; pattern-assembly  -v 1 -subst 1 -toppat 50 -2str -max_asmb_nb 20 -i $RSAT/public_html/tmp/www-data/2026/05/11/oligo-analysis_2026-05-11.133124_FNYKlq.tab -o $RSAT/public_html/tmp/www-data/2026/05/11/oligo-analysis_2026-05-11.133124_FNYKlq.asmb
; Input file	/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/oligo-analysis_2026-05-11.133124_FNYKlq.tab
; Output file	/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/oligo-analysis_2026-05-11.133124_FNYKlq.asmb
; Input score column           	9
; Output score column          	0
; Strand-insensitive assembly
; Max flanking bases           	1
; Max substitutions            	1
; Min matches                  	0
; Min weight                   	0
; Max assembly size            	50
; Max assembly width           	0
; Top number of patterns       	50
; Number of input patterns     	34
;

; assembly # 1	seed: acaaga	8 assembled patterns	length 11
;    alignt	    rev_cpl	score
aacaag.....	.....cttgtt	1.62
.acaaga....	....tcttgt.	6.14
.acaagaa...	...ttcttgt.	0.54
..caagaa...	...ttcttg..	4.06
...aagaaaa.	.ttttctt...	2.64
...aagaaa..	..tttctt...	1.62
....agaaaa.	.ttttct....	3.49
....agaaaat	attttct....	0.04
aacaagaaaat	attttcttgtt	6.14	best consensus

; assembly # 2	seed: aataaga	8 assembled patterns	length 12
;     alignt	     rev_cpl	score
aaataa......	......ttattt	1.14
aaataaga....	....tcttattt	0.42
.aataaga....	....tcttatt.	2.31
...taagaa...	...ttctta...	1.11
....aagaaaa.	.ttttctt....	2.64
....aagaaa..	..tttctt....	1.62
.....agaaaa.	.ttttct.....	3.49
.....agaaaat	attttct.....	0.04
aaataagaaaat	attttcttattt	3.49	best consensus

; assembly # 3	seed: acaagat	3 assembled patterns	length 8
; alignt	 rev_cpl	score
aacaag..	..cttgtt	1.62
.acaaga.	.tcttgt.	6.14
.acaagat	atcttgt.	1.41
aacaagat	atcttgtt	6.14	best consensus

; assembly # 4	seed: caagag	4 assembled patterns	length 9
;  alignt	  rev_cpl	score
aacaag...	...cttgtt	1.62
.acaaga..	..tcttgt.	6.14
..caagag.	.ctcttg..	1.03
..caagaga	tctcttg..	0.95
aacaagaga	tctcttgtt	6.14	best consensus

; assembly # 5	seed: acgtaga	3 assembled patterns	length 9
;  alignt	  rev_cpl	score
tacgtaga.	.tctacgta	0.00
.acgtaga.	.tctacgt.	0.84
.acgtagaa	ttctacgt.	0.04
tacgtagaa	ttctacgta	0.84	best consensus

; assembly # 6	seed: caaacc	1 assembled patterns	length 6
;alignt	rev_cpl	score
caaacc	ggtttg	0.62
caaacc	ggtttg	0.62	best consensus

; assembly # 7	seed: ggatga	2 assembled patterns	length 7
;alignt	rev_cpl	score
aggatga	tcatcct	0.02
.ggatga	tcatcc.	0.62
aggatga	tcatcct	0.62	best consensus

; assembly # 8	seed: tcaaga	6 assembled patterns	length 10
;   alignt	   rev_cpl	score
tcaaga....	....tcttga	0.54
.caagaa...	...ttcttg.	4.06
..aagaaaa.	.ttttctt..	2.64
..aagaaa..	..tttctt..	1.62
...agaaaa.	.ttttct...	3.49
...agaaaat	attttct...	0.04
tcaagaaaat	attttcttga	4.06	best consensus

; assembly # 9	seed: atacaag	9 assembled patterns	length 13
;      alignt	      rev_cpl	score
aatacaag.....	.....cttgtatt	0.38
.atacaag.....	.....cttgtat.	0.49
...acaaga....	....tcttgt...	6.14
...acaagaa...	...ttcttgt...	0.54
....caagaa...	...ttcttg....	4.06
.....aagaaaa.	.ttttctt.....	2.64
.....aagaaa..	..tttctt.....	1.62
......agaaaa.	.ttttct......	3.49
......agaaaat	attttct......	0.04
aatacaagaaaat	attttcttgtatt	6.14	best consensus

; assembly # 10	seed: aaataaag	3 assembled patterns	length 9
;  alignt	  rev_cpl	score
aaataa...	...ttattt	1.14
aaataaag.	.ctttattt	0.41
.aataaagg	cctttatt.	0.06
aaataaagg	cctttattt	1.14	best consensus

; assembly # 11	seed: cagatg	1 assembled patterns	length 6
;alignt	rev_cpl	score
cagatg	catctg	0.23
cagatg	catctg	0.23	best consensus

; assembly # 12	seed: agctgat	1 assembled patterns	length 7
;alignt	rev_cpl	score
agctgat	atcagct	0.20
agctgat	atcagct	0.20	best consensus

; assembly # 13	seed: agaaga	1 assembled patterns	length 6
;alignt	rev_cpl	score
agaaga	tcttct	0.19
agaaga	tcttct	0.19	best consensus

; assembly # 14	seed: gacaaga	8 assembled patterns	length 11
;    alignt	    rev_cpl	score
gacaaga....	....tcttgtc	0.16
.acaaga....	....tcttgt.	6.14
.acaagaa...	...ttcttgt.	0.54
..caagaa...	...ttcttg..	4.06
...aagaaaa.	.ttttctt...	2.64
...aagaaa..	..tttctt...	1.62
....agaaaa.	.ttttct....	3.49
....agaaaat	attttct....	0.04
gacaagaaaat	attttcttgtc	6.14	best consensus

; assembly # 15	seed: agttaaga	6 assembled patterns	length 12
;     alignt	     rev_cpl	score
agttaaga....	....tcttaact	0.11
...taagaa...	...ttctta...	1.11
....aagaaaa.	.ttttctt....	2.64
....aagaaa..	..tttctt....	1.62
.....agaaaa.	.ttttct.....	3.49
.....agaaaat	attttct.....	0.04
agttaagaaaat	attttcttaact	3.49	best consensus

; assembly # 16	seed: aacagacc	1 assembled patterns	length 8
; alignt	 rev_cpl	score
aacagacc	ggtctgtt	0.10
aacagacc	ggtctgtt	0.10	best consensus

; assembly # 17	seed: caataaga	7 assembled patterns	length 12
;     alignt	     rev_cpl	score
caataaga....	....tcttattg	0.08
.aataaga....	....tcttatt.	2.31
...taagaa...	...ttctta...	1.11
....aagaaaa.	.ttttctt....	2.64
....aagaaa..	..tttctt....	1.62
.....agaaaa.	.ttttct.....	3.49
.....agaaaat	attttct.....	0.04
caataagaaaat	attttcttattg	3.49	best consensus

; assembly # 18	seed: aaggaa	1 assembled patterns	length 6
;alignt	rev_cpl	score
aaggaa	ttcctt	0.02
aaggaa	ttcctt	0.02	best consensus
; Host name	rsat
; Job started	2026-05-11.133127
; Job done	2026-05-11.133130
; Seconds	3.14
;	user	3.14
;	system	0.01
;	cuser	0
;	csystem	0