; convert-matrix -v 1 -i $RSAT/public_html/tmp/www-data/2026/05/11/oligo-analysis_2026-05-11.134158_qgrcwl_pssm_count_matrices.tf -from tf -to tab -return counts -return logo -logo_format png -logo_file $RSAT/public_html/tmp/www-data/2026/05/11/oligo-analysis_2026-05-11.134158_qgrcwl_pssm_count_matrices_logo -o $RSAT/public_html/tmp/www-data/2026/05/11/oligo-analysis_2026-05-11.134158_qgrcwl_pssm_count_matrices_links.txt
; Input files
; input /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/oligo-analysis_2026-05-11.134158_qgrcwl_pssm_count_matrices.tf
; Input format tf
; Output files
; output /var/www/html/rsat/public_html/tmp/www-data/2026/05/11/oligo-analysis_2026-05-11.134158_qgrcwl_pssm_count_matrices_links.txt
; Output format tab
; pseudo-weight 1
a 94 131 26 292 15 311 6 313 12 323 85 135 100
c 64 60 215 8 11 8 7 5 7 2 62 50 68
g 41 68 20 15 2 6 4 3 3 6 42 81 51
t 138 78 76 22 309 12 320 16 315 6 148 71 118
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/05/11//oligo-analysis_2026-05-11.134158_qgrcwl_pssm_count_matrices_logo_m1.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/05/11//oligo-analysis_2026-05-11.134158_qgrcwl_pssm_count_matrices_logo_m1_rc.png
;
a 198 206 78 44 33 24 34 51 26 35 46 44 128 152
c 143 179 488 55 41 38 51 493 50 46 40 48 185 168
g 125 91 56 15 28 18 25 42 26 19 25 31 128 118
t 377 367 221 729 741 763 733 257 741 743 732 720 402 405
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/05/11//oligo-analysis_2026-05-11.134158_qgrcwl_pssm_count_matrices_logo_m2.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/05/11//oligo-analysis_2026-05-11.134158_qgrcwl_pssm_count_matrices_logo_m2_rc.png
;
a 28 19 84 0 0 84 84 0 27 36
c 21 19 0 0 84 0 0 0 17 12
g 13 17 0 0 0 0 0 84 19 17
t 22 29 0 84 0 0 0 0 21 19
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/05/11//oligo-analysis_2026-05-11.134158_qgrcwl_pssm_count_matrices_logo_m3.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/05/11//oligo-analysis_2026-05-11.134158_qgrcwl_pssm_count_matrices_logo_m3_rc.png
;
a 120 80 40 26 25 23 40 19 18 24 29 29 16 18 62 47 39 95 103
c 89 101 37 29 40 44 225 35 27 28 30 256 41 31 92 37 38 93 99
g 49 55 20 18 19 18 40 13 12 12 17 31 19 20 146 29 28 64 66
t 217 239 378 402 391 390 170 408 418 411 399 159 399 406 175 362 370 223 207
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/05/11//oligo-analysis_2026-05-11.134158_qgrcwl_pssm_count_matrices_logo_m4.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/05/11//oligo-analysis_2026-05-11.134158_qgrcwl_pssm_count_matrices_logo_m4_rc.png
;
a 97 98 15 230 222 220 213 27 19 218 109 106
c 34 30 11 2 7 1 5 6 3 12 41 38
g 48 47 204 3 5 10 7 21 207 7 36 39
t 61 65 10 5 6 9 15 186 11 3 54 57
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/05/11//oligo-analysis_2026-05-11.134158_qgrcwl_pssm_count_matrices_logo_m5.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/05/11//oligo-analysis_2026-05-11.134158_qgrcwl_pssm_count_matrices_logo_m5_rc.png
;
a 91 80 5 15 20 7 4 5 38 25 79 79
c 71 68 10 284 293 7 8 8 25 230 73 71
g 42 50 6 6 6 6 4 4 26 24 56 52
t 142 148 325 41 27 326 330 329 257 67 138 144
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/05/11//oligo-analysis_2026-05-11.134158_qgrcwl_pssm_count_matrices_logo_m6.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/05/11//oligo-analysis_2026-05-11.134158_qgrcwl_pssm_count_matrices_logo_m6_rc.png
;
a 59 60 155 155 0 0 155 155 75 62
c 33 23 0 0 0 0 0 0 14 24
g 21 36 0 0 155 155 0 0 39 36
t 42 36 0 0 0 0 0 0 27 33
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/05/11//oligo-analysis_2026-05-11.134158_qgrcwl_pssm_count_matrices_logo_m7.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/05/11//oligo-analysis_2026-05-11.134158_qgrcwl_pssm_count_matrices_logo_m7_rc.png
;
a 184 159 23 19 19 16 15 14 22 46 144 175
c 158 156 28 27 41 38 36 24 30 520 164 147
g 91 93 8 7 26 13 11 12 17 41 111 106
t 415 440 789 795 762 781 786 798 779 241 429 420
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/05/11//oligo-analysis_2026-05-11.134158_qgrcwl_pssm_count_matrices_logo_m8.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/05/11//oligo-analysis_2026-05-11.134158_qgrcwl_pssm_count_matrices_logo_m8_rc.png
;
a 85 124 31 266 16 273 10 293 12 295 57 187 153 122 94
c 60 59 194 8 17 10 5 4 8 5 37 35 45 41 54
g 38 57 20 13 5 11 6 2 6 7 20 46 31 66 49
t 130 73 68 26 275 19 292 14 287 6 199 45 84 84 116
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/05/11//oligo-analysis_2026-05-11.134158_qgrcwl_pssm_count_matrices_logo_m9.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/05/11//oligo-analysis_2026-05-11.134158_qgrcwl_pssm_count_matrices_logo_m9_rc.png
;
a 156 152 346 346 0 346 346 346 158 137
c 45 64 0 0 0 0 0 0 45 42
g 76 70 0 0 346 0 0 0 72 88
t 69 60 0 0 0 0 0 0 71 79
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/05/11//oligo-analysis_2026-05-11.134158_qgrcwl_pssm_count_matrices_logo_m10.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/05/11//oligo-analysis_2026-05-11.134158_qgrcwl_pssm_count_matrices_logo_m10_rc.png
;
a 78 86 9 11 19 8 6 12 7 12 64 76
c 66 56 7 6 41 9 5 6 8 287 57 58
g 55 51 3 6 210 5 3 4 12 14 67 42
t 145 151 325 321 74 322 330 322 317 31 156 168
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/05/11//oligo-analysis_2026-05-11.134158_qgrcwl_pssm_count_matrices_logo_m11.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/05/11//oligo-analysis_2026-05-11.134158_qgrcwl_pssm_count_matrices_logo_m11_rc.png
;
a 8 2 2 0 0 0 1 2 3 2 6 10
c 5 8 0 25 1 0 23 22 1 0 5 3
g 2 5 22 0 1 23 1 0 21 21 5 7
t 10 10 1 0 23 2 0 1 0 2 9 5
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/05/11//oligo-analysis_2026-05-11.134158_qgrcwl_pssm_count_matrices_logo_m12.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/05/11//oligo-analysis_2026-05-11.134158_qgrcwl_pssm_count_matrices_logo_m12_rc.png
;
a 202 239 52 25 679 32 42 691 37 250 254
c 168 162 35 22 51 18 25 50 19 162 143
g 133 156 23 26 51 25 15 39 29 111 150
t 375 321 768 805 97 803 796 98 793 355 331
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/05/11//oligo-analysis_2026-05-11.134158_qgrcwl_pssm_count_matrices_logo_m13.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/05/11//oligo-analysis_2026-05-11.134158_qgrcwl_pssm_count_matrices_logo_m13_rc.png
;
a 194 185 53 41 46 20 15 14 20 187 185
c 173 169 621 37 648 33 30 28 28 193 177
g 136 132 34 8 29 14 16 19 20 135 114
t 352 369 147 769 132 788 794 794 787 340 379
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/05/11//oligo-analysis_2026-05-11.134158_qgrcwl_pssm_count_matrices_logo_m14.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/05/11//oligo-analysis_2026-05-11.134158_qgrcwl_pssm_count_matrices_logo_m14_rc.png
;
a 39 38 96 96 96 0 0 0 35 27
c 17 16 0 0 0 0 0 0 24 18
g 24 24 0 0 0 96 96 96 14 25
t 16 18 0 0 0 0 0 0 23 26
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/05/11//oligo-analysis_2026-05-11.134158_qgrcwl_pssm_count_matrices_logo_m15.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/05/11//oligo-analysis_2026-05-11.134158_qgrcwl_pssm_count_matrices_logo_m15_rc.png
;
; Host name rsat
; Job started 2026-05-11.134206
; Job done 2026-05-11.134211
; Seconds 0.33
; user 0.33
; system 0.12
; cuser 4.18
; csystem 0.86