_6_nb_motifs_4.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054703_nL21ZR


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_13/cluster_6_nb_motifs_7.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054703_vzlnXB


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_53/cluster_4_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054703_DV5258


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_52/cluster_4_nb_motifs_11.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054703_cqidw0


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_54/cluster_4_nb_motifs_33.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054703_l1ktxI


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_12/cluster_6_node_12_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_14/cluster_6_node_14_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_13/cluster_6_node_13_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_53/cluster_4_node_53_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_52/cluster_4_node_52_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_54/cluster_4_node_54_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m157_MA2193.1_Atf3_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m174_MA2210.1_CrebB_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_7/merged_consensuses/node_1/cluster_7_node_1_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m111_MA0447.1_gt_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m255_MA2291.1_vri_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_7/merged_consensuses/node_2/cluster_7_node_2_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m156_MA2192.1_Atf-2_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m157_MA2193.1_Atf3_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m174_MA2210.1_CrebB_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_7/merged_consensuses/node_3/cluster_7_node_3_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_7/merged_consensuses/node_1/cluster_7_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_7 -name cluster_7 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_7/merged_consensuses/node_1/cluster_7_node_1_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_7/merged_consensuses/node_2/cluster_7_node_2_cat.tf -v 0 -in_format tf -out_format tf -id cluster_7 -name cluster_7 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_7/merged_consensuses/node_2/cluster_7_node_2_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_7/merged_consensuses/node_3/cluster_7_node_3_cat.tf -v 0 -in_format tf -out_format tf -id cluster_7 -name cluster_7 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_7/merged_consensuses/node_3/cluster_7_node_3_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m122_MA0460.1_ttk_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m247_MA2283.1_srp_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m202_MA2238.1_GATAe_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m147_MA1839.2_GATAd_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m276_MA2312.1_grn_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_15/cluster_6_node_15_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_15/cluster_6_node_15_cat.tf -v 0 -in_format tf -out_format tf -id cluster_6 -name cluster_6 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_15/cluster_6_node_15_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m72_MA0222.2_exd_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m101_MA0252.2_vis_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m57_MA0207.1_achi_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m76_MA0227.1_hth_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m49_MA0199.1_Optix_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m54_MA0204.1_Six4_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m95_MA0246.1_so_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m23_MA0173.1_CG11617_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_meme-chip_m1_MEME_ChIP_1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m284_MA2320.1_Sox100B_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m67_MA0217.1_caup_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m60_MA0210.1_ara_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m82_MA0233.1_mirr_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_16/cluster_6_node_16_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_16/cluster_6_node_16_cat.tf -v 0 -in_format tf -out_format tf -id cluster_6 -name cluster_6 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_16/cluster_6_node_16_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m122_MA0460.1_ttk_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m247_MA2283.1_srp_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m202_MA2238.1_GATAe_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m147_MA1839.2_GATAd_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m276_MA2312.1_grn_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m72_MA0222.2_exd_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m101_MA0252.2_vis_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m57_MA0207.1_achi_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m76_MA0227.1_hth_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m49_MA0199.1_Optix_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m54_MA0204.1_Six4_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m95_MA0246.1_so_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m23_MA0173.1_CG11617_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_meme-chip_m1_MEME_ChIP_1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m284_MA2320.1_Sox100B_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m67_MA0217.1_caup_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m60_MA0210.1_ara_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m82_MA0233.1_mirr_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_17/cluster_6_node_17_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m152_MA2188.1_acj6_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m224_MA2260.1_pdm3_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_56/cluster_4_node_56_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_56/cluster_4_node_56_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_56/cluster_4_node_56_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m80_MA0231.1_lbe_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m81_MA0232.1_lbl_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m106_MA0257.2_zen2_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m39_MA0189.2_E5_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m45_MA0195.2_Lim3_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m34_MA0184.2_CG9876_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m50_MA0200.2_Pph13_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_57/cluster_4_node_57_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_17/cluster_6_node_17_cat.tf -v 0 -in_format tf -out_format tf -id cluster_6 -name cluster_6 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_17/cluster_6_node_17_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m20_MA0170.1_C15_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m18_MA0168.1_B-H1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m19_MA0169.1_B-H2_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m42_MA0192.1_Hmx_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m99_MA0250.1_unc-4_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m108_MA0444.1_CG34031_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m21_MA0171.1_CG11085_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m97_MA0248.1_tup_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m46_MA0196.1_NK7.1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m64_MA0214.1_bsh_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m25_MA0175.1_lms_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m94_MA0245.1_slou_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_55/cluster_4_node_55_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_57/cluster_4_node_57_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_57/cluster_4_node_57_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_55/cluster_4_node_55_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_55/cluster_4_node_55_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_7/merged_consensuses/node_2/cluster_7_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054704_CqA2nI


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_7/merged_consensuses/node_3/cluster_7_nb_motifs_3.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054704_FwsPVR


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_7/merged_consensuses/node_1/cluster_7_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054704_yWfN8I


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_15/cluster_6_nb_motifs_5.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054704_N16SdW


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_16/cluster_6_nb_motifs_13.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054704_57gr8H


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_56/cluster_4_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054704_zc0R9Y


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_57/cluster_4_nb_motifs_7.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054704_L1NgTj


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_17/cluster_6_nb_motifs_18.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054704_eeeKWt


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_55/cluster_4_nb_motifs_12.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054704_1iUkQD


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_7/merged_consensuses/node_2/cluster_7_node_2_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_7/merged_consensuses/node_3/cluster_7_node_3_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_7/merged_consensuses/node_1/cluster_7_node_1_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_15/cluster_6_node_15_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_16/cluster_6_node_16_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_57/cluster_4_node_57_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_56/cluster_4_node_56_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_17/cluster_6_node_17_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_55/cluster_4_node_55_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m172_MA2208.1_crc_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m111_MA0447.1_gt_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m255_MA2291.1_vri_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_7/merged_consensuses/node_4/cluster_7_node_4_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m258_MA2294.1_Xrp1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m172_MA2208.1_crc_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m111_MA0447.1_gt_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m255_MA2291.1_vri_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_7/merged_consensuses/node_5/cluster_7_node_5_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m156_MA2192.1_Atf-2_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m157_MA2193.1_Atf3_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m174_MA2210.1_CrebB_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m258_MA2294.1_Xrp1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m172_MA2208.1_crc_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m111_MA0447.1_gt_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m255_MA2291.1_vri_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_7/merged_consensuses/node_6/cluster_7_node_6_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_7/merged_consensuses/node_4/cluster_7_node_4_cat.tf -v 0 -in_format tf -out_format tf -id cluster_7 -name cluster_7 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_7/merged_consensuses/node_4/cluster_7_node_4_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_7/merged_consensuses/node_5/cluster_7_node_5_cat.tf -v 0 -in_format tf -out_format tf -id cluster_7 -name cluster_7 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_7/merged_consensuses/node_5/cluster_7_node_5_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_7/merged_consensuses/node_6/cluster_7_node_6_cat.tf -v 0 -in_format tf -out_format tf -id cluster_7 -name cluster_7 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_7/merged_consensuses/node_6/cluster_7_node_6_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m33_MA0183.1_HHEX_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m78_MA0229.1_inv_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_58/cluster_4_node_58_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m32_MA0182.1_CG4328_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m15_MA0165.1_Abd-B_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m112_MA0448.1_H2.0_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m24_MA0174.1_Dbx_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_59/cluster_4_node_59_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_58/cluster_4_node_58_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_58/cluster_4_node_58_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_59/cluster_4_node_59_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_59/cluster_4_node_59_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m105_MA0256.1_zen_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m59_MA0209.1_ap_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m77_MA0228.1_ind_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m27_MA0177.1_CG18599_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m87_MA0238.1_pb_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m69_MA0219.1_ems_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m71_MA0221.1_eve_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m65_MA0215.1_btn_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m36_MA0186.1_Dfd_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m53_MA0203.1_Scr_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m13_MA0094.3_Ubx_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m16_MA0166.1_Antp_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m74_MA0225.1_ftz_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m56_MA0206.1_abd-A_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m79_MA0230.1_lab_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m26_MA0176.1_CG15696_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m44_MA0194.1_Lim1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m22_MA0172.1_CG11294_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m58_MA0208.1_al_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m28_MA0178.1_CG32105_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m89_MA0240.1_repo_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m73_MA0224.1_exex_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m75_MA0226.1_hbn_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m100_MA0251.1_unpg_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m29_MA0179.1_CG32532_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m70_MA0220.1_en_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m90_MA0241.1_ro_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m48_MA0198.1_OdsH_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m52_MA0202.1_Rx_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m41_MA0191.1_HGTX_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m17_MA0167.1_Awh_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m31_MA0181.1_Vsx1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m85_MA0236.1_otp_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m20_MA0170.1_C15_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m18_MA0168.1_B-H1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m19_MA0169.1_B-H2_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m42_MA0192.1_Hmx_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m99_MA0250.1_unc-4_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m108_MA0444.1_CG34031_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m21_MA0171.1_CG11085_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m97_MA0248.1_tup_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m46_MA0196.1_NK7.1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m64_MA0214.1_bsh_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m25_MA0175.1_lms_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m94_MA0245.1_slou_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_60/cluster_4_node_60_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_60/cluster_4_node_60_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_60/cluster_4_node_60_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_7/merged_consensuses/node_4/cluster_7_nb_motifs_3.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054705_pltcRq


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_7/merged_consensuses/node_6/cluster_7_nb_motifs_7.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054705_4EMZNn


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_7/merged_consensuses/node_5/cluster_7_nb_motifs_4.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054705_sXMrZH


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_58/cluster_4_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054705_bXpakW


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_59/cluster_4_nb_motifs_4.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054705_nE7c4q


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_60/cluster_4_nb_motifs_45.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054705_0XIYkO


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_7/merged_consensuses/node_5/cluster_7_node_5_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_7/merged_consensuses/node_4/cluster_7_node_4_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_7/merged_consensuses/node_6/cluster_7_node_6_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_58/cluster_4_node_58_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_59/cluster_4_node_59_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_60/cluster_4_node_60_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m277_MA2313.1_hng1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m156_MA2192.1_Atf-2_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m157_MA2193.1_Atf3_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m174_MA2210.1_CrebB_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m258_MA2294.1_Xrp1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m172_MA2208.1_crc_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m111_MA0447.1_gt_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m255_MA2291.1_vri_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_7/merged_consensuses/node_7/cluster_7_node_7_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_7/merged_consensuses/node_7/cluster_7_node_7_cat.tf -v 0 -in_format tf -out_format tf -id cluster_7 -name cluster_7 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_7/merged_consensuses/node_7/cluster_7_node_7_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m30_MA0180.1_Vsx2_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m152_MA2188.1_acj6_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m224_MA2260.1_pdm3_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_62/cluster_4_node_62_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m51_MA0201.1_Ptx1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m40_MA0190.1_Gsc_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m83_MA0234.1_oc_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m131_MA0915.2_dve_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m62_MA0212.1_bcd_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_61/cluster_4_node_61_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_62/cluster_4_node_62_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_62/cluster_4_node_62_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_61/cluster_4_node_61_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_61/cluster_4_node_61_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m32_MA0182.1_CG4328_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m15_MA0165.1_Abd-B_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m112_MA0448.1_H2.0_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m24_MA0174.1_Dbx_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m105_MA0256.1_zen_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m59_MA0209.1_ap_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m77_MA0228.1_ind_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m27_MA0177.1_CG18599_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m87_MA0238.1_pb_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m69_MA0219.1_ems_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m71_MA0221.1_eve_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m65_MA0215.1_btn_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m36_MA0186.1_Dfd_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m53_MA0203.1_Scr_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m13_MA0094.3_Ubx_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m16_MA0166.1_Antp_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m74_MA0225.1_ftz_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m56_MA0206.1_abd-A_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m79_MA0230.1_lab_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m26_MA0176.1_CG15696_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m44_MA0194.1_Lim1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m22_MA0172.1_CG11294_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m58_MA0208.1_al_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m28_MA0178.1_CG32105_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m89_MA0240.1_repo_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m73_MA0224.1_exex_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m75_MA0226.1_hbn_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m100_MA0251.1_unpg_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m29_MA0179.1_CG32532_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m70_MA0220.1_en_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m90_MA0241.1_ro_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m48_MA0198.1_OdsH_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m52_MA0202.1_Rx_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m41_MA0191.1_HGTX_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m17_MA0167.1_Awh_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m31_MA0181.1_Vsx1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m85_MA0236.1_otp_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m20_MA0170.1_C15_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m18_MA0168.1_B-H1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m19_MA0169.1_B-H2_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m42_MA0192.1_Hmx_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m99_MA0250.1_unc-4_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m108_MA0444.1_CG34031_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m21_MA0171.1_CG11085_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m97_MA0248.1_tup_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m46_MA0196.1_NK7.1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m64_MA0214.1_bsh_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m25_MA0175.1_lms_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m94_MA0245.1_slou_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_63/cluster_4_node_63_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_63/cluster_4_node_63_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_63/cluster_4_node_63_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_7/merged_consensuses/node_7/cluster_7_nb_motifs_8.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054706_uOh9IS


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_62/cluster_4_nb_motifs_3.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054706_Ssl71A


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_61/cluster_4_nb_motifs_5.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054706_SJ2maG


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_63/cluster_4_nb_motifs_49.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054706_Vm5uG4


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_7/merged_consensuses/node_7/cluster_7_node_7_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_62/cluster_4_node_62_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_61/cluster_4_node_61_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_63/cluster_4_node_63_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m220_MA2256.1_mid_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m223_MA2259.1_org-1_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_8/merged_consensuses/node_1/cluster_8_node_1_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m180_MA2216.1_Doc2_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m220_MA2256.1_mid_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m223_MA2259.1_org-1_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_8/merged_consensuses/node_2/cluster_8_node_2_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m166_MA2202.1_byn_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m180_MA2216.1_Doc2_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m220_MA2256.1_mid_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m223_MA2259.1_org-1_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_8/merged_consensuses/node_3/cluster_8_node_3_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_8/merged_consensuses/node_2/cluster_8_node_2_cat.tf -v 0 -in_format tf -out_format tf -id cluster_8 -name cluster_8 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_8/merged_consensuses/node_2/cluster_8_node_2_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_8/merged_consensuses/node_1/cluster_8_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_8 -name cluster_8 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_8/merged_consensuses/node_1/cluster_8_node_1_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_8/merged_consensuses/node_3/cluster_8_node_3_cat.tf -v 0 -in_format tf -out_format tf -id cluster_8 -name cluster_8 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_8/merged_consensuses/node_3/cluster_8_node_3_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_8/merged_consensuses/node_1/cluster_8_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054707_Q7K5kE


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m119_MA0457.2_PHDP_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m32_MA0182.1_CG4328_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m15_MA0165.1_Abd-B_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m112_MA0448.1_H2.0_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m24_MA0174.1_Dbx_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m105_MA0256.1_zen_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m59_MA0209.1_ap_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m77_MA0228.1_ind_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m27_MA0177.1_CG18599_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m87_MA0238.1_pb_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m69_MA0219.1_ems_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m71_MA0221.1_eve_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m65_MA0215.1_btn_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m36_MA0186.1_Dfd_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m53_MA0203.1_Scr_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m13_MA0094.3_Ubx_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m16_MA0166.1_Antp_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m74_MA0225.1_ftz_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m56_MA0206.1_abd-A_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m79_MA0230.1_lab_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m26_MA0176.1_CG15696_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m44_MA0194.1_Lim1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m22_MA0172.1_CG11294_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m58_MA0208.1_al_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m28_MA0178.1_CG32105_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m89_MA0240.1_repo_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m73_MA0224.1_exex_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m75_MA0226.1_hbn_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m100_MA0251.1_unpg_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m29_MA0179.1_CG32532_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m70_MA0220.1_en_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m90_MA0241.1_ro_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m48_MA0198.1_OdsH_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m52_MA0202.1_Rx_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m41_MA0191.1_HGTX_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m17_MA0167.1_Awh_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m31_MA0181.1_Vsx1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m85_MA0236.1_otp_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m20_MA0170.1_C15_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m18_MA0168.1_B-H1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m19_MA0169.1_B-H2_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m42_MA0192.1_Hmx_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m99_MA0250.1_unc-4_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m108_MA0444.1_CG34031_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m21_MA0171.1_CG11085_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m97_MA0248.1_tup_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m46_MA0196.1_NK7.1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m64_MA0214.1_bsh_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m25_MA0175.1_lms_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m94_MA0245.1_slou_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_64/cluster_4_node_64_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_64/cluster_4_node_64_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_64/cluster_4_node_64_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m80_MA0231.1_lbe_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m81_MA0232.1_lbl_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m106_MA0257.2_zen2_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m39_MA0189.2_E5_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m45_MA0195.2_Lim3_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m34_MA0184.2_CG9876_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m50_MA0200.2_Pph13_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m119_MA0457.2_PHDP_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m32_MA0182.1_CG4328_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m15_MA0165.1_Abd-B_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m112_MA0448.1_H2.0_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m24_MA0174.1_Dbx_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m105_MA0256.1_zen_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m59_MA0209.1_ap_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m77_MA0228.1_ind_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m27_MA0177.1_CG18599_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m87_MA0238.1_pb_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m69_MA0219.1_ems_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m71_MA0221.1_eve_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m65_MA0215.1_btn_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m36_MA0186.1_Dfd_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m53_MA0203.1_Scr_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m13_MA0094.3_Ubx_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m16_MA0166.1_Antp_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m74_MA0225.1_ftz_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m56_MA0206.1_abd-A_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m79_MA0230.1_lab_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m26_MA0176.1_CG15696_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m44_MA0194.1_Lim1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m22_MA0172.1_CG11294_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m58_MA0208.1_al_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m28_MA0178.1_CG32105_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m89_MA0240.1_repo_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m73_MA0224.1_exex_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m75_MA0226.1_hbn_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m100_MA0251.1_unpg_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m29_MA0179.1_CG32532_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m70_MA0220.1_en_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m90_MA0241.1_ro_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m48_MA0198.1_OdsH_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m52_MA0202.1_Rx_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m41_MA0191.1_HGTX_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m17_MA0167.1_Awh_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m31_MA0181.1_Vsx1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m85_MA0236.1_otp_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m20_MA0170.1_C15_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m18_MA0168.1_B-H1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m19_MA0169.1_B-H2_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m42_MA0192.1_Hmx_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m99_MA0250.1_unc-4_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m108_MA0444.1_CG34031_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m21_MA0171.1_CG11085_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m97_MA0248.1_tup_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m46_MA0196.1_NK7.1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m64_MA0214.1_bsh_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m25_MA0175.1_lms_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m94_MA0245.1_slou_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_65/cluster_4_node_65_cat.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_8/merged_consensuses/node_3/cluster_8_nb_motifs_4.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054707_d7F7y7


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m33_MA0183.1_HHEX_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m78_MA0229.1_inv_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m80_MA0231.1_lbe_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m81_MA0232.1_lbl_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m106_MA0257.2_zen2_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m39_MA0189.2_E5_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m45_MA0195.2_Lim3_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m34_MA0184.2_CG9876_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m50_MA0200.2_Pph13_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m119_MA0457.2_PHDP_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m32_MA0182.1_CG4328_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m15_MA0165.1_Abd-B_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m112_MA0448.1_H2.0_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m24_MA0174.1_Dbx_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m105_MA0256.1_zen_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m59_MA0209.1_ap_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m77_MA0228.1_ind_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m27_MA0177.1_CG18599_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m87_MA0238.1_pb_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m69_MA0219.1_ems_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m71_MA0221.1_eve_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m65_MA0215.1_btn_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m36_MA0186.1_Dfd_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m53_MA0203.1_Scr_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m13_MA0094.3_Ubx_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m16_MA0166.1_Antp_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m74_MA0225.1_ftz_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m56_MA0206.1_abd-A_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m79_MA0230.1_lab_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m26_MA0176.1_CG15696_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m44_MA0194.1_Lim1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m22_MA0172.1_CG11294_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m58_MA0208.1_al_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m28_MA0178.1_CG32105_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m89_MA0240.1_repo_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m73_MA0224.1_exex_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m75_MA0226.1_hbn_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m100_MA0251.1_unpg_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m29_MA0179.1_CG32532_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m70_MA0220.1_en_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m90_MA0241.1_ro_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m48_MA0198.1_OdsH_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m52_MA0202.1_Rx_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m41_MA0191.1_HGTX_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m17_MA0167.1_Awh_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m31_MA0181.1_Vsx1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m85_MA0236.1_otp_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m20_MA0170.1_C15_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m18_MA0168.1_B-H1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m19_MA0169.1_B-H2_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m42_MA0192.1_Hmx_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m99_MA0250.1_unc-4_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m108_MA0444.1_CG34031_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m21_MA0171.1_CG11085_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m97_MA0248.1_tup_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m46_MA0196.1_NK7.1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m64_MA0214.1_bsh_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m25_MA0175.1_lms_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m94_MA0245.1_slou_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_66/cluster_4_node_66_cat.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_8/merged_consensuses/node_2/cluster_8_nb_motifs_3.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054707_ywZ7uK


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_65/cluster_4_node_65_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_65/cluster_4_node_65_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_66/cluster_4_node_66_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_66/cluster_4_node_66_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_8/merged_consensuses/node_1/cluster_8_node_1_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_8/merged_consensuses/node_3/cluster_8_node_3_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_64/cluster_4_nb_motifs_50.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054707_XcMMZ9


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_8/merged_consensuses/node_2/cluster_8_node_2_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_65/cluster_4_nb_motifs_57.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054707_0m7DWg


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_66/cluster_4_nb_motifs_59.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054707_iif5Nv


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_64/cluster_4_node_64_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_65/cluster_4_node_65_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_66/cluster_4_node_66_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m264_MA2300.1_CG8319_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m6_MA0016.2_usp_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_8/merged_consensuses/node_4/cluster_8_node_4_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m114_MA0450.1_hkb_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m246_MA2282.1_SREBP_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_8/merged_consensuses/node_5/cluster_8_node_5_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m138_MA1459.2_M1BP_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m278_MA2314.1_hr3_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_8/merged_consensuses/node_6/cluster_8_node_6_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_8/merged_consensuses/node_4/cluster_8_node_4_cat.tf -v 0 -in_format tf -out_format tf -id cluster_8 -name cluster_8 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_8/merged_consensuses/node_4/cluster_8_node_4_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_8/merged_consensuses/node_5/cluster_8_node_5_cat.tf -v 0 -in_format tf -out_format tf -id cluster_8 -name cluster_8 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_8/merged_consensuses/node_5/cluster_8_node_5_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_8/merged_consensuses/node_6/cluster_8_node_6_cat.tf -v 0 -in_format tf -out_format tf -id cluster_8 -name cluster_8 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_8/merged_consensuses/node_6/cluster_8_node_6_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_8/merged_consensuses/node_6/cluster_8_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054708_tJCLwg


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_8/merged_consensuses/node_4/cluster_8_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054708_P2ROjl


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m37_MA0187.1_Dll_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m38_MA0188.1_Dr_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m33_MA0183.1_HHEX_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m78_MA0229.1_inv_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m80_MA0231.1_lbe_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m81_MA0232.1_lbl_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m106_MA0257.2_zen2_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m39_MA0189.2_E5_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m45_MA0195.2_Lim3_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m34_MA0184.2_CG9876_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m50_MA0200.2_Pph13_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m119_MA0457.2_PHDP_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m32_MA0182.1_CG4328_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m15_MA0165.1_Abd-B_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m112_MA0448.1_H2.0_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m24_MA0174.1_Dbx_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m105_MA0256.1_zen_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m59_MA0209.1_ap_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m77_MA0228.1_ind_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m27_MA0177.1_CG18599_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m87_MA0238.1_pb_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m69_MA0219.1_ems_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m71_MA0221.1_eve_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m65_MA0215.1_btn_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m36_MA0186.1_Dfd_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m53_MA0203.1_Scr_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m13_MA0094.3_Ubx_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m16_MA0166.1_Antp_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m74_MA0225.1_ftz_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m56_MA0206.1_abd-A_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m79_MA0230.1_lab_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m26_MA0176.1_CG15696_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m44_MA0194.1_Lim1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m22_MA0172.1_CG11294_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m58_MA0208.1_al_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m28_MA0178.1_CG32105_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m89_MA0240.1_repo_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m73_MA0224.1_exex_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m75_MA0226.1_hbn_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m100_MA0251.1_unpg_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m29_MA0179.1_CG32532_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m70_MA0220.1_en_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m90_MA0241.1_ro_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m48_MA0198.1_OdsH_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m52_MA0202.1_Rx_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m41_MA0191.1_HGTX_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m17_MA0167.1_Awh_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m31_MA0181.1_Vsx1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m85_MA0236.1_otp_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m20_MA0170.1_C15_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m18_MA0168.1_B-H1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m19_MA0169.1_B-H2_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m42_MA0192.1_Hmx_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m99_MA0250.1_unc-4_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m108_MA0444.1_CG34031_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m21_MA0171.1_CG11085_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m97_MA0248.1_tup_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m46_MA0196.1_NK7.1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m64_MA0214.1_bsh_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m25_MA0175.1_lms_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m94_MA0245.1_slou_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_67/cluster_4_node_67_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m30_MA0180.1_Vsx2_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m152_MA2188.1_acj6_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m224_MA2260.1_pdm3_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m37_MA0187.1_Dll_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m38_MA0188.1_Dr_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m33_MA0183.1_HHEX_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m78_MA0229.1_inv_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m80_MA0231.1_lbe_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m81_MA0232.1_lbl_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m106_MA0257.2_zen2_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m39_MA0189.2_E5_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m45_MA0195.2_Lim3_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m34_MA0184.2_CG9876_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m50_MA0200.2_Pph13_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m119_MA0457.2_PHDP_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m32_MA0182.1_CG4328_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m15_MA0165.1_Abd-B_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m112_MA0448.1_H2.0_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m24_MA0174.1_Dbx_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m105_MA0256.1_zen_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m59_MA0209.1_ap_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m77_MA0228.1_ind_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m27_MA0177.1_CG18599_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m87_MA0238.1_pb_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m69_MA0219.1_ems_aligned.tf 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/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m73_MA0224.1_exex_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m75_MA0226.1_hbn_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m100_MA0251.1_unpg_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m29_MA0179.1_CG32532_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m70_MA0220.1_en_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m90_MA0241.1_ro_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m48_MA0198.1_OdsH_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m52_MA0202.1_Rx_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m41_MA0191.1_HGTX_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m17_MA0167.1_Awh_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m31_MA0181.1_Vsx1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m85_MA0236.1_otp_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m20_MA0170.1_C15_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m18_MA0168.1_B-H1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m19_MA0169.1_B-H2_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m42_MA0192.1_Hmx_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m99_MA0250.1_unc-4_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m108_MA0444.1_CG34031_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m21_MA0171.1_CG11085_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m97_MA0248.1_tup_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m46_MA0196.1_NK7.1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m64_MA0214.1_bsh_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m25_MA0175.1_lms_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m94_MA0245.1_slou_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_68/cluster_4_node_68_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_67/cluster_4_node_67_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_67/cluster_4_node_67_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m145_MA1837.2_Elba1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m146_MA1838.2_Elba2_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m30_MA0180.1_Vsx2_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m152_MA2188.1_acj6_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m224_MA2260.1_pdm3_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m37_MA0187.1_Dll_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m38_MA0188.1_Dr_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m33_MA0183.1_HHEX_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m78_MA0229.1_inv_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m80_MA0231.1_lbe_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m81_MA0232.1_lbl_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m106_MA0257.2_zen2_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m39_MA0189.2_E5_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m45_MA0195.2_Lim3_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m34_MA0184.2_CG9876_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m50_MA0200.2_Pph13_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m119_MA0457.2_PHDP_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m32_MA0182.1_CG4328_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m15_MA0165.1_Abd-B_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m112_MA0448.1_H2.0_aligned.tf 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/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m87_MA0238.1_pb_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m69_MA0219.1_ems_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m71_MA0221.1_eve_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m65_MA0215.1_btn_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m36_MA0186.1_Dfd_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m53_MA0203.1_Scr_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m13_MA0094.3_Ubx_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m16_MA0166.1_Antp_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m74_MA0225.1_ftz_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m56_MA0206.1_abd-A_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m79_MA0230.1_lab_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m26_MA0176.1_CG15696_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m44_MA0194.1_Lim1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m22_MA0172.1_CG11294_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m58_MA0208.1_al_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m28_MA0178.1_CG32105_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m89_MA0240.1_repo_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m73_MA0224.1_exex_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m75_MA0226.1_hbn_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m100_MA0251.1_unpg_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m29_MA0179.1_CG32532_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m70_MA0220.1_en_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m90_MA0241.1_ro_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m48_MA0198.1_OdsH_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m52_MA0202.1_Rx_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m41_MA0191.1_HGTX_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m17_MA0167.1_Awh_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m31_MA0181.1_Vsx1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m85_MA0236.1_otp_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m20_MA0170.1_C15_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m18_MA0168.1_B-H1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m19_MA0169.1_B-H2_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m42_MA0192.1_Hmx_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m99_MA0250.1_unc-4_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m108_MA0444.1_CG34031_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m21_MA0171.1_CG11085_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m97_MA0248.1_tup_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m46_MA0196.1_NK7.1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m64_MA0214.1_bsh_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m25_MA0175.1_lms_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m94_MA0245.1_slou_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_69/cluster_4_node_69_cat.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_8/merged_consensuses/node_5/cluster_8_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054708_j9mg9i


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_68/cluster_4_node_68_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_68/cluster_4_node_68_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_69/cluster_4_node_69_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_69/cluster_4_node_69_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_8/merged_consensuses/node_6/cluster_8_node_6_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_8/merged_consensuses/node_4/cluster_8_node_4_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_8/merged_consensuses/node_5/cluster_8_node_5_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_68/cluster_4_nb_motifs_64.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054708_zR1LtQ


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_69/cluster_4_nb_motifs_66.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054708_yVqnBV


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_67/cluster_4_nb_motifs_61.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054708_u44AQV


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_68/cluster_4_node_68_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_69/cluster_4_node_69_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_67/cluster_4_node_67_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m193_MA2229.1_Ets96B_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m194_MA2230.1_Ets97D_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_9/merged_consensuses/node_1/cluster_9_node_1_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m132_MA0916.1_Ets21C_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m192_MA2228.1_Ets65A_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_9/merged_consensuses/node_2/cluster_9_node_2_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m226_MA2262.1_pnt_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m193_MA2229.1_Ets96B_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m194_MA2230.1_Ets97D_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_9/merged_consensuses/node_3/cluster_9_node_3_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_9/merged_consensuses/node_1/cluster_9_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_9 -name cluster_9 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_9/merged_consensuses/node_1/cluster_9_node_1_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m248_MA2284.1_ss_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m114_MA0450.1_hkb_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m246_MA2282.1_SREBP_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_8/merged_consensuses/node_7/cluster_8_node_7_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_9/merged_consensuses/node_2/cluster_9_node_2_cat.tf -v 0 -in_format tf -out_format tf -id cluster_9 -name cluster_9 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_9/merged_consensuses/node_2/cluster_9_node_2_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m264_MA2300.1_CG8319_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m6_MA0016.2_usp_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m138_MA1459.2_M1BP_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m278_MA2314.1_hr3_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_8/merged_consensuses/node_8/cluster_8_node_8_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_9/merged_consensuses/node_3/cluster_9_node_3_cat.tf -v 0 -in_format tf -out_format tf -id cluster_9 -name cluster_9 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_9/merged_consensuses/node_3/cluster_9_node_3_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_8/merged_consensuses/node_7/cluster_8_node_7_cat.tf -v 0 -in_format tf -out_format tf -id cluster_8 -name cluster_8 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_8/merged_consensuses/node_7/cluster_8_node_7_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m166_MA2202.1_byn_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m180_MA2216.1_Doc2_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m220_MA2256.1_mid_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m223_MA2259.1_org-1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m248_MA2284.1_ss_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m114_MA0450.1_hkb_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m246_MA2282.1_SREBP_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_8/merged_consensuses/node_9/cluster_8_node_9_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_8/merged_consensuses/node_8/cluster_8_node_8_cat.tf -v 0 -in_format tf -out_format tf -id cluster_8 -name cluster_8 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_8/merged_consensuses/node_8/cluster_8_node_8_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_8/merged_consensuses/node_9/cluster_8_node_9_cat.tf -v 0 -in_format tf -out_format tf -id cluster_8 -name cluster_8 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_8/merged_consensuses/node_9/cluster_8_node_9_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m84_MA0235.1_onecut_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m145_MA1837.2_Elba1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m146_MA1838.2_Elba2_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m30_MA0180.1_Vsx2_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m152_MA2188.1_acj6_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m224_MA2260.1_pdm3_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m37_MA0187.1_Dll_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m38_MA0188.1_Dr_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m33_MA0183.1_HHEX_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m78_MA0229.1_inv_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m80_MA0231.1_lbe_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m81_MA0232.1_lbl_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m106_MA0257.2_zen2_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m39_MA0189.2_E5_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m45_MA0195.2_Lim3_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m34_MA0184.2_CG9876_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m50_MA0200.2_Pph13_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m119_MA0457.2_PHDP_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m32_MA0182.1_CG4328_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m15_MA0165.1_Abd-B_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m112_MA0448.1_H2.0_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m24_MA0174.1_Dbx_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m105_MA0256.1_zen_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m59_MA0209.1_ap_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m77_MA0228.1_ind_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m27_MA0177.1_CG18599_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m87_MA0238.1_pb_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m69_MA0219.1_ems_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m71_MA0221.1_eve_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m65_MA0215.1_btn_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m36_MA0186.1_Dfd_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m53_MA0203.1_Scr_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m13_MA0094.3_Ubx_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m16_MA0166.1_Antp_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m74_MA0225.1_ftz_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m56_MA0206.1_abd-A_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m79_MA0230.1_lab_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m26_MA0176.1_CG15696_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m44_MA0194.1_Lim1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m22_MA0172.1_CG11294_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m58_MA0208.1_al_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m28_MA0178.1_CG32105_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m89_MA0240.1_repo_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m73_MA0224.1_exex_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m75_MA0226.1_hbn_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-

cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m229_MA2265.1_retn_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m84_MA0235.1_onecut_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m145_MA1837.2_Elba1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m146_MA1838.2_Elba2_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m30_MA0180.1_Vsx2_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m152_MA2188.1_acj6_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m224_MA2260.1_pdm3_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m37_MA0187.1_Dll_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m38_MA0188.1_Dr_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m33_MA0183.1_HHEX_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m78_MA0229.1_inv_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m80_MA0231.1_lbe_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m81_MA0232.1_lbl_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m106_MA0257.2_zen2_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m39_MA0189.2_E5_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m45_MA0195.2_Lim3_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m34_MA0184.2_CG9876_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m50_MA0200.2_Pph13_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m119_MA0457.2_PHDP_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m32_MA0182.1_CG4328_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m15_MA0165.1_Abd-B_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m112_MA0448.1_H2.0_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m24_MA0174.1_Dbx_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m105_MA0256.1_zen_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m59_MA0209.1_ap_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m77_MA0228.1_ind_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m27_MA0177.1_CG18599_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m87_MA0238.1_pb_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m69_MA0219.1_ems_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m71_MA0221.1_eve_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m65_MA0215.1_btn_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m36_MA0186.1_Dfd_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m53_MA0203.1_Scr_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m13_MA0094.3_Ubx_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m16_MA0166.1_Antp_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m74_MA0225.1_ftz_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m56_MA0206.1_abd-A_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m79_MA0230.1_lab_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m26_MA0176.1_CG15696_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m44_MA0194.1_Lim1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m22_MA0172.1_CG11294_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m58_MA0208.1_al_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m28_MA0178.1_CG32105_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m89_MA0240.1_repo_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m73_MA0224.1_exex_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-011.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m100_MA0251.1_unpg_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m29_MA0179.1_CG32532_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m70_MA0220.1_en_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m90_MA0241.1_ro_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m48_MA0198.1_OdsH_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m52_MA0202.1_Rx_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m41_MA0191.1_HGTX_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m17_MA0167.1_Awh_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m31_MA0181.1_Vsx1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m85_MA0236.1_otp_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m20_MA0170.1_C15_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m18_MA0168.1_B-H1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m19_MA0169.1_B-H2_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m42_MA0192.1_Hmx_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m99_MA0250.1_unc-4_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m108_MA0444.1_CG34031_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m21_MA0171.1_CG11085_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m97_MA0248.1_tup_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m46_MA0196.1_NK7.1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m64_MA0214.1_bsh_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m25_MA0175.1_lms_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m94_MA0245.1_slou_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_70/cluster_4_node_70_cat.tf
5-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m75_MA0226.1_hbn_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m100_MA0251.1_unpg_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m29_MA0179.1_CG32532_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m70_MA0220.1_en_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m90_MA0241.1_ro_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m48_MA0198.1_OdsH_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m52_MA0202.1_Rx_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m41_MA0191.1_HGTX_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m17_MA0167.1_Awh_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m31_MA0181.1_Vsx1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m85_MA0236.1_otp_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m20_MA0170.1_C15_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m18_MA0168.1_B-H1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m19_MA0169.1_B-H2_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m42_MA0192.1_Hmx_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m99_MA0250.1_unc-4_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m108_MA0444.1_CG34031_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m21_MA0171.1_CG11085_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m97_MA0248.1_tup_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m46_MA0196.1_NK7.1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m64_MA0214.1_bsh_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m25_MA0175.1_lms_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m94_MA0245.1_slou_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_71/cluster_4_node_71_cat.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_9/merged_consensuses/node_1/cluster_9_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054709_1fD5Hd


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_9/merged_consensuses/node_3/cluster_9_nb_motifs_3.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054709_oER5BW


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_71/cluster_4_node_71_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_71/cluster_4_node_71_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_70/cluster_4_node_70_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_70/cluster_4_node_70_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_9/merged_consensuses/node_2/cluster_9_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054709_hw7hK1


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_8/merged_consensuses/node_7/cluster_8_nb_motifs_3.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054709_vtZh8T


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_8/merged_consensuses/node_8/cluster_8_nb_motifs_4.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054709_QEmVFn


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_8/merged_consensuses/node_9/cluster_8_nb_motifs_7.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054709_kBtyj7


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_9/merged_consensuses/node_3/cluster_9_node_3_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_8/merged_consensuses/node_7/cluster_8_node_7_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_9/merged_consensuses/node_2/cluster_9_node_2_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_9/merged_consensuses/node_1/cluster_9_node_1_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_8/merged_consensuses/node_8/cluster_8_node_8_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_70/cluster_4_nb_motifs_67.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054709_3AA6sQ


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_8/merged_consensuses/node_9/cluster_8_node_9_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_71/cluster_4_nb_motifs_68.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054709_PNcH7b


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_70/cluster_4_node_70_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_71/cluster_4_node_71_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m9_MA0026.1_Eip74EF_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_meme-chip_m4_MEME_ChIP_4_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_9/merged_consensuses/node_5/cluster_9_node_5_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m132_MA0916.1_Ets21C_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m192_MA2228.1_Ets65A_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m226_MA2262.1_pnt_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m193_MA2229.1_Ets96B_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m194_MA2230.1_Ets97D_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_9/merged_consensuses/node_4/cluster_9_node_4_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m260_MA2296.1_aop_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m132_MA0916.1_Ets21C_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m192_MA2228.1_Ets65A_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m226_MA2262.1_pnt_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m193_MA2229.1_Ets96B_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m194_MA2230.1_Ets97D_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_9/merged_consensuses/node_6/cluster_9_node_6_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_9/merged_consensuses/node_5/cluster_9_node_5_cat.tf -v 0 -in_format tf -out_format tf -id cluster_9 -name cluster_9 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_9/merged_consensuses/node_5/cluster_9_node_5_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_9/merged_consensuses/node_4/cluster_9_node_4_cat.tf -v 0 -in_format tf -out_format tf -id cluster_9 -name cluster_9 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_9/merged_consensuses/node_4/cluster_9_node_4_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_9/merged_consensuses/node_6/cluster_9_node_6_cat.tf -v 0 -in_format tf -out_format tf -id cluster_9 -name cluster_9 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_9/merged_consensuses/node_6/cluster_9_node_6_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m264_MA2300.1_CG8319_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m6_MA0016.2_usp_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m138_MA1459.2_M1BP_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m278_MA2314.1_hr3_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m166_MA2202.1_byn_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m180_MA2216.1_Doc2_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m220_MA2256.1_mid_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m223_MA2259.1_org-1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m248_MA2284.1_ss_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m114_MA0450.1_hkb_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m246_MA2282.1_SREBP_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_8/merged_consensuses/node_10/cluster_8_node_10_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_8/merged_consensuses/node_10/cluster_8_node_10_cat.tf -v 0 -in_format tf -out_format tf -id cluster_8 -name cluster_8 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_8/merged_consensuses/node_10/cluster_8_node_10_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m2_MA0011.2_br_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m229_MA2265.1_retn_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m84_MA0235.1_onecut_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m145_MA1837.2_Elba1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m146_MA1838.2_Elba2_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m30_MA0180.1_Vsx2_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m152_MA2188.1_acj6_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m224_MA2260.1_pdm3_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m37_MA0187.1_Dll_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m38_MA0188.1_Dr_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m33_MA0183.1_HHEX_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m78_MA0229.1_inv_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m80_MA0231.1_lbe_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m81_MA0232.1_lbl_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m106_MA0257.2_zen2_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m39_MA0189.2_E5_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m45_MA0195.2_Lim3_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m34_MA0184.2_CG9876_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m50_MA0200.2_Pph13_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m119_MA0457.2_PHDP_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m32_MA0182.1_CG4328_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m15_MA0165.1_Abd-B_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m112_MA0448.1_H2.0_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m24_MA0174.1_Dbx_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m105_MA0256.1_zen_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m59_MA0209.1_ap_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m77_MA0228.1_ind_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m27_MA0177.1_CG18599_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m87_MA0238.1_pb_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m69_MA0219.1_ems_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m71_MA0221.1_eve_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m65_MA0215.1_btn_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m36_MA0186.1_Dfd_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m53_MA0203.1_Scr_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m13_MA0094.3_Ubx_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m16_MA0166.1_Antp_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m74_MA0225.1_ftz_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m56_MA0206.1_abd-A_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m79_MA0230.1_lab_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m26_MA0176.1_CG15696_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m44_MA0194.1_Lim1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m22_MA0172.1_CG11294_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m58_MA0208.1_al_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m28_MA0178.1_CG32105_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m89_MA0240.1_repo_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m73_MA0224.1_exex_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m75_MA0226.1_hbn_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m100_MA0251.1_unpg_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m29_MA0179.1_CG32532_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m70_MA0220.1_en_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m90_MA0241.1_ro_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m48_MA0198.1_OdsH_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m52_MA0202.1_Rx_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m41_MA0191.1_HGTX_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m17_MA0167.1_Awh_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m31_MA0181.1_Vsx1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m85_MA0236.1_otp_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m20_MA0170.1_C15_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m18_MA0168.1_B-H1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m19_MA0169.1_B-H2_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m42_MA0192.1_Hmx_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m99_MA0250.1_unc-4_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m108_MA0444.1_CG34031_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m21_MA0171.1_CG11085_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m97_MA0248.1_tup_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m46_MA0196.1_NK7.1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m64_MA0214.1_bsh_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m25_MA0175.1_lms_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m94_MA0245.1_slou_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_72/cluster_4_node_72_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_72/cluster_4_node_72_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_72/cluster_4_node_72_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_9/merged_consensuses/node_5/cluster_9_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054710_V0WqBR


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_9/merged_consensuses/node_6/cluster_9_nb_motifs_6.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054710_411rAr


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_9/merged_consensuses/node_4/cluster_9_nb_motifs_5.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054710_IUYLxn


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_8/merged_consensuses/node_10/cluster_8_nb_motifs_11.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054710_dosct6


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_72/cluster_4_nb_motifs_69.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054710_zkl9wf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_9/merged_consensuses/node_6/cluster_9_node_6_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_9/merged_consensuses/node_4/cluster_9_node_4_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_9/merged_consensuses/node_5/cluster_9_node_5_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_8/merged_consensuses/node_10/cluster_8_node_10_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_72/cluster_4_node_72_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m141_MA1462.2_vfl_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_meme-chip_m7_MEME_ChIP_7_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_9/merged_consensuses/node_8/cluster_9_node_8_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m137_MA1458.2_Hsf_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_homer_m14_homer_14_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_9/merged_consensuses/node_9/cluster_9_node_9_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_9/merged_consensuses/node_8/cluster_9_node_8_cat.tf -v 0 -in_format tf -out_format tf -id cluster_9 -name cluster_9 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_9/merged_consensuses/node_8/cluster_9_node_8_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_9/merged_consensuses/node_9/cluster_9_node_9_cat.tf -v 0 -in_format tf -out_format tf -id cluster_9 -name cluster_9 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_9/merged_consensuses/node_9/cluster_9_node_9_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m9_MA0026.1_Eip74EF_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_meme-chip_m4_MEME_ChIP_4_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m260_MA2296.1_aop_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m132_MA0916.1_Ets21C_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m192_MA2228.1_Ets65A_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m226_MA2262.1_pnt_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m193_MA2229.1_Ets96B_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m194_MA2230.1_Ets97D_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_9/merged_consensuses/node_7/cluster_9_node_7_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_9/merged_consensuses/node_7/cluster_9_node_7_cat.tf -v 0 -in_format tf -out_format tf -id cluster_9 -name cluster_9 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_9/merged_consensuses/node_7/cluster_9_node_7_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m51_MA0201.1_Ptx1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m40_MA0190.1_Gsc_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m83_MA0234.1_oc_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m131_MA0915.2_dve_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m62_MA0212.1_bcd_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m2_MA0011.2_br_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m229_MA2265.1_retn_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m84_MA0235.1_onecut_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m145_MA1837.2_Elba1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m146_MA1838.2_Elba2_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m30_MA0180.1_Vsx2_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m152_MA2188.1_acj6_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m224_MA2260.1_pdm3_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m37_MA0187.1_Dll_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m38_MA0188.1_Dr_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m33_MA0183.1_HHEX_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m78_MA0229.1_inv_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m80_MA0231.1_lbe_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m81_MA0232.1_lbl_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m106_MA0257.2_zen2_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m39_MA0189.2_E5_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m45_MA0195.2_Lim3_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m34_MA0184.2_CG9876_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m50_MA0200.2_Pph13_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m119_MA0457.2_PHDP_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m32_MA0182.1_CG4328_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m15_MA0165.1_Abd-B_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m112_MA0448.1_H2.0_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m24_MA0174.1_Dbx_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m105_MA0256.1_zen_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m59_MA0209.1_ap_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m77_MA0228.1_ind_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m27_MA0177.1_CG18599_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m87_MA0238.1_pb_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m69_MA0219.1_ems_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m71_MA0221.1_eve_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m65_MA0215.1_btn_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m36_MA0186.1_Dfd_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m53_MA0203.1_Scr_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m13_MA0094.3_Ubx_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m16_MA0166.1_Antp_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m74_MA0225.1_ftz_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m56_MA0206.1_abd-A_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m79_MA0230.1_lab_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m26_MA0176.1_CG15696_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m44_MA0194.1_Lim1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m22_MA0172.1_CG11294_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m58_MA0208.1_al_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m28_MA0178.1_CG32105_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m89_MA0240.1_repo_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m73_MA0224.1_exex_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m75_MA0226.1_hbn_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m100_MA0251.1_unpg_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m29_MA0179.1_CG32532_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m70_MA0220.1_en_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m90_MA0241.1_ro_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m48_MA0198.1_OdsH_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m52_MA0202.1_Rx_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m41_MA0191.1_HGTX_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m17_MA0167.1_Awh_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m31_MA0181.1_Vsx1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m85_MA0236.1_otp_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m20_MA0170.1_C15_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m18_MA0168.1_B-H1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m19_MA0169.1_B-H2_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m42_MA0192.1_Hmx_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m99_MA0250.1_unc-4_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m108_MA0444.1_CG34031_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m21_MA0171.1_CG11085_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m97_MA0248.1_tup_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m46_MA0196.1_NK7.1_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m64_MA0214.1_bsh_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m25_MA0175.1_lms_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m94_MA0245.1_slou_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_73/cluster_4_node_73_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_73/cluster_4_node_73_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_73/cluster_4_node_73_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_9/merged_consensuses/node_8/cluster_9_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054711_MaqjSH


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_9/merged_consensuses/node_9/cluster_9_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054711_XUy7T3


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_9/merged_consensuses/node_7/cluster_9_nb_motifs_8.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054711_uIXDDr


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_9/merged_consensuses/node_7/cluster_9_node_7_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_9/merged_consensuses/node_9/cluster_9_node_9_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_73/cluster_4_nb_motifs_74.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054711_p6B8Ue


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_9/merged_consensuses/node_8/cluster_9_node_8_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_73/cluster_4_node_73_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m126_MA0532.2_Stat92E_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m137_MA1458.2_Hsf_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_homer_m14_homer_14_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_9/merged_consensuses/node_11/cluster_9_node_11_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_9/merged_consensuses/node_11/cluster_9_node_11_cat.tf -v 0 -in_format tf -out_format tf -id cluster_9 -name cluster_9 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_9/merged_consensuses/node_11/cluster_9_node_11_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m9_MA0026.1_Eip74EF_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_meme-chip_m4_MEME_ChIP_4_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m260_MA2296.1_aop_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m132_MA0916.1_Ets21C_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m192_MA2228.1_Ets65A_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m226_MA2262.1_pnt_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m193_MA2229.1_Ets96B_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m194_MA2230.1_Ets97D_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m141_MA1462.2_vfl_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_meme-chip_m7_MEME_ChIP_7_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_9/merged_consensuses/node_10/cluster_9_node_10_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m9_MA0026.1_Eip74EF_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_meme-chip_m4_MEME_ChIP_4_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m260_MA2296.1_aop_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m132_MA0916.1_Ets21C_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m192_MA2228.1_Ets65A_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m226_MA2262.1_pnt_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m193_MA2229.1_Ets96B_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m194_MA2230.1_Ets97D_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m141_MA1462.2_vfl_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_meme-chip_m7_MEME_ChIP_7_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m126_MA0532.2_Stat92E_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/a_peak_motif_cluster_m137_MA1458.2_Hsf_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/oct4_homer_m14_homer_14_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_9/merged_consensuses/node_12/cluster_9_node_12_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_9/merged_consensuses/node_10/cluster_9_node_10_cat.tf -v 0 -in_format tf -out_format tf -id cluster_9 -name cluster_9 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_9/merged_consensuses/node_10/cluster_9_node_10_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_9/merged_consensuses/node_12/cluster_9_node_12_cat.tf -v 0 -in_format tf -out_format tf -id cluster_9 -name cluster_9 -calc sum -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_9/merged_consensuses/node_12/cluster_9_node_12_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_9/merged_consensuses/node_11/cluster_9_nb_motifs_3.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054713_AbiCJO


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_9/merged_consensuses/node_10/cluster_9_nb_motifs_10.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054713_BdqMkw


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_9/merged_consensuses/node_12/cluster_9_nb_motifs_13.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.054713_igMWXq


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_9/merged_consensuses/node_11/cluster_9_node_11_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_9/merged_consensuses/node_10/cluster_9_node_10_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_clusters_information/cluster_9/merged_consensuses/node_12/cluster_9_node_12_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


rm -r /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_pairwise_compa_logos


cp /var/www/html/rsat/public_html/templates_html/display_d3_tree.html /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_logo_tree.html


cp /var/www/html/rsat/public_html/templates_html/display_small_d3_tree.html /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_portable_logo_tree.html


mv /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_temporary.html /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_logo_tree.html


mv /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_temporary_2.html /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_portable_logo_tree.html


/var/www/html/rsat/perl-scripts/text-to-html -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_tables/pairwise_compa_matrix_descriptions.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_html/pairwise_compa_matrix_descriptions.html


/var/www/html/rsat/perl-scripts/text-to-html -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_tables/distance_table.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_tables/distance_table.html


/var/www/html/rsat/perl-scripts/text-to-html -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_tables/alignment_table.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_tables/alignment_table.html


/var/www/html/rsat/perl-scripts/text-to-html -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_tables/clusters.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_tables/clusters.html


/var/www/html/rsat/perl-scripts/text-to-html -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_tables/clusters_motif_names.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_tables/clusters_motif_names.html


mv -f /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_temporary_2.html /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_portable_logo_tree.html


 cat /var/www/html/rsat/R-scripts/heatmap_clusters_by_collection.R | /usr/bin/R --slave --no-save --no-restore --no-environ --args " cluster.counts.file = '/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_tables/clusters_summary_table.tab'; heatmap.table.d3 = '/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_tables/collection_heatmap_tab.tsv'; attributes.list.file = '/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_tables/collection_heatmap_order.tab'; percent.table.file = '/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_tables/clusters_summary_percent_table.tab'; coverage.table.file = '/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_tables/clusters_summary_coverage_contingency_table.tab'; motif.richness.table = '/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_motif_richness.tsv'; coverage.table.d3 = '/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_tables/convergency_heatmap_tab.tsv'; coverage.heatmap.attributes.file = '/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_tables/convergency_heatmap_attributes.tab'; coverage.json.folder = '/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_coverage_json'; heatmap.color.palette = 'YlOrRd'; heatmap.color.classes = '9'; root.motifs.table = '/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_root_motifs_table.tab'; "


cp /var/www/html/rsat/public_html/templates_html/dynamic_heatmap_d3.html /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_dynamic_heatmap.html


mv /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_temporary.html /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_dynamic_heatmap.html


cp /var/www/html/rsat/public_html/templates_html/dynamic_heatmap_d3_and_tables_motif_collection_coverage.html /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_dynamic_coverage_heatmap.html


mv /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_temporary.html /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_dynamic_coverage_heatmap.html
; matrix-clustering  -v 1 -max_matrices 300 -matrix a_peak_motif_cluster $RSAT/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_query_matrices.meme meme -matrix oct4_meme-chip $RSAT/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_second_matrices. transfac -matrix oct4_homer $RSAT/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_third_matrices.transfac transfac -hclust_method average -calc sum -title a_peak_motif -metric_build_tree Ncor -lth w 5 -lth cor 0.6 -lth Ncor 0.4 -quick -label_in_tree name -return json,heatmap -o $RSAT/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering
; Program version       	1.05
; Number of matrices          	300
; Output files
;	heatmap_pdf                 	/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_figures/heatmap.pdf
;	heatmap_collections_attributes	/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_tables/collection_heatmap_order.tab
;	summary_temp                	/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_SUMMARY_TEMP.html
;	clusters_table              	/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_tables/clusters.tab
;	err_log                     	/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_errors.txt
;	nb_clusters_table           	/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_tables/number_of_clusters.tab
;	heatmap_jpg                 	/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_figures/heatmap.jpg
;	percent_table               	/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_tables/clusters_summary_percent_table.tab
;	heatmap_coverage_d3         	/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_tables/convergency_heatmap_tab.tsv
;	central_motifs_IDs_temp     	/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_central_motifs_IDs_temporal.tab
;	consensus_cladogram_json    	/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_trees/tree.json
;	heatmap_collections_d3      	/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_tables/collection_heatmap_tab.tsv
;	distance_table              	/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_tables/distance_table.tab
;	motif_richness_barplot_html 	/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_motif_richness_barplot.html
;	alignment_table             	/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_tables/alignment_table.tab
;	log                         	/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_log.txt
;	clusters_table_motif_names  	/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_tables/clusters_motif_names.tab
;	small_logo_cladogram_html   	/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_portable_logo_tree.html
;	cluster_IDs_names           	/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_cluster_IDs.txt
;	motif_file                  	/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_data/input_motifs_processed.tf
;	matrix_descriptions_html    	/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_html/pairwise_compa_matrix_descriptions.html
;	pairwise_compa              	/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_tables/pairwise_compa.tab
;	alignment_table_html        	/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_tables/alignment_table.html
;	root_motifs                 	/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_cluster_root_motifs.tf
;	clusters_table_motif_names_html	/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_tables/clusters_motif_names.html
;	summary                     	/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_SUMMARY.html
;	Rlog                        	/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_Rlog.txt
;	matrix_descriptions         	/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_tables/pairwise_compa_matrix_descriptions.tab
;	small_forest_export         	/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_small_forest.html
;	reference_compa             	/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_tables/Root_vs_reference_collection_compa.tab
;	ref_collection_tf           	/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_reference_collection.tf
;	html_index                  	/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_html/index.html
;	clusters_table_html         	/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_tables/clusters.html
;	heatmap_coverage_attributes 	/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_tables/convergency_heatmap_attributes.tab
;	int_align                   	/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_tables/intermediate_alignments.tab
;	coverage_table              	/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_tables/clusters_summary_coverage_contingency_table.tab
;	coverage_json_folder        	/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_coverage_json
;	distance_table_html         	/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_tables/distance_table.html
;	logo_cladogram_html         	/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_logo_tree.html
;	radial_tree                 	/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_radial_tree.html
;	prefix                      	/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering
;	internal_nodes_attributes_table	/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_tables/internal_nodes_attributes.tab
;	temp_html                   	/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_temporary.html
;	reference_compa_html        	/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_html/Root_vs_reference_collection_compa.html
;	radial_tree_template        	/var/www/html/rsat/public_html/templates_html/Radial_tree_template.html
;	temp_html_3                 	/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_temporary_3.html
;	dynamic_heatmap_html        	/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_dynamic_heatmap.html
;	root_motifs_table           	/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_root_motifs_table.tab
;	all_concatenated_motifs     	/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_aligned_logos/All_concatenated_motifs.tf
;	central_motifs              	/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_central_motifs_IDs.tab
;	temp_html_2                 	/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_temporary_2.html
;	pairwise_compa_html         	/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_html/pairwise_compa.html
;	archive                     	/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_archive.zip
;	hexa_colors                 	/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_hexa_colors.txt
;	cluster_summary_table       	/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_tables/clusters_summary_table.tab
;	input_matrices              	/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_data/input_motifs_processed.tf
;	dynamic_coverage_heatmap_html	/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_dynamic_coverage_heatmap.html
;	motif_richness_tsv          	/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_motif_richness.tsv
;	central_motifs_tf           	/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_central_motifs_transfac.tf
; Directories
;	output                      	/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1
;	data                        	/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.054439_w0wDG1/matrix-clustering_data
; Host name	rsat
; Job started	2026-05-11.054439
; Job done	2026-05-11.054726
; Seconds	3.47
;	user	3.47
;	system	2.14
;	cuser	389.78
;	csystem	84.85