; pattern-assembly  -v 1 -subst 1 -toppat 50 -1str -max_asmb_nb 20 -i $RSAT/public_html/tmp/www-data/2026/05/11/oligo-analysis_2026-05-11.134402_yXJdC2.tab -o $RSAT/public_html/tmp/www-data/2026/05/11/oligo-analysis_2026-05-11.134402_yXJdC2.asmb
; Input file	/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/oligo-analysis_2026-05-11.134402_yXJdC2.tab
; Output file	/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/oligo-analysis_2026-05-11.134402_yXJdC2.asmb
; Input score column           	9
; Output score column          	0
; Strand-sensitive assembly
; Max flanking bases           	1
; Max substitutions            	1
; Min matches                  	0
; Min weight                   	0
; Max assembly size            	50
; Max assembly width           	0
; Top number of patterns       	50
; Number of input patterns     	7
;

; assembly # 1	seed: acgtaga	3 assembled patterns	length 9
;  alignt	score
tacgtaga.	0.07
.acgtaga.	1.72
.acgtagaa	0.11
tacgtagaa	1.72	best consensus

; assembly # 2	seed: aagtgacc	1 assembled patterns	length 8
; alignt	score
aagtgacc	0.65
aagtgacc	0.65	best consensus

; assembly # 3	seed: acgcttcc	1 assembled patterns	length 8
; alignt	score
acgcttcc	0.26
acgcttcc	0.26	best consensus

; assembly # 4	seed: tcttgt	1 assembled patterns	length 6
;alignt	score
tcttgt	0.10
tcttgt	0.10	best consensus

; assembly # 5	seed: gtgtacgg	1 assembled patterns	length 8
; alignt	score
gtgtacgg	0.10
gtgtacgg	0.10	best consensus
; Host name	rsat
; Job started	2026-05-11.134403
; Job done	2026-05-11.134403
; Seconds	0.14
;	user	0.14
;	system	0.02
;	cuser	0
;	csystem	0