; dna-pattern  -v 1 -pl $RSAT/public_html/tmp/www-data/2026/05/16/dna-pattern_2026-05-16.094612_IZengo.pat -i $RSAT/public_html/tmp/www-data/2026/05/16/tmp_sequence_2026-05-16.094612_hTudzZ.fasta -format fasta -return sites -origin -0 -N 4 -return scores -return table -noov -2str -subst 0
; Citation: van Helden et al. (2000). Yeast 16(2), 177-187.
; Input file           	$RSAT/public_html/tmp/www-data/2026/05/16/tmp_sequence_2026-05-16.094612_hTudzZ.fasta
; Input format         	fasta
; Pattern file         	$RSAT/public_html/tmp/www-data/2026/05/16/dna-pattern_2026-05-16.094612_IZengo.pat
; Search method        	regexp
; Threshold            	0
; Allowed substitutions	0
; Return fields
;                     	table
;                     	scores
;                     	sites
; Patterns
; 	seq	id	score
; 	TATTTAT	TATTTAT	1
; 	TTATTTATT	TTATTTATT	1
; 
; Matching positions
; PatID	Strand	Pattern	SeqID	Start	End	matching_seq	Score
TATTTAT	D	TATTTAT	TCYC1	-153	-147	tcccTATTTATtttt	1.00
TATTTAT	D	TATTTAT	TCYC1	-113	-107	acgtTATTTATattt	1.00
#seq	score	TATTTAT	TTATTTATT
TAox1	0	0	0
TGAPDH	0	0	0
TCYC1	2	2	0
TDAS1	0	0	0
TMAL33	0	0	0
; Host name	rsat
; Job started	2026-05-16.094612
; Job done	2026-05-16.094612
; Seconds	0.08
;	user	0.08
;	system	0
;	cuser	0
;	csystem	0