; pattern-assembly  -v 1 -subst 1 -toppat 50 -2str -max_asmb_nb 20 -i $RSAT/public_html/tmp/www-data/2026/05/16/oligo-analysis_2026-05-16.124457_ceJlAB.tab -o $RSAT/public_html/tmp/www-data/2026/05/16/oligo-analysis_2026-05-16.124457_ceJlAB.asmb
; Input file	/var/www/html/rsat/public_html/tmp/www-data/2026/05/16/oligo-analysis_2026-05-16.124457_ceJlAB.tab
; Output file	/var/www/html/rsat/public_html/tmp/www-data/2026/05/16/oligo-analysis_2026-05-16.124457_ceJlAB.asmb
; Input score column           	8
; Output score column          	0
; Strand-insensitive assembly
; Max flanking bases           	1
; Max substitutions            	1
; Min matches                  	0
; Min weight                   	0
; Max assembly size            	50
; Max assembly width           	0
; Top number of patterns       	50
; Number of input patterns     	26
;

; assembly # 1	seed: tatataa	9 assembled patterns	length 10
;   alignt	   rev_cpl	score
tttatata..	..tatataaa	0.83
tttata....	....tataaa	0.55
.ttatata..	..tatataa.	4.88
.ttatat...	...atataa.	1.38
..tatataa.	.ttatata..	4.88
..tatata..	..tatata..	2.17
..tatataaa	tttatata..	0.83
...atataa.	.ttatat...	1.38
....tataaa	tttata....	0.55
tttatataaa	tttatataaa	4.88	best consensus

; assembly # 2	seed: aacgtg	7 assembled patterns	length 9
;  alignt	  rev_cpl	score
acaacgtg.	.cacgttgt	1.18
.caacgtg.	.cacgttg.	3.11
.caacgt..	..acgttg.	2.14
.caacgtga	tcacgttg.	0.74
..aacgtg.	.cacgtt..	4.27
..aacgtga	tcacgtt..	1.24
...acgtga	tcacgt...	2.42
acaacgtga	tcacgttgt	4.27	best consensus

; assembly # 3	seed: acgtgc	8 assembled patterns	length 10
;   alignt	   rev_cpl	score
acaacgtg..	..cacgttgt	1.18
.caacgtg..	..cacgttg.	3.11
.caacgt...	...acgttg.	2.14
..aacgtg..	..cacgtt..	4.27
..aacgtgc.	.gcacgtt..	0.10
...acgtgc.	.gcacgt...	2.40
...acgtgcg	cgcacgt...	1.01
....cgtgcg	cgcacg....	0.33
acaacgtgcg	cgcacgttgt	4.27	best consensus

; assembly # 4	seed: caacta	1 assembled patterns	length 6
;alignt	rev_cpl	score
caacta	tagttg	1.12
caacta	tagttg	1.12	best consensus

; assembly # 5	seed: cacgta	2 assembled patterns	length 7
;alignt	rev_cpl	score
tcacgt.	.acgtga	2.42
.cacgta	tacgtg.	0.87
tcacgta	tacgtga	2.42	best consensus

; assembly # 6	seed: aataat	1 assembled patterns	length 6
;alignt	rev_cpl	score
aataat	attatt	0.77
aataat	attatt	0.77	best consensus

; assembly # 7	seed: aaagac	1 assembled patterns	length 6
;alignt	rev_cpl	score
aaagac	gtcttt	0.47
aaagac	gtcttt	0.47	best consensus

; assembly # 8	seed: ctatata	7 assembled patterns	length 9
;  alignt	  rev_cpl	score
ctatata..	..tatatag	0.44
ctatat...	...atatag	0.05
.tatataa.	.ttatata.	4.88
.tatata..	..tatata.	2.17
.tatataaa	tttatata.	0.83
..atataa.	.ttatat..	1.38
...tataaa	tttata...	0.55
ctatataaa	tttatatag	4.88	best consensus

; assembly # 9	seed: agcgaa	1 assembled patterns	length 6
;alignt	rev_cpl	score
agcgaa	ttcgct	0.31
agcgaa	ttcgct	0.31	best consensus

; assembly # 10	seed: cgttga	7 assembled patterns	length 9
;  alignt	  rev_cpl	score
tcacgt...	...acgtga	2.42
tcacgtt..	..aacgtga	1.24
tcacgttg.	.caacgtga	0.74
.cacgtt..	..aacgtg.	4.27
.cacgttg.	.caacgtg.	3.11
..acgttg.	.caacgt..	2.14
...cgttga	tcaacg...	0.14
tcacgttga	tcaacgtga	4.27	best consensus

; assembly # 11	seed: acatgg	1 assembled patterns	length 6
;alignt	rev_cpl	score
acatgg	ccatgt	0.10
acatgg	ccatgt	0.10	best consensus

; assembly # 12	seed: acacaca	1 assembled patterns	length 7
;alignt	rev_cpl	score
acacaca	tgtgtgt	0.04
acacaca	tgtgtgt	0.04	best consensus
; Host name	rsat
; Job started	2026-05-16.124503
; Job done	2026-05-16.124505
; Seconds	1.42
;	user	1.42
;	system	0.01
;	cuser	0
;	csystem	0