; pattern-assembly  -v 1 -subst 1 -toppat 50 -1str -max_asmb_nb 20 -i $RSAT/public_html/tmp/www-data/2026/05/11/oligo-analysis_2026-05-11.134443_LK0vIR.tab -o $RSAT/public_html/tmp/www-data/2026/05/11/oligo-analysis_2026-05-11.134443_LK0vIR.asmb
; Input file	/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/oligo-analysis_2026-05-11.134443_LK0vIR.tab
; Output file	/var/www/html/rsat/public_html/tmp/www-data/2026/05/11/oligo-analysis_2026-05-11.134443_LK0vIR.asmb
; Input score column           	9
; Output score column          	0
; Strand-sensitive assembly
; Max flanking bases           	1
; Max substitutions            	1
; Min matches                  	0
; Min weight                   	0
; Max assembly size            	50
; Max assembly width           	0
; Top number of patterns       	50
; Number of input patterns     	11
;

; assembly # 1	seed: acgtaga	6 assembled patterns	length 10
;   alignt	score
tacgtaga..	0.69
.acgtaga..	1.59
.acgtagaa.	0.87
..cgtagaaa	0.86
..cgtagaa.	0.33
..cgtaga..	0.22
tacgtagaaa	1.59	best consensus

; assembly # 2	seed: tcttgt	1 assembled patterns	length 6
;alignt	score
tcttgt	0.87
tcttgt	0.87	best consensus

; assembly # 3	seed: gcctacg	1 assembled patterns	length 7
;alignt	score
gcctacg	0.78
gcctacg	0.78	best consensus

; assembly # 4	seed: gacagtt	1 assembled patterns	length 7
;alignt	score
gacagtt	0.19
gacagtt	0.19	best consensus

; assembly # 5	seed: tcttgtcc	2 assembled patterns	length 8
; alignt	score
tcttgt..	0.87
tcttgtcc	0.18
tcttgtcc	0.87	best consensus

; assembly # 6	seed: gttgctc	1 assembled patterns	length 7
;alignt	score
gttgctc	0.06
gttgctc	0.06	best consensus
; Host name	rsat
; Job started	2026-05-11.134444
; Job done	2026-05-11.134444
; Seconds	0.18
;	user	0.18
;	system	0.01
;	cuser	0
;	csystem	0