rsync -ruptl /var/www/html/rsat/perl-scripts/lib/js /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn


rsync -ruptl /var/www/html/rsat/public_html/images/program_icons/matrix-clustering_icons /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_query_matrices.mscan -from mscan -to tf -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_data/ncor_0_8_none_miniatura_motifs_input_motifs_processed_1.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_data/ncor_0_8_none_miniatura_motifs_input_motifs_processed_1.tf -from tf -to transfac -prefix_id ncor_0_8_none_miniatura_motifs -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_data/ncor_0_8_none_miniatura_motifs_input_motifs_processed.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_data/ncor_0_8_none_miniatura_motifs_input_motifs_processed.tf  > /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_data/input_motifs_processed.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_data/input_motifs_processed.tf -split -from tf -to tf -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_data/motif


 cat /var/www/html/rsat/R-scripts/matrix-clustering.R | /usr/bin/R --slave --no-save --no-restore --no-environ --args " infile = '/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_tables/pairwise_compa.tab'; hclust.method = 'average'; description.file = '/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_tables/pairwise_compa_matrix_descriptions.tab'; distance.table = '/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_tables/distance_table.tab'; alignment.file = '/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_tables/alignment_table.tab'; verbosity = 0; metric = 'Ncor'; heatmap.color.palette = 'YlOrRd'; heatmap.color.classes = '9'; export.newick = 0; radial.only = 0; draw.heatmap = 1; draw.consensus = 0; pos.hclust.in.heatmap = 'column'; lthsp = 'cor_0_Ncor_0.8_'; out.prefix = '/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering'; "


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_tables/cluster_1_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_data/cluster_1_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_tables/cluster_2_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_data/cluster_2_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_tables/cluster_3_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_data/cluster_3_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_tables/cluster_4_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_data/cluster_4_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_tables/cluster_5_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_data/cluster_5_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_tables/cluster_6_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_data/cluster_6_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_tables/cluster_7_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_data/cluster_7_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_tables/cluster_8_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_data/cluster_8_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_tables/cluster_9_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_data/cluster_9_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_tables/cluster_10_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_data/cluster_10_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_tables/cluster_11_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_data/cluster_11_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_tables/cluster_12_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_data/cluster_12_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_tables/cluster_13_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_data/cluster_13_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_tables/cluster_14_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_data/cluster_14_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_tables/cluster_15_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_data/cluster_15_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_tables/cluster_16_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_data/cluster_16_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_tables/cluster_17_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_data/cluster_17_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_tables/cluster_19_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_data/cluster_19_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_tables/cluster_18_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_data/cluster_18_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_tables/cluster_20_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_data/cluster_20_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_tables/cluster_21_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_data/cluster_21_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_tables/cluster_22_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_data/cluster_22_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_tables/cluster_23_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_data/cluster_23_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_tables/cluster_24_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_data/cluster_24_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_tables/cluster_25_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_data/cluster_25_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_tables/cluster_26_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_data/cluster_26_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_tables/cluster_27_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_data/cluster_27_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_tables/cluster_28_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_data/cluster_28_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_tables/cluster_29_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_data/cluster_29_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_tables/cluster_30_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_data/cluster_30_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_tables/cluster_31_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_data/cluster_31_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_tables/cluster_32_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_data/cluster_32_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_tables/cluster_33_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_data/cluster_33_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_tables/cluster_34_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_data/cluster_34_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_tables/cluster_35_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_data/cluster_35_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_tables/cluster_36_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_data/cluster_36_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_tables/cluster_37_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_data/cluster_37_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_tables/cluster_38_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_data/cluster_38_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_tables/cluster_39_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_data/cluster_39_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_tables/cluster_40_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_data/cluster_40_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_tables/cluster_41_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_data/cluster_41_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_tables/cluster_43_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_data/cluster_43_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_tables/cluster_42_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_data/cluster_42_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_tables/cluster_44_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_data/cluster_44_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_tables/cluster_45_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_data/cluster_45_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_tables/cluster_46_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_data/cluster_46_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_tables/cluster_47_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_data/cluster_47_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_tables/cluster_48_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_data/cluster_48_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_tables/cluster_49_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_data/cluster_49_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_tables/cluster_50_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_data/cluster_50_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_tables/cluster_51_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_data/cluster_51_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_tables/cluster_52_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_data/cluster_52_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_tables/cluster_53_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_data/cluster_53_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_tables/cluster_54_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_data/cluster_54_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_tables/cluster_55_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_data/cluster_55_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_tables/cluster_56_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_data/cluster_56_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_tables/cluster_57_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_data/cluster_57_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_tables/cluster_58_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_data/cluster_58_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_tables/cluster_59_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_data/cluster_59_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_tables/cluster_60_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_data/cluster_60_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_tables/cluster_61_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_data/cluster_61_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_tables/cluster_62_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_data/cluster_62_transfac_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_data/input_motifs_processed.tf -from tf -to tf -matrix_id_file /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_tables/cluster_63_motif_IDs.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_data/cluster_63_transfac_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/ncor_0_8_none_miniatura_motifs_m14_KAISO_HUMAN.H11MO.0.A_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/ncor_0_8_none_miniatura_motifs_m74_KAISO_HUMAN.H11MO.0.A_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_1/cluster_1_node_1_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/ncor_0_8_none_miniatura_motifs_m17_KLF12_HUMAN.H11MO.0.C_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/ncor_0_8_none_miniatura_motifs_m28_MAZ_HUMAN.H11MO.1.A_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_10/merged_consensuses/node_1/cluster_10_node_1_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/ncor_0_8_none_miniatura_motifs_m32_PATZ1_HUMAN.H11MO.0.C_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/ncor_0_8_none_miniatura_motifs_m68_ZN467_HUMAN.H11MO.0.C_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_11/merged_consensuses/node_1/cluster_11_node_1_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_1/cluster_1_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_1 -name cluster_1 -calc mean -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_1/cluster_1_node_1_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_10/merged_consensuses/node_1/cluster_10_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_10 -name cluster_10 -calc mean -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_10/merged_consensuses/node_1/cluster_10_node_1_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_11/merged_consensuses/node_1/cluster_11_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_11 -name cluster_11 -calc mean -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_11/merged_consensuses/node_1/cluster_11_node_1_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_1/cluster_1_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.153157_YzA8vH


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_10/merged_consensuses/node_1/cluster_10_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.153157_O7mawY


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_11/merged_consensuses/node_1/cluster_11_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.153157_M9uidT


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_1/merged_consensuses/node_1/cluster_1_node_1_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_10/merged_consensuses/node_1/cluster_10_node_1_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_11/merged_consensuses/node_1/cluster_11_node_1_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/ncor_0_8_none_miniatura_motifs_m46_SP2_HUMAN.H11MO.1.B_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/ncor_0_8_none_miniatura_motifs_m17_KLF12_HUMAN.H11MO.0.C_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/ncor_0_8_none_miniatura_motifs_m28_MAZ_HUMAN.H11MO.1.A_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_10/merged_consensuses/node_2/cluster_10_node_2_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/ncor_0_8_none_miniatura_motifs_m27_MAZ_HUMAN.H11MO.0.A_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/ncor_0_8_none_miniatura_motifs_m32_PATZ1_HUMAN.H11MO.0.C_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/ncor_0_8_none_miniatura_motifs_m68_ZN467_HUMAN.H11MO.0.C_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_11/merged_consensuses/node_2/cluster_11_node_2_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_10/merged_consensuses/node_2/cluster_10_node_2_cat.tf -v 0 -in_format tf -out_format tf -id cluster_10 -name cluster_10 -calc mean -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_10/merged_consensuses/node_2/cluster_10_node_2_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_11/merged_consensuses/node_2/cluster_11_node_2_cat.tf -v 0 -in_format tf -out_format tf -id cluster_11 -name cluster_11 -calc mean -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_11/merged_consensuses/node_2/cluster_11_node_2_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_10/merged_consensuses/node_2/cluster_10_nb_motifs_3.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.153158_Hy3csr


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_11/merged_consensuses/node_2/cluster_11_nb_motifs_3.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.153158_dFqCen


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_11/merged_consensuses/node_2/cluster_11_node_2_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_10/merged_consensuses/node_2/cluster_10_node_2_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/ncor_0_8_none_miniatura_motifs_m62_ZN148_HUMAN.H11MO.0.D_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/ncor_0_8_none_miniatura_motifs_m65_ZN281_HUMAN.H11MO.0.A_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_12/merged_consensuses/node_1/cluster_12_node_1_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_12/merged_consensuses/node_1/cluster_12_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_12 -name cluster_12 -calc mean -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_12/merged_consensuses/node_1/cluster_12_node_1_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_12/merged_consensuses/node_1/cluster_12_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.153159_Y5LF3r


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_12/merged_consensuses/node_1/cluster_12_node_1_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/ncor_0_8_none_miniatura_motifs_m18_KLF14_HUMAN.H11MO.0.D_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/ncor_0_8_none_miniatura_motifs_m26_KLF9_HUMAN.H11MO.0.C_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_13/merged_consensuses/node_1/cluster_13_node_1_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/ncor_0_8_none_miniatura_motifs_m44_SP1_HUMAN.H11MO.1.A_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/ncor_0_8_none_miniatura_motifs_m49_SP4_HUMAN.H11MO.1.A_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_14/merged_consensuses/node_1/cluster_14_node_1_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_13/merged_consensuses/node_1/cluster_13_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_13 -name cluster_13 -calc mean -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_13/merged_consensuses/node_1/cluster_13_node_1_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_14/merged_consensuses/node_1/cluster_14_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_14 -name cluster_14 -calc mean -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_14/merged_consensuses/node_1/cluster_14_node_1_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_14/merged_consensuses/node_1/cluster_14_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.153200_V1VAAe


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_13/merged_consensuses/node_1/cluster_13_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.153200_PjY9mj


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_14/merged_consensuses/node_1/cluster_14_node_1_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_13/merged_consensuses/node_1/cluster_13_node_1_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/ncor_0_8_none_miniatura_motifs_m56_VEZF1_HUMAN.H11MO.0.C_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/ncor_0_8_none_miniatura_motifs_m58_WT1_HUMAN.H11MO.0.C_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_15/merged_consensuses/node_1/cluster_15_node_1_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_15/merged_consensuses/node_1/cluster_15_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_15 -name cluster_15 -calc mean -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_15/merged_consensuses/node_1/cluster_15_node_1_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_15/merged_consensuses/node_1/cluster_15_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.153201_593L21


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_15/merged_consensuses/node_1/cluster_15_node_1_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cp /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/ncor_0_8_none_miniatura_motifs_m52_TBX15_HUMAN.H11MO.0.D_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_16/cluster_16_matrices_temp.tf


cp /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/ncor_0_8_none_miniatura_motifs_m9_EGR2_HUMAN.H11MO.0.A_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_17/cluster_17_matrices_temp.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_16/cluster_16_matrices_temp.tf -from tf -to tf  -attr name cluster_16 -attr accession cluster_16 -set_attr merged_AC 'ncor_0_8_none_miniatura_motifs:::TBX15_HUMAN.H11MO.0.D' -set_attr merged_ID 'TBX15_HUMAN.H11MO.0.D' -set_attr type merge -set_attr merge_type mean -set_attr merge_nb 1 -v 1 -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_16/cluster_16_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_17/cluster_17_matrices_temp.tf -from tf -to tf  -attr name cluster_17 -attr accession cluster_17 -set_attr merged_AC 'ncor_0_8_none_miniatura_motifs:::EGR2_HUMAN.H11MO.0.A' -set_attr merged_ID 'EGR2_HUMAN.H11MO.0.A' -set_attr type merge -set_attr merge_type mean -set_attr merge_nb 1 -v 1 -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_17/cluster_17_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_16/cluster_16_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_17/cluster_17_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cp /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/ncor_0_8_none_miniatura_motifs_m19_KLF15_HUMAN.H11MO.0.A_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_18/cluster_18_matrices_temp.tf


cp /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/ncor_0_8_none_miniatura_motifs_m23_KLF4_HUMAN.H11MO.0.A_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_19/cluster_19_matrices_temp.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_18/cluster_18_matrices_temp.tf -from tf -to tf  -attr name cluster_18 -attr accession cluster_18 -set_attr merged_AC 'ncor_0_8_none_miniatura_motifs:::KLF15_HUMAN.H11MO.0.A' -set_attr merged_ID 'KLF15_HUMAN.H11MO.0.A' -set_attr type merge -set_attr merge_type mean -set_attr merge_nb 1 -v 1 -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_18/cluster_18_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_19/cluster_19_matrices_temp.tf -from tf -to tf  -attr name cluster_19 -attr accession cluster_19 -set_attr merged_AC 'ncor_0_8_none_miniatura_motifs:::KLF4_HUMAN.H11MO.0.A' -set_attr merged_ID 'KLF4_HUMAN.H11MO.0.A' -set_attr type merge -set_attr merge_type mean -set_attr merge_nb 1 -v 1 -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_19/cluster_19_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_18/cluster_18_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_19/cluster_19_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cp /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/ncor_0_8_none_miniatura_motifs_m64_ZN263_HUMAN.H11MO.0.A_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_20/cluster_20_matrices_temp.tf


cp /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/ncor_0_8_none_miniatura_motifs_m25_KLF6_HUMAN.H11MO.0.A_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_21/cluster_21_matrices_temp.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/ncor_0_8_none_miniatura_motifs_m15_KAISO_HUMAN.H11MO.1.A_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/ncor_0_8_none_miniatura_motifs_m75_KAISO_HUMAN.H11MO.1.A_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_1/cluster_2_node_1_cat.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_21/cluster_21_matrices_temp.tf -from tf -to tf  -attr name cluster_21 -attr accession cluster_21 -set_attr merged_AC 'ncor_0_8_none_miniatura_motifs:::KLF6_HUMAN.H11MO.0.A' -set_attr merged_ID 'KLF6_HUMAN.H11MO.0.A' -set_attr type merge -set_attr merge_type mean -set_attr merge_nb 1 -v 1 -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_21/cluster_21_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_20/cluster_20_matrices_temp.tf -from tf -to tf  -attr name cluster_20 -attr accession cluster_20 -set_attr merged_AC 'ncor_0_8_none_miniatura_motifs:::ZN263_HUMAN.H11MO.0.A' -set_attr merged_ID 'ZN263_HUMAN.H11MO.0.A' -set_attr type merge -set_attr merge_type mean -set_attr merge_nb 1 -v 1 -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_20/cluster_20_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_1/cluster_2_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_2 -name cluster_2 -calc mean -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_1/cluster_2_node_1_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_1/cluster_2_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.153204_XgaM2Y


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_21/cluster_21_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_20/cluster_20_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_2/merged_consensuses/node_1/cluster_2_node_1_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cp /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/ncor_0_8_none_miniatura_motifs_m20_KLF16_HUMAN.H11MO.0.D_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_22/cluster_22_matrices_temp.tf


cp /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/ncor_0_8_none_miniatura_motifs_m43_SP1_HUMAN.H11MO.0.A_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_23/cluster_23_matrices_temp.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_22/cluster_22_matrices_temp.tf -from tf -to tf  -attr name cluster_22 -attr accession cluster_22 -set_attr merged_AC 'ncor_0_8_none_miniatura_motifs:::KLF16_HUMAN.H11MO.0.D' -set_attr merged_ID 'KLF16_HUMAN.H11MO.0.D' -set_attr type merge -set_attr merge_type mean -set_attr merge_nb 1 -v 1 -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_22/cluster_22_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_23/cluster_23_matrices_temp.tf -from tf -to tf  -attr name cluster_23 -attr accession cluster_23 -set_attr merged_AC 'ncor_0_8_none_miniatura_motifs:::SP1_HUMAN.H11MO.0.A' -set_attr merged_ID 'SP1_HUMAN.H11MO.0.A' -set_attr type merge -set_attr merge_type mean -set_attr merge_nb 1 -v 1 -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_23/cluster_23_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_22/cluster_22_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_23/cluster_23_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cp /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/ncor_0_8_none_miniatura_motifs_m80_REST_m4_GM12878_encode_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_24/cluster_24_matrices_temp.tf


cp /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/ncor_0_8_none_miniatura_motifs_m83_REST_m9_HTB-11_encode_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_25/cluster_25_matrices_temp.tf


cp /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/ncor_0_8_none_miniatura_motifs_m53_TBX1_HUMAN.H11MO.0.D_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_26/cluster_26_matrices_temp.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_25/cluster_25_matrices_temp.tf -from tf -to tf  -attr name cluster_25 -attr accession cluster_25 -set_attr merged_AC 'ncor_0_8_none_miniatura_motifs:::REST_m9_HTB-11_encode' -set_attr merged_ID 'REST_m9_HTB-11_encode' -set_attr type merge -set_attr merge_type mean -set_attr merge_nb 1 -v 1 -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_25/cluster_25_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_24/cluster_24_matrices_temp.tf -from tf -to tf  -attr name cluster_24 -attr accession cluster_24 -set_attr merged_AC 'ncor_0_8_none_miniatura_motifs:::REST_m4_GM12878_encode' -set_attr merged_ID 'REST_m4_GM12878_encode' -set_attr type merge -set_attr merge_type mean -set_attr merge_nb 1 -v 1 -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_24/cluster_24_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_26/cluster_26_matrices_temp.tf -from tf -to tf  -attr name cluster_26 -attr accession cluster_26 -set_attr merged_AC 'ncor_0_8_none_miniatura_motifs:::TBX1_HUMAN.H11MO.0.D' -set_attr merged_ID 'TBX1_HUMAN.H11MO.0.D' -set_attr type merge -set_attr merge_type mean -set_attr merge_nb 1 -v 1 -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_26/cluster_26_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_25/cluster_25_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_26/cluster_26_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_24/cluster_24_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cp /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/ncor_0_8_none_miniatura_motifs_m57_VEZF1_HUMAN.H11MO.1.C_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_28/cluster_28_matrices_temp.tf


cp /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/ncor_0_8_none_miniatura_motifs_m33_PATZ1_HUMAN.H11MO.1.C_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_27/cluster_27_matrices_temp.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_28/cluster_28_matrices_temp.tf -from tf -to tf  -attr name cluster_28 -attr accession cluster_28 -set_attr merged_AC 'ncor_0_8_none_miniatura_motifs:::VEZF1_HUMAN.H11MO.1.C' -set_attr merged_ID 'VEZF1_HUMAN.H11MO.1.C' -set_attr type merge -set_attr merge_type mean -set_attr merge_nb 1 -v 1 -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_28/cluster_28_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_27/cluster_27_matrices_temp.tf -from tf -to tf  -attr name cluster_27 -attr accession cluster_27 -set_attr merged_AC 'ncor_0_8_none_miniatura_motifs:::PATZ1_HUMAN.H11MO.1.C' -set_attr merged_ID 'PATZ1_HUMAN.H11MO.1.C' -set_attr type merge -set_attr merge_type mean -set_attr merge_nb 1 -v 1 -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_27/cluster_27_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_28/cluster_28_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_27/cluster_27_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cp /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/ncor_0_8_none_miniatura_motifs_m59_ZBT17_HUMAN.H11MO.0.A_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_29/cluster_29_matrices_temp.tf


cp /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/ncor_0_8_none_miniatura_motifs_m11_EGR4_HUMAN.H11MO.0.D_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_30/cluster_30_matrices_temp.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/ncor_0_8_none_miniatura_motifs_m16_KAISO_HUMAN.H11MO.2.A_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/ncor_0_8_none_miniatura_motifs_m76_KAISO_HUMAN.H11MO.2.A_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_1/cluster_3_node_1_cat.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_29/cluster_29_matrices_temp.tf -from tf -to tf  -attr name cluster_29 -attr accession cluster_29 -set_attr merged_AC 'ncor_0_8_none_miniatura_motifs:::ZBT17_HUMAN.H11MO.0.A' -set_attr merged_ID 'ZBT17_HUMAN.H11MO.0.A' -set_attr type merge -set_attr merge_type mean -set_attr merge_nb 1 -v 1 -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_29/cluster_29_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_30/cluster_30_matrices_temp.tf -from tf -to tf  -attr name cluster_30 -attr accession cluster_30 -set_attr merged_AC 'ncor_0_8_none_miniatura_motifs:::EGR4_HUMAN.H11MO.0.D' -set_attr merged_ID 'EGR4_HUMAN.H11MO.0.D' -set_attr type merge -set_attr merge_type mean -set_attr merge_nb 1 -v 1 -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_30/cluster_30_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_1/cluster_3_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_3 -name cluster_3 -calc mean -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_1/cluster_3_node_1_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_30/cluster_30_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_1/cluster_3_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.153208_MinWbO


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_29/cluster_29_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_3/merged_consensuses/node_1/cluster_3_node_1_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cp /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/ncor_0_8_none_miniatura_motifs_m63_ZN219_HUMAN.H11MO.0.D_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_31/cluster_31_matrices_temp.tf


cp /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/ncor_0_8_none_miniatura_motifs_m69_ZN740_HUMAN.H11MO.0.D_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_32/cluster_32_matrices_temp.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_31/cluster_31_matrices_temp.tf -from tf -to tf  -attr name cluster_31 -attr accession cluster_31 -set_attr merged_AC 'ncor_0_8_none_miniatura_motifs:::ZN219_HUMAN.H11MO.0.D' -set_attr merged_ID 'ZN219_HUMAN.H11MO.0.D' -set_attr type merge -set_attr merge_type mean -set_attr merge_nb 1 -v 1 -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_31/cluster_31_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_32/cluster_32_matrices_temp.tf -from tf -to tf  -attr name cluster_32 -attr accession cluster_32 -set_attr merged_AC 'ncor_0_8_none_miniatura_motifs:::ZN740_HUMAN.H11MO.0.D' -set_attr merged_ID 'ZN740_HUMAN.H11MO.0.D' -set_attr type merge -set_attr merge_type mean -set_attr merge_nb 1 -v 1 -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_32/cluster_32_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_31/cluster_31_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_32/cluster_32_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cp /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/ncor_0_8_none_miniatura_motifs_m77_REST_m1_GM12878_encode_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_34/cluster_34_matrices_temp.tf


cp /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/ncor_0_8_none_miniatura_motifs_m82_REST_m8_HeLa-S3_encode_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_33/cluster_33_matrices_temp.tf


cp /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/ncor_0_8_none_miniatura_motifs_m42_SALL4_HUMAN.H11MO.0.B_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_35/cluster_35_matrices_temp.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_33/cluster_33_matrices_temp.tf -from tf -to tf  -attr name cluster_33 -attr accession cluster_33 -set_attr merged_AC 'ncor_0_8_none_miniatura_motifs:::REST_m8_HeLa-S3_encode' -set_attr merged_ID 'REST_m8_HeLa-S3_encode' -set_attr type merge -set_attr merge_type mean -set_attr merge_nb 1 -v 1 -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_33/cluster_33_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_34/cluster_34_matrices_temp.tf -from tf -to tf  -attr name cluster_34 -attr accession cluster_34 -set_attr merged_AC 'ncor_0_8_none_miniatura_motifs:::REST_m1_GM12878_encode' -set_attr merged_ID 'REST_m1_GM12878_encode' -set_attr type merge -set_attr merge_type mean -set_attr merge_nb 1 -v 1 -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_34/cluster_34_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_35/cluster_35_matrices_temp.tf -from tf -to tf  -attr name cluster_35 -attr accession cluster_35 -set_attr merged_AC 'ncor_0_8_none_miniatura_motifs:::SALL4_HUMAN.H11MO.0.B' -set_attr merged_ID 'SALL4_HUMAN.H11MO.0.B' -set_attr type merge -set_attr merge_type mean -set_attr merge_nb 1 -v 1 -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_35/cluster_35_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_33/cluster_33_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_34/cluster_34_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_35/cluster_35_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cp /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/ncor_0_8_none_miniatura_motifs_m1_AP2B_HUMAN.H11MO.0.B_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_36/cluster_36_matrices_temp.tf


cp /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/ncor_0_8_none_miniatura_motifs_m2_AP2D_HUMAN.H11MO.0.D_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_37/cluster_37_matrices_temp.tf


cp /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/ncor_0_8_none_miniatura_motifs_m37_PURA_HUMAN.H11MO.0.D_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_38/cluster_38_matrices_temp.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_37/cluster_37_matrices_temp.tf -from tf -to tf  -attr name cluster_37 -attr accession cluster_37 -set_attr merged_AC 'ncor_0_8_none_miniatura_motifs:::AP2D_HUMAN.H11MO.0.D' -set_attr merged_ID 'AP2D_HUMAN.H11MO.0.D' -set_attr type merge -set_attr merge_type mean -set_attr merge_nb 1 -v 1 -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_37/cluster_37_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_38/cluster_38_matrices_temp.tf -from tf -to tf  -attr name cluster_38 -attr accession cluster_38 -set_attr merged_AC 'ncor_0_8_none_miniatura_motifs:::PURA_HUMAN.H11MO.0.D' -set_attr merged_ID 'PURA_HUMAN.H11MO.0.D' -set_attr type merge -set_attr merge_type mean -set_attr merge_nb 1 -v 1 -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_38/cluster_38_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_36/cluster_36_matrices_temp.tf -from tf -to tf  -attr name cluster_36 -attr accession cluster_36 -set_attr merged_AC 'ncor_0_8_none_miniatura_motifs:::AP2B_HUMAN.H11MO.0.B' -set_attr merged_ID 'AP2B_HUMAN.H11MO.0.B' -set_attr type merge -set_attr merge_type mean -set_attr merge_nb 1 -v 1 -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_36/cluster_36_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_37/cluster_37_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_36/cluster_36_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_38/cluster_38_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cp /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/ncor_0_8_none_miniatura_motifs_m67_ZN341_HUMAN.H11MO.0.C_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_39/cluster_39_matrices_temp.tf


cp /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/ncor_0_8_none_miniatura_motifs_m70_ZN770_HUMAN.H11MO.0.C_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_40/cluster_40_matrices_temp.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_39/cluster_39_matrices_temp.tf -from tf -to tf  -attr name cluster_39 -attr accession cluster_39 -set_attr merged_AC 'ncor_0_8_none_miniatura_motifs:::ZN341_HUMAN.H11MO.0.C' -set_attr merged_ID 'ZN341_HUMAN.H11MO.0.C' -set_attr type merge -set_attr merge_type mean -set_attr merge_nb 1 -v 1 -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_39/cluster_39_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/ncor_0_8_none_miniatura_motifs_m84_REST_m11_known_matrix_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/ncor_0_8_none_miniatura_motifs_m87_REST_m14_known_matrix_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_2/cluster_4_node_2_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/ncor_0_8_none_miniatura_motifs_m38_REST_HUMAN.H11MO.0.A_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/ncor_0_8_none_miniatura_motifs_m73_REST_HUMAN.H11MO.0.A_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_1/cluster_4_node_1_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/ncor_0_8_none_miniatura_motifs_m38_REST_HUMAN.H11MO.0.A_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/ncor_0_8_none_miniatura_motifs_m73_REST_HUMAN.H11MO.0.A_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/ncor_0_8_none_miniatura_motifs_m84_REST_m11_known_matrix_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/ncor_0_8_none_miniatura_motifs_m87_REST_m14_known_matrix_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_3/cluster_4_node_3_cat.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_40/cluster_40_matrices_temp.tf -from tf -to tf  -attr name cluster_40 -attr accession cluster_40 -set_attr merged_AC 'ncor_0_8_none_miniatura_motifs:::ZN770_HUMAN.H11MO.0.C' -set_attr merged_ID 'ZN770_HUMAN.H11MO.0.C' -set_attr type merge -set_attr merge_type mean -set_attr merge_nb 1 -v 1 -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_40/cluster_40_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_1/cluster_4_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc mean -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_1/cluster_4_node_1_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_2/cluster_4_node_2_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc mean -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_2/cluster_4_node_2_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_3/cluster_4_node_3_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc mean -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_3/cluster_4_node_3_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_40/cluster_40_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_39/cluster_39_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_3/cluster_4_nb_motifs_4.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.153212_4pUE1a


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_2/cluster_4_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.153212_qGw29m


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_1/cluster_4_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.153212_OGZSNb


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_1/cluster_4_node_1_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_3/cluster_4_node_3_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_2/cluster_4_node_2_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cp /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/ncor_0_8_none_miniatura_motifs_m51_TAF1_HUMAN.H11MO.0.A_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_41/cluster_41_matrices_temp.tf


cp /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/ncor_0_8_none_miniatura_motifs_m72_ZSC22_HUMAN.H11MO.0.C_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_42/cluster_42_matrices_temp.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_41/cluster_41_matrices_temp.tf -from tf -to tf  -attr name cluster_41 -attr accession cluster_41 -set_attr merged_AC 'ncor_0_8_none_miniatura_motifs:::TAF1_HUMAN.H11MO.0.A' -set_attr merged_ID 'TAF1_HUMAN.H11MO.0.A' -set_attr type merge -set_attr merge_type mean -set_attr merge_nb 1 -v 1 -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_41/cluster_41_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/ncor_0_8_none_miniatura_motifs_m85_REST_m12_known_matrix_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/ncor_0_8_none_miniatura_motifs_m38_REST_HUMAN.H11MO.0.A_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/ncor_0_8_none_miniatura_motifs_m73_REST_HUMAN.H11MO.0.A_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/ncor_0_8_none_miniatura_motifs_m84_REST_m11_known_matrix_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/ncor_0_8_none_miniatura_motifs_m87_REST_m14_known_matrix_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_4/cluster_4_node_4_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/ncor_0_8_none_miniatura_motifs_m86_REST_m13_known_matrix_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/ncor_0_8_none_miniatura_motifs_m85_REST_m12_known_matrix_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/ncor_0_8_none_miniatura_motifs_m38_REST_HUMAN.H11MO.0.A_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/ncor_0_8_none_miniatura_motifs_m73_REST_HUMAN.H11MO.0.A_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/ncor_0_8_none_miniatura_motifs_m84_REST_m11_known_matrix_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/ncor_0_8_none_miniatura_motifs_m87_REST_m14_known_matrix_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_5/cluster_4_node_5_cat.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_42/cluster_42_matrices_temp.tf -from tf -to tf  -attr name cluster_42 -attr accession cluster_42 -set_attr merged_AC 'ncor_0_8_none_miniatura_motifs:::ZSC22_HUMAN.H11MO.0.C' -set_attr merged_ID 'ZSC22_HUMAN.H11MO.0.C' -set_attr type merge -set_attr merge_type mean -set_attr merge_nb 1 -v 1 -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_42/cluster_42_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_4/cluster_4_node_4_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc mean -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_4/cluster_4_node_4_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_5/cluster_4_node_5_cat.tf -v 0 -in_format tf -out_format tf -id cluster_4 -name cluster_4 -calc mean -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_5/cluster_4_node_5_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_41/cluster_41_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_5/cluster_4_nb_motifs_6.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.153213_oXBEoO


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_42/cluster_42_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_4/cluster_4_nb_motifs_5.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.153213_oaGvHD


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_5/cluster_4_node_5_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_4/merged_consensuses/node_4/cluster_4_node_4_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cp /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/ncor_0_8_none_miniatura_motifs_m41_RXRA_HUMAN.H11MO.0.A_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_43/cluster_43_matrices_temp.tf


cp /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/ncor_0_8_none_miniatura_motifs_m61_ZFX_HUMAN.H11MO.1.A_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_44/cluster_44_matrices_temp.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_44/cluster_44_matrices_temp.tf -from tf -to tf  -attr name cluster_44 -attr accession cluster_44 -set_attr merged_AC 'ncor_0_8_none_miniatura_motifs:::ZFX_HUMAN.H11MO.1.A' -set_attr merged_ID 'ZFX_HUMAN.H11MO.1.A' -set_attr type merge -set_attr merge_type mean -set_attr merge_nb 1 -v 1 -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_44/cluster_44_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_43/cluster_43_matrices_temp.tf -from tf -to tf  -attr name cluster_43 -attr accession cluster_43 -set_attr merged_AC 'ncor_0_8_none_miniatura_motifs:::RXRA_HUMAN.H11MO.0.A' -set_attr merged_ID 'RXRA_HUMAN.H11MO.0.A' -set_attr type merge -set_attr merge_type mean -set_attr merge_nb 1 -v 1 -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_43/cluster_43_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_43/cluster_43_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_44/cluster_44_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cp /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/ncor_0_8_none_miniatura_motifs_m60_ZF64A_HUMAN.H11MO.0.D_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_45/cluster_45_matrices_temp.tf


cp /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/ncor_0_8_none_miniatura_motifs_m66_ZN320_HUMAN.H11MO.0.C_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_46/cluster_46_matrices_temp.tf


cp /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/ncor_0_8_none_miniatura_motifs_m36_PROX1_HUMAN.H11MO.0.D_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_47/cluster_47_matrices_temp.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_45/cluster_45_matrices_temp.tf -from tf -to tf  -attr name cluster_45 -attr accession cluster_45 -set_attr merged_AC 'ncor_0_8_none_miniatura_motifs:::ZF64A_HUMAN.H11MO.0.D' -set_attr merged_ID 'ZF64A_HUMAN.H11MO.0.D' -set_attr type merge -set_attr merge_type mean -set_attr merge_nb 1 -v 1 -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_45/cluster_45_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_46/cluster_46_matrices_temp.tf -from tf -to tf  -attr name cluster_46 -attr accession cluster_46 -set_attr merged_AC 'ncor_0_8_none_miniatura_motifs:::ZN320_HUMAN.H11MO.0.C' -set_attr merged_ID 'ZN320_HUMAN.H11MO.0.C' -set_attr type merge -set_attr merge_type mean -set_attr merge_nb 1 -v 1 -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_46/cluster_46_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_47/cluster_47_matrices_temp.tf -from tf -to tf  -attr name cluster_47 -attr accession cluster_47 -set_attr merged_AC 'ncor_0_8_none_miniatura_motifs:::PROX1_HUMAN.H11MO.0.D' -set_attr merged_ID 'PROX1_HUMAN.H11MO.0.D' -set_attr type merge -set_attr merge_type mean -set_attr merge_nb 1 -v 1 -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_47/cluster_47_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_47/cluster_47_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_46/cluster_46_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_45/cluster_45_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cp /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/ncor_0_8_none_miniatura_motifs_m81_REST_m5_HepG2_encode_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_48/cluster_48_matrices_temp.tf


cp /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/ncor_0_8_none_miniatura_motifs_m29_MBD2_HUMAN.H11MO.0.B_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_49/cluster_49_matrices_temp.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/ncor_0_8_none_miniatura_motifs_m4_E2F1_HUMAN.H11MO.0.A_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/ncor_0_8_none_miniatura_motifs_m54_TFDP1_HUMAN.H11MO.0.C_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_1/cluster_5_node_1_cat.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_48/cluster_48_matrices_temp.tf -from tf -to tf  -attr name cluster_48 -attr accession cluster_48 -set_attr merged_AC 'ncor_0_8_none_miniatura_motifs:::REST_m5_HepG2_encode' -set_attr merged_ID 'REST_m5_HepG2_encode' -set_attr type merge -set_attr merge_type mean -set_attr merge_nb 1 -v 1 -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_48/cluster_48_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_49/cluster_49_matrices_temp.tf -from tf -to tf  -attr name cluster_49 -attr accession cluster_49 -set_attr merged_AC 'ncor_0_8_none_miniatura_motifs:::MBD2_HUMAN.H11MO.0.B' -set_attr merged_ID 'MBD2_HUMAN.H11MO.0.B' -set_attr type merge -set_attr merge_type mean -set_attr merge_nb 1 -v 1 -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_49/cluster_49_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_1/cluster_5_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_5 -name cluster_5 -calc mean -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_1/cluster_5_node_1_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_1/cluster_5_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.153216_D1MBpM


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_48/cluster_48_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_49/cluster_49_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_1/cluster_5_node_1_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cp /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/ncor_0_8_none_miniatura_motifs_m78_REST_m2_U87_encode_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_50/cluster_50_matrices_temp.tf


cp /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/ncor_0_8_none_miniatura_motifs_m12_FLI1_HUMAN.H11MO.0.A_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_51/cluster_51_matrices_temp.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/ncor_0_8_none_miniatura_motifs_m5_E2F4_HUMAN.H11MO.0.A_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/ncor_0_8_none_miniatura_motifs_m4_E2F1_HUMAN.H11MO.0.A_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/ncor_0_8_none_miniatura_motifs_m54_TFDP1_HUMAN.H11MO.0.C_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_2/cluster_5_node_2_cat.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_51/cluster_51_matrices_temp.tf -from tf -to tf  -attr name cluster_51 -attr accession cluster_51 -set_attr merged_AC 'ncor_0_8_none_miniatura_motifs:::FLI1_HUMAN.H11MO.0.A' -set_attr merged_ID 'FLI1_HUMAN.H11MO.0.A' -set_attr type merge -set_attr merge_type mean -set_attr merge_nb 1 -v 1 -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_51/cluster_51_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_50/cluster_50_matrices_temp.tf -from tf -to tf  -attr name cluster_50 -attr accession cluster_50 -set_attr merged_AC 'ncor_0_8_none_miniatura_motifs:::REST_m2_U87_encode' -set_attr merged_ID 'REST_m2_U87_encode' -set_attr type merge -set_attr merge_type mean -set_attr merge_nb 1 -v 1 -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_50/cluster_50_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_2/cluster_5_node_2_cat.tf -v 0 -in_format tf -out_format tf -id cluster_5 -name cluster_5 -calc mean -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_2/cluster_5_node_2_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_2/cluster_5_nb_motifs_3.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.153217_Xna6b3


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_51/cluster_51_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_50/cluster_50_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_5/merged_consensuses/node_2/cluster_5_node_2_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cp /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/ncor_0_8_none_miniatura_motifs_m50_SPIC_HUMAN.H11MO.0.D_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_52/cluster_52_matrices_temp.tf


cp /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/ncor_0_8_none_miniatura_motifs_m35_PLAG1_HUMAN.H11MO.0.D_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_53/cluster_53_matrices_temp.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_52/cluster_52_matrices_temp.tf -from tf -to tf  -attr name cluster_52 -attr accession cluster_52 -set_attr merged_AC 'ncor_0_8_none_miniatura_motifs:::SPIC_HUMAN.H11MO.0.D' -set_attr merged_ID 'SPIC_HUMAN.H11MO.0.D' -set_attr type merge -set_attr merge_type mean -set_attr merge_nb 1 -v 1 -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_52/cluster_52_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_53/cluster_53_matrices_temp.tf -from tf -to tf  -attr name cluster_53 -attr accession cluster_53 -set_attr merged_AC 'ncor_0_8_none_miniatura_motifs:::PLAG1_HUMAN.H11MO.0.D' -set_attr merged_ID 'PLAG1_HUMAN.H11MO.0.D' -set_attr type merge -set_attr merge_type mean -set_attr merge_nb 1 -v 1 -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_53/cluster_53_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_52/cluster_52_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_53/cluster_53_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cp /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/ncor_0_8_none_miniatura_motifs_m3_CTCFL_HUMAN.H11MO.0.A_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_54/cluster_54_matrices_temp.tf


cp /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/ncor_0_8_none_miniatura_motifs_m39_RFX1_HUMAN.H11MO.0.B_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_55/cluster_55_matrices_temp.tf


cp /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/ncor_0_8_none_miniatura_motifs_m55_THAP1_HUMAN.H11MO.0.C_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_56/cluster_56_matrices_temp.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_54/cluster_54_matrices_temp.tf -from tf -to tf  -attr name cluster_54 -attr accession cluster_54 -set_attr merged_AC 'ncor_0_8_none_miniatura_motifs:::CTCFL_HUMAN.H11MO.0.A' -set_attr merged_ID 'CTCFL_HUMAN.H11MO.0.A' -set_attr type merge -set_attr merge_type mean -set_attr merge_nb 1 -v 1 -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_54/cluster_54_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_55/cluster_55_matrices_temp.tf -from tf -to tf  -attr name cluster_55 -attr accession cluster_55 -set_attr merged_AC 'ncor_0_8_none_miniatura_motifs:::RFX1_HUMAN.H11MO.0.B' -set_attr merged_ID 'RFX1_HUMAN.H11MO.0.B' -set_attr type merge -set_attr merge_type mean -set_attr merge_nb 1 -v 1 -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_55/cluster_55_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_56/cluster_56_matrices_temp.tf -from tf -to tf  -attr name cluster_56 -attr accession cluster_56 -set_attr merged_AC 'ncor_0_8_none_miniatura_motifs:::THAP1_HUMAN.H11MO.0.C' -set_attr merged_ID 'THAP1_HUMAN.H11MO.0.C' -set_attr type merge -set_attr merge_type mean -set_attr merge_nb 1 -v 1 -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_56/cluster_56_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_54/cluster_54_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_56/cluster_56_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_55/cluster_55_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cp /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/ncor_0_8_none_miniatura_motifs_m79_REST_m3_PFSK-1_encode_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_57/cluster_57_matrices_temp.tf


cp /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/ncor_0_8_none_miniatura_motifs_m13_HEY2_HUMAN.H11MO.0.D_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_58/cluster_58_matrices_temp.tf


cp /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/ncor_0_8_none_miniatura_motifs_m40_RREB1_HUMAN.H11MO.0.D_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_59/cluster_59_matrices_temp.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_58/cluster_58_matrices_temp.tf -from tf -to tf  -attr name cluster_58 -attr accession cluster_58 -set_attr merged_AC 'ncor_0_8_none_miniatura_motifs:::HEY2_HUMAN.H11MO.0.D' -set_attr merged_ID 'HEY2_HUMAN.H11MO.0.D' -set_attr type merge -set_attr merge_type mean -set_attr merge_nb 1 -v 1 -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_58/cluster_58_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_59/cluster_59_matrices_temp.tf -from tf -to tf  -attr name cluster_59 -attr accession cluster_59 -set_attr merged_AC 'ncor_0_8_none_miniatura_motifs:::RREB1_HUMAN.H11MO.0.D' -set_attr merged_ID 'RREB1_HUMAN.H11MO.0.D' -set_attr type merge -set_attr merge_type mean -set_attr merge_nb 1 -v 1 -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_59/cluster_59_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_57/cluster_57_matrices_temp.tf -from tf -to tf  -attr name cluster_57 -attr accession cluster_57 -set_attr merged_AC 'ncor_0_8_none_miniatura_motifs:::REST_m3_PFSK-1_encode' -set_attr merged_ID 'REST_m3_PFSK-1_encode' -set_attr type merge -set_attr merge_type mean -set_attr merge_nb 1 -v 1 -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_57/cluster_57_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_59/cluster_59_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_58/cluster_58_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_57/cluster_57_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cp /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/ncor_0_8_none_miniatura_motifs_m30_NR1H4_HUMAN.H11MO.0.B_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_60/cluster_60_matrices_temp.tf


cp /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/ncor_0_8_none_miniatura_motifs_m34_PAX5_HUMAN.H11MO.0.A_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_61/cluster_61_matrices_temp.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/ncor_0_8_none_miniatura_motifs_m21_KLF1_HUMAN.H11MO.0.A_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/ncor_0_8_none_miniatura_motifs_m24_KLF5_HUMAN.H11MO.0.A_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_1/cluster_6_node_1_cat.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_60/cluster_60_matrices_temp.tf -from tf -to tf  -attr name cluster_60 -attr accession cluster_60 -set_attr merged_AC 'ncor_0_8_none_miniatura_motifs:::NR1H4_HUMAN.H11MO.0.B' -set_attr merged_ID 'NR1H4_HUMAN.H11MO.0.B' -set_attr type merge -set_attr merge_type mean -set_attr merge_nb 1 -v 1 -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_60/cluster_60_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_61/cluster_61_matrices_temp.tf -from tf -to tf  -attr name cluster_61 -attr accession cluster_61 -set_attr merged_AC 'ncor_0_8_none_miniatura_motifs:::PAX5_HUMAN.H11MO.0.A' -set_attr merged_ID 'PAX5_HUMAN.H11MO.0.A' -set_attr type merge -set_attr merge_type mean -set_attr merge_nb 1 -v 1 -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_61/cluster_61_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_1/cluster_6_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_6 -name cluster_6 -calc mean -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_1/cluster_6_node_1_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_60/cluster_60_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_1/cluster_6_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.153221_oqxyCO


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_61/cluster_61_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_6/merged_consensuses/node_1/cluster_6_node_1_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cp /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/ncor_0_8_none_miniatura_motifs_m71_ZNF76_HUMAN.H11MO.0.C_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_62/cluster_62_matrices_temp.tf


cp /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/ncor_0_8_none_miniatura_motifs_m31_NRF1_HUMAN.H11MO.0.A_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_63/cluster_63_matrices_temp.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_62/cluster_62_matrices_temp.tf -from tf -to tf  -attr name cluster_62 -attr accession cluster_62 -set_attr merged_AC 'ncor_0_8_none_miniatura_motifs:::ZNF76_HUMAN.H11MO.0.C' -set_attr merged_ID 'ZNF76_HUMAN.H11MO.0.C' -set_attr type merge -set_attr merge_type mean -set_attr merge_nb 1 -v 1 -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_62/cluster_62_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_63/cluster_63_matrices_temp.tf -from tf -to tf  -attr name cluster_63 -attr accession cluster_63 -set_attr merged_AC 'ncor_0_8_none_miniatura_motifs:::NRF1_HUMAN.H11MO.0.A' -set_attr merged_ID 'NRF1_HUMAN.H11MO.0.A' -set_attr type merge -set_attr merge_type mean -set_attr merge_nb 1 -v 1 -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_63/cluster_63_matrices.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_62/cluster_62_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_63/cluster_63_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/ncor_0_8_none_miniatura_motifs_m10_EGR2_HUMAN.H11MO.1.A_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/ncor_0_8_none_miniatura_motifs_m8_EGR1_HUMAN.H11MO.0.A_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_8/merged_consensuses/node_1/cluster_8_node_1_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/ncor_0_8_none_miniatura_motifs_m6_E2F6_HUMAN.H11MO.0.A_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/ncor_0_8_none_miniatura_motifs_m7_E2F7_HUMAN.H11MO.0.B_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_7/merged_consensuses/node_1/cluster_7_node_1_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/ncor_0_8_none_miniatura_motifs_m22_KLF3_HUMAN.H11MO.0.B_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/ncor_0_8_none_miniatura_motifs_m47_SP3_HUMAN.H11MO.0.B_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_9/merged_consensuses/node_1/cluster_9_node_1_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/ncor_0_8_none_miniatura_motifs_m45_SP2_HUMAN.H11MO.0.A_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/ncor_0_8_none_miniatura_motifs_m48_SP4_HUMAN.H11MO.0.A_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_9/merged_consensuses/node_2/cluster_9_node_2_cat.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/ncor_0_8_none_miniatura_motifs_m22_KLF3_HUMAN.H11MO.0.B_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/ncor_0_8_none_miniatura_motifs_m47_SP3_HUMAN.H11MO.0.B_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/ncor_0_8_none_miniatura_motifs_m45_SP2_HUMAN.H11MO.0.A_aligned.tf /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/ncor_0_8_none_miniatura_motifs_m48_SP4_HUMAN.H11MO.0.A_aligned.tf >/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_9/merged_consensuses/node_3/cluster_9_node_3_cat.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_8/merged_consensuses/node_1/cluster_8_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_8 -name cluster_8 -calc mean -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_8/merged_consensuses/node_1/cluster_8_node_1_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_7/merged_consensuses/node_1/cluster_7_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_7 -name cluster_7 -calc mean -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_7/merged_consensuses/node_1/cluster_7_node_1_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_9/merged_consensuses/node_2/cluster_9_node_2_cat.tf -v 0 -in_format tf -out_format tf -id cluster_9 -name cluster_9 -calc mean -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_9/merged_consensuses/node_2/cluster_9_node_2_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_9/merged_consensuses/node_1/cluster_9_node_1_cat.tf -v 0 -in_format tf -out_format tf -id cluster_9 -name cluster_9 -calc mean -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_9/merged_consensuses/node_1/cluster_9_node_1_matrices.tf


/var/www/html/rsat/perl-scripts/merge-matrices -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_9/merged_consensuses/node_3/cluster_9_node_3_cat.tf -v 0 -in_format tf -out_format tf -id cluster_9 -name cluster_9 -calc mean -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_9/merged_consensuses/node_3/cluster_9_node_3_matrices.tf


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_8/merged_consensuses/node_1/cluster_8_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.153223_FiYm3U


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_7/merged_consensuses/node_1/cluster_7_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.153223_rAyXgW


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_9/merged_consensuses/node_3/cluster_9_nb_motifs_4.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.153223_r4KpYQ


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_9/merged_consensuses/node_2/cluster_9_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.153223_fBnGL2


/var/www/html/rsat/perl-scripts/convert-matrix -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_9/merged_consensuses/node_1/cluster_9_nb_motifs_2.tf -from tf -return info,header,margins -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/IC_test_2026-05-11.153223_VsirNY


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_8/merged_consensuses/node_1/cluster_8_node_1_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_7/merged_consensuses/node_1/cluster_7_node_1_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_9/merged_consensuses/node_1/cluster_9_node_1_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_9/merged_consensuses/node_3/cluster_9_node_3_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


cat /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_clusters_information/cluster_9/merged_consensuses/node_2/cluster_9_node_2_trimmed_matrices.tf >> /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/All_concatenated_motifs.tf


rm -r /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_pairwise_compa_logos


cp /var/www/html/rsat/public_html/templates_html/display_d3_tree.html /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_logo_tree.html


cp /var/www/html/rsat/public_html/templates_html/display_small_d3_tree.html /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_portable_logo_tree.html


mv /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_temporary.html /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_logo_tree.html


mv /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_temporary_2.html /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_portable_logo_tree.html


/var/www/html/rsat/perl-scripts/text-to-html -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_tables/pairwise_compa_matrix_descriptions.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_html/pairwise_compa_matrix_descriptions.html


/var/www/html/rsat/perl-scripts/text-to-html -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_tables/distance_table.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_tables/distance_table.html


/var/www/html/rsat/perl-scripts/text-to-html -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_tables/alignment_table.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_tables/alignment_table.html


/var/www/html/rsat/perl-scripts/text-to-html -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_tables/clusters.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_tables/clusters.html


/var/www/html/rsat/perl-scripts/text-to-html -i /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_tables/clusters_motif_names.tab -o /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_tables/clusters_motif_names.html


mv -f /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_temporary_2.html /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_portable_logo_tree.html
; matrix-clustering  -v 1 -max_matrices 300 -matrix ncor_0_8_none_miniatura_motifs $RSAT/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_query_matrices.mscan mscan -hclust_method average -calc mean -title ncor_0_8_none_miniatura_motifs -metric_build_tree Ncor -lth w 0 -lth cor 0 -lth Ncor 0.8 -quick -label_in_tree name -return json,heatmap -o $RSAT/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering
; Program version       	1.05
; Number of matrices          	87
; Output files
;	central_motifs_tf           	/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_central_motifs_transfac.tf
;	clusters_table_motif_names_html	/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_tables/clusters_motif_names.html
;	coverage_json_folder        	/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_coverage_json
;	summary_temp                	/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_SUMMARY_TEMP.html
;	pairwise_compa              	/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_tables/pairwise_compa.tab
;	temp_html                   	/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_temporary.html
;	dynamic_heatmap_html        	/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_dynamic_heatmap.html
;	clusters_table_html         	/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_tables/clusters.html
;	central_motifs              	/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_central_motifs_IDs.tab
;	dynamic_coverage_heatmap_html	/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_dynamic_coverage_heatmap.html
;	cluster_IDs_names           	/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_cluster_IDs.txt
;	matrix_descriptions         	/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_tables/pairwise_compa_matrix_descriptions.tab
;	consensus_cladogram_json    	/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_trees/tree.json
;	reference_compa             	/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_tables/Root_vs_reference_collection_compa.tab
;	central_motifs_IDs_temp     	/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_central_motifs_IDs_temporal.tab
;	heatmap_collections_d3      	/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_tables/collection_heatmap_tab.tsv
;	ref_collection_tf           	/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_reference_collection.tf
;	small_forest_export         	/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_small_forest.html
;	alignment_table_html        	/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_tables/alignment_table.html
;	all_concatenated_motifs     	/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_aligned_logos/All_concatenated_motifs.tf
;	err_log                     	/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_errors.txt
;	alignment_table             	/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_tables/alignment_table.tab
;	clusters_table_motif_names  	/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_tables/clusters_motif_names.tab
;	reference_compa_html        	/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_html/Root_vs_reference_collection_compa.html
;	distance_table              	/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_tables/distance_table.tab
;	html_index                  	/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_html/index.html
;	logo_cladogram_html         	/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_logo_tree.html
;	log                         	/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_log.txt
;	motif_file                  	/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_data/input_motifs_processed.tf
;	heatmap_coverage_attributes 	/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_tables/convergency_heatmap_attributes.tab
;	small_logo_cladogram_html   	/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_portable_logo_tree.html
;	radial_tree_template        	/var/www/html/rsat/public_html/templates_html/Radial_tree_template.html
;	input_matrices              	/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_data/input_motifs_processed.tf
;	radial_tree                 	/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_radial_tree.html
;	distance_table_html         	/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_tables/distance_table.html
;	cluster_summary_table       	/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_tables/clusters_summary_table.tab
;	heatmap_pdf                 	/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_figures/heatmap.pdf
;	percent_table               	/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_tables/clusters_summary_percent_table.tab
;	heatmap_coverage_d3         	/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_tables/convergency_heatmap_tab.tsv
;	hexa_colors                 	/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_hexa_colors.txt
;	matrix_descriptions_html    	/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_html/pairwise_compa_matrix_descriptions.html
;	Rlog                        	/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_Rlog.txt
;	root_motifs_table           	/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_root_motifs_table.tab
;	nb_clusters_table           	/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_tables/number_of_clusters.tab
;	coverage_table              	/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_tables/clusters_summary_coverage_contingency_table.tab
;	motif_richness_barplot_html 	/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_motif_richness_barplot.html
;	internal_nodes_attributes_table	/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_tables/internal_nodes_attributes.tab
;	heatmap_collections_attributes	/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_tables/collection_heatmap_order.tab
;	int_align                   	/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_tables/intermediate_alignments.tab
;	summary                     	/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_SUMMARY.html
;	root_motifs                 	/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_cluster_root_motifs.tf
;	clusters_table              	/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_tables/clusters.tab
;	motif_richness_tsv          	/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_motif_richness.tsv
;	pairwise_compa_html         	/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_html/pairwise_compa.html
;	prefix                      	/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering
;	archive                     	/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_archive.zip
;	temp_html_2                 	/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_temporary_2.html
;	temp_html_3                 	/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_temporary_3.html
;	heatmap_jpg                 	/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_figures/heatmap.jpg
; Directories
;	data                        	/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn/matrix-clustering_data
;	output                      	/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/matrix-clustering_2026-05-11.153132_OKM9Vn
; Host name	rsat
; Job started	2026-05-11.153132
; Job done	2026-05-11.153228
; Seconds	1.35
;	user	1.35
;	system	0.97
;	cuser	85.68
;	csystem	22.51