; oligo-analysis  -v 1 -sort -i $RSAT/public_html/tmp/www-data/2026/05/11/tmp_sequence_2026-05-11.133520_7uzHBl.fasta.purged -format fasta -lth occ_sig 0 -uth rank 50 -return freq,mseq,occ,proba,rank,ratio,zscore -1str -noov -quick_if_possible -seqtype dna -markov 2 -pseudo 0.01 -l 6 -o $RSAT/public_html/tmp/www-data/2026/05/11/oligo-analysis_2026-05-11.133520_fcETIc_6nt.tab
; Citation: van Helden et al. (1998). J Mol Biol 281(5), 827-42. 
; Program version              	1.169
; Slow counting mode           
; Detection of over-represented words (right-tail test)
; Oligomer length              	6
; Input file                   	$RSAT/public_html/tmp/www-data/2026/05/11/tmp_sequence_2026-05-11.133520_7uzHBl.fasta.purged
; Input format                 	fasta
; Output file                  	$RSAT/public_html/tmp/www-data/2026/05/11/oligo-analysis_2026-05-11.133520_fcETIc_6nt.tab
; Discard overlapping matches
; Counted on a single strand
; Background model             	Markov
; Background estimation method 	Markov model estimated from input sequences
; Markov chain order           	2
; Pseudo-frequency             	0.01
; Pseudo-frequency per oligo   	2.44140625e-06
; Sequence type                	DNA
; Nb of sequences              	500
; Sum of sequence lengths      	189173
; discarded residues           	723	 (other letters than ACGT)
; discarded occurrences        	735	 (contain discarded residues)
; nb possible positions        	185938
; total oligo occurrences      	185938
; total overlapping occurrences	1134
; total non overlapping occ    	184804
; alphabet size                	4
; nb possible oligomers        	4096
; oligomers tested for significance	4096
;
; column headers
;	1	seq            	oligomer sequence
;	2	id             	oligomer identifier
;	3	obs_freq       	observed relative frequency
;	4	exp_freq       	expected relative frequency
;	5	occ            	observed occurrences
;	6	exp_occ        	expected occurrences
;	7	occ_P          	occurrence probability (binomial)
;	8	occ_E          	E-value for occurrences (binomial)
;	9	occ_sig        	occurrence significance (binomial)
;	10	rank           	rank
;	11	ovl_occ        	number of overlapping occurrences (discarded from the count)
;	12	forbocc        	forbidden positions (to avoid self-overlap)
;	13	zscore         	z-score (Gaussian approximation)
;	14	exp_var        	estimation of the variance on occurrences
;	15	ratio          	observed/expected ratio
;	16	ms             	number of matching sequences
;	17	exp_ms         	expected number of matching sequences
;	18	ms_P           	matching sequence probability (binomial)
;	19	ms_E           	E-value for matching sequences (binomial)
;	20	ms_sig         	matching sequenc significance (binomial)
;	21	ms_freq        	proportion of matching sequences (sequences with at least one occurrence)
;	22	exp_msf        	expected proportion matching sequences
;	23	ms_rati        	observed/expected numbers of matching sequences
#seq	id	obs_freq	exp_freq	occ	exp_occ	occ_P	occ_E	occ_sig	rank	ovl_occ	forbocc	zscore	exp_var	ratio	ms	exp_ms	ms_P	ms_E	ms_sig	ms_freq	exp_msf	ms_rati
cgatga	cgatga	0.0003549570287	0.0001415111563	66	26.31	6e-11	2.5e-07	6.61	1	0	325	7.74	26.312	2.5083	60	25.63	1.4e-09	5.9e-06	5.2	0.12000	0.05127	2.34067
gatgaa	gatgaa	0.0006399982790	0.0003502720395	119	65.13	1.4e-09	5.6e-06	5.25	2	0	583	6.68	65.129	1.8271	97	61.08	3e-06	0.012	1.9	0.19400	0.12215	1.58820
gctgct	gctgct	0.0003657133023	0.0001708347444	68	31.76	1.6e-08	6.6e-05	4.18	3	4	336	6.43	31.765	2.1407	60	30.78	8e-07	0.0033	2.5	0.12000	0.06156	1.94936
tgatga	tgatga	0.0004840323118	0.0002595641857	90	48.26	5.2e-08	2.1e-04	3.67	4	4	437	6.01	48.263	1.8648	76	46.01	1.2e-05	0.047	1.3	0.15200	0.09202	1.65173
gaagaa	gaagaa	0.0010433585389	0.0007015274184	194	130.44	1.2e-07	5.0e-04	3.30	5	17	960	5.57	130.441	1.4873	152	114.85	7.8e-05	0.32	0.5	0.30400	0.22970	1.32348
ttcttt	ttcttt	0.0013606686100	0.0009699158031	253	180.34	1.9e-07	7.8e-04	3.11	6	8	1256	5.41	180.344	1.4029	181	151.46	0.00267	11	-1.0	0.36200	0.30293	1.19501
ctgccg	ctgccg	0.0002097473351	0.0000821408974	39	15.27	2.7e-07	1.1e-03	2.95	7	0	195	6.07	15.273	2.5535	38	15.04	2.9e-07	0.0012	2.9	0.07600	0.03009	2.52612
tgctgc	tgctgc	0.0003495788919	0.0001741265342	65	32.38	3e-07	1.2e-03	2.91	8	1	325	5.73	32.377	2.0076	56	31.35	2.4e-05	0.097	1.0	0.11200	0.06271	1.78609
atcaag	atcaag	0.0006668889630	0.0004109071379	124	76.40	3.5e-07	1.4e-03	2.84	9	0	618	5.45	76.403	1.6230	111	70.87	8.9e-07	0.0037	2.4	0.22200	0.14173	1.56635
tctttt	tctttt	0.0013445341996	0.0009652953078	250	179.49	3.8e-07	1.5e-03	2.81	10	5	1249	5.26	179.485	1.3929	171	150.86	0.02888	1.2e+02	-2.1	0.34200	0.30173	1.13348
agtaac	agtaac	0.0003926039863	0.0002100399224	73	39.05	7.9e-07	3.2e-03	2.49	11	0	363	5.43	39.054	1.8692	65	37.57	1.3e-05	0.055	1.3	0.13000	0.07514	1.73002
aacaat	aacaat	0.0008927707085	0.0005992584977	166	111.42	8.3e-07	3.4e-03	2.47	12	0	824	5.17	111.425	1.4898	131	99.91	0.00045	1.9	-0.3	0.26200	0.19982	1.31119
tttctt	tttctt	0.0013337779260	0.0009699158031	248	180.34	1e-06	4.3e-03	2.37	13	9	1230	5.04	180.344	1.3751	175	151.46	0.01326	54	-1.7	0.35000	0.30293	1.15540
tatata	tatata	0.0010057115813	0.0007022347441	187	130.57	2e-06	8.2e-03	2.09	14	39	924	4.94	130.572	1.4322	152	114.95	8.2e-05	0.34	0.5	0.30400	0.22990	1.32231
ctgcta	ctgcta	0.0003657133023	0.0002025090777	68	37.65	5.5e-06	2.3e-02	1.65	15	0	335	4.95	37.654	1.8059	60	36.27	0.00010	0.42	0.4	0.12000	0.07255	1.65404
ctgctg	ctgctg	0.0003173100711	0.0001690791231	59	31.44	7.4e-06	3.0e-02	1.52	16	2	295	4.92	31.438	1.8767	56	30.47	1.1e-05	0.044	1.4	0.11200	0.06095	1.83771
ttactg	ttactg	0.0004571416279	0.0002751416154	85	51.16	9.4e-06	3.8e-02	1.42	17	0	423	4.73	51.159	1.6615	73	48.64	0.00034	1.4	-0.1	0.14600	0.09727	1.50096
caacaa	caacaa	0.0007798298358	0.0005342042668	145	99.33	1e-05	4.2e-02	1.37	18	8	708	4.58	99.329	1.4598	122	90.11	0.00021	0.88	0.1	0.24400	0.18021	1.35395
cgctag	cgctag	0.0001882347879	0.0000825018130	35	15.34	1.2e-05	4.7e-02	1.33	19	0	170	5.02	15.340	2.2816	31	15.11	0.00017	0.7	0.2	0.06200	0.03022	2.05191
cagtac	cagtac	0.0003280663447	0.0001815811235	61	33.76	1.6e-05	6.5e-02	1.19	20	0	305	4.69	33.763	1.8067	59	32.65	1e-05	0.041	1.4	0.11800	0.06530	1.80699
aaggaa	aaggaa	0.0008497456141	0.0006018660234	158	111.91	2.3e-05	9.5e-02	1.02	21	0	785	4.36	111.910	1.4119	127	100.30	0.00217	8.9	-0.9	0.25400	0.20059	1.26624
taataa	taataa	0.0006937796470	0.0004724185027	129	87.84	2.3e-05	9.5e-02	1.02	22	5	641	4.39	87.841	1.4686	114	80.57	6.4e-05	0.26	0.6	0.22800	0.16115	1.41484
aagaag	aagaag	0.0009841990341	0.0007159739398	183	133.13	2.4e-05	9.9e-02	1.01	23	8	914	4.32	133.127	1.3746	145	116.91	0.00217	8.9	-0.9	0.29000	0.23383	1.24023
cccttc	cccttc	0.0002904193871	0.0001570770747	54	29.21	2.6e-05	1.0e-01	0.98	24	0	270	4.59	29.207	1.8489	48	28.37	0.00032	1.3	-0.1	0.09600	0.05674	1.69180
tgaagg	tgaagg	0.0004625197647	0.0002882945679	86	53.60	2.8e-05	1.2e-01	0.94	25	0	429	4.42	53.605	1.6043	79	50.84	6.1e-05	0.25	0.6	0.15800	0.10168	1.55394
cttctt	cttctt	0.0007583172886	0.0005281503111	141	98.20	2.9e-05	1.2e-01	0.93	26	6	705	4.32	98.203	1.4358	111	89.18	0.00750	31	-1.5	0.22200	0.17836	1.24464
gtgatg	gtgatg	0.0002850412503	0.0001539336789	53	28.62	2.9e-05	1.2e-01	0.93	27	0	259	4.56	28.622	1.8517	48	27.82	0.00021	0.84	0.1	0.09600	0.05564	1.72535
ctacta	ctacta	0.0003657133023	0.0002144850855	68	39.88	3.2e-05	1.3e-01	0.89	28	0	335	4.45	39.881	1.7051	61	38.34	0.00025	1	-0.0	0.12200	0.07667	1.59120
cattga	cattga	0.0005001667222	0.0003196211221	93	59.43	3.4e-05	1.4e-01	0.86	29	0	461	4.35	59.430	1.5649	86	56.04	4.2e-05	0.17	0.8	0.17200	0.11208	1.53456
agaaga	agaaga	0.0009142832557	0.0006613284025	170	122.97	3.4e-05	1.4e-01	0.85	30	12	843	4.24	122.966	1.3825	134	109.04	0.00475	19	-1.3	0.26800	0.21809	1.22886
gatgat	gatgat	0.0003979821231	0.0002409694663	74	44.81	4e-05	1.6e-01	0.78	31	3	367	4.36	44.805	1.6516	65	42.86	0.00056	2.3	-0.4	0.13000	0.08572	1.51651
acagta	acagta	0.0004302509439	0.0002664039220	80	49.53	4.2e-05	1.7e-01	0.76	32	0	400	4.33	49.535	1.6150	69	47.17	0.00098	4	-0.6	0.13800	0.09433	1.46292
aataac	aataac	0.0006077294582	0.0004087060330	113	75.99	4.3e-05	1.8e-01	0.75	33	0	565	4.25	75.994	1.4870	90	70.51	0.00884	36	-1.6	0.18000	0.14103	1.27634
agagga	agagga	0.0004302509439	0.0002667673770	80	49.60	4.4e-05	1.8e-01	0.75	34	0	388	4.32	49.602	1.6128	72	47.23	0.00024	0.97	0.0	0.14400	0.09445	1.52455
ataaca	ataaca	0.0006561326894	0.0004526980003	122	84.17	6.4e-05	2.6e-01	0.58	35	2	608	4.12	84.174	1.4494	102	77.49	0.00205	8.4	-0.9	0.20400	0.15497	1.31637
tttagt	tttagt	0.0005378136798	0.0003559971519	100	66.19	6.5e-05	2.7e-01	0.58	36	0	495	4.16	66.193	1.5107	87	62.01	0.00074	3	-0.5	0.17400	0.12402	1.40302
gaagga	gaagga	0.0005055448590	0.0003306775518	94	61.49	7e-05	2.9e-01	0.54	37	0	467	4.15	61.486	1.5288	84	57.86	0.00033	1.3	-0.1	0.16800	0.11573	1.45167
aaaggg	aaaggg	0.0004678979015	0.0003015439910	87	56.07	7.8e-05	3.2e-01	0.50	38	0	428	4.13	56.068	1.5517	80	53.05	0.00014	0.59	0.2	0.16000	0.10609	1.50811
tagtaa	tagtaa	0.0004141165335	0.0002592346363	77	48.20	8e-05	3.3e-01	0.48	39	0	384	4.15	48.202	1.5975	73	45.96	6.2e-05	0.25	0.6	0.14600	0.09191	1.58845
tagtgt	tagtgt	0.0003065537975	0.0001767715333	57	32.87	8.4e-05	3.5e-01	0.46	40	0	281	4.21	32.869	1.7342	57	31.81	1.8e-05	0.075	1.1	0.11400	0.06363	1.79165
catcaa	catcaa	0.0005647043638	0.0003822127858	105	71.07	9.9e-05	4.0e-01	0.39	41	0	520	4.03	71.068	1.4775	87	66.26	0.00490	20	-1.3	0.17400	0.13252	1.31301
acagca	acagca	0.0004248728071	0.0002706799709	79	50.33	0.00011	4.6e-01	0.34	42	0	393	4.04	50.330	1.5696	71	47.89	0.00057	2.3	-0.4	0.14200	0.09577	1.48270
aagagg	aagagg	0.0004840323118	0.0003181322503	90	59.15	0.00011	4.7e-01	0.33	43	0	440	4.01	59.153	1.5215	82	55.80	0.00027	1.1	-0.0	0.16400	0.11159	1.46963
taatag	taatag	0.0004356290807	0.0002794958057	81	51.97	0.00012	4.7e-01	0.32	44	0	401	4.03	51.969	1.5586	74	49.37	0.00032	1.3	-0.1	0.14800	0.09873	1.49901
acgatg	acgatg	0.0002689068399	0.0001520031095	50	28.26	0.00014	5.7e-01	0.25	45	0	247	4.09	28.263	1.7691	48	27.48	0.00016	0.64	0.2	0.09600	0.05496	1.74665
gaggag	gaggag	0.0002473942927	0.0001363682446	46	25.36	0.00014	5.9e-01	0.23	46	3	230	4.10	25.356	1.8142	41	24.73	0.00126	5.2	-0.7	0.08200	0.04945	1.65821
caacga	caacga	0.0003603351655	0.0002233084920	67	41.52	0.00017	6.9e-01	0.16	47	0	326	3.95	41.522	1.6136	61	39.85	0.00067	2.7	-0.4	0.12200	0.07970	1.53080
atggtg	atggtg	0.0003549570287	0.0002197338724	66	40.86	0.00018	7.4e-01	0.13	48	0	330	3.93	40.857	1.6154	60	39.24	0.00076	3.1	-0.5	0.12000	0.07847	1.52920
ttaacg	ttaacg	0.0003173100711	0.0001911174994	59	35.54	0.00020	8.0e-01	0.10	49	0	295	3.94	35.536	1.6603	55	34.31	0.00043	1.8	-0.2	0.11000	0.06861	1.60323
gtcatt	gtcatt	0.0003872258495	0.0002465405726	72	45.84	0.00021	8.7e-01	0.06	50	0	359	3.86	45.841	1.5706	69	43.81	0.00013	0.53	0.3	0.13800	0.08762	1.57506
; Host name	rsat
; Job started	2026-05-11.133521
; Job done	2026-05-11.133521
; Seconds	0.92
;	user	0.92
;	system	0.04
;	cuser	0
;	csystem	0