; pattern-assembly  -v 1 -subst 1 -toppat 50 -2str -max_asmb_nb 20 -i $RSAT/public_html/tmp/www-data/2026/05/16/oligo-analysis_2026-05-16.124906_fgMS9b.tab -o $RSAT/public_html/tmp/www-data/2026/05/16/oligo-analysis_2026-05-16.124906_fgMS9b.asmb
; Input file	/var/www/html/rsat/public_html/tmp/www-data/2026/05/16/oligo-analysis_2026-05-16.124906_fgMS9b.tab
; Output file	/var/www/html/rsat/public_html/tmp/www-data/2026/05/16/oligo-analysis_2026-05-16.124906_fgMS9b.asmb
; Input score column           	8
; Output score column          	0
; Strand-insensitive assembly
; Max flanking bases           	1
; Max substitutions            	1
; Min matches                  	0
; Min weight                   	0
; Max assembly size            	50
; Max assembly width           	0
; Top number of patterns       	50
; Number of input patterns     	8
;

; assembly # 1	seed: gtcaac	2 assembled patterns	length 7
;alignt	rev_cpl	score
gtcaac.	.gttgac	3.16
gtcaact	agttgac	0.02
gtcaact	agttgac	3.16	best consensus

; assembly # 2	seed: aagtcaa	4 assembled patterns	length 9
;  alignt	  rev_cpl	score
aagtcaa..	..ttgactt	2.02
aagtca...	...tgactt	0.50
..gtcaac.	.gttgac..	3.16
..gtcaact	agttgac..	0.02
aagtcaact	agttgactt	3.16	best consensus

; assembly # 3	seed: acgtcaa	4 assembled patterns	length 10
;   alignt	   rev_cpl	score
cacgtc....	....gacgtg	0.31
.acgtcaa..	..ttgacgt.	0.80
...gtcaac.	.gttgac...	3.16
...gtcaact	agttgac...	0.02
cacgtcaact	agttgacgtg	3.16	best consensus

; assembly # 4	seed: actcgtg	1 assembled patterns	length 7
;alignt	rev_cpl	score
actcgtg	cacgagt	0.33
actcgtg	cacgagt	0.33	best consensus

; assembly # 5	seed: gcaggcta	1 assembled patterns	length 8
; alignt	 rev_cpl	score
gcaggcta	tagcctgc	0.01
gcaggcta	tagcctgc	0.01	best consensus
; Host name	rsat
; Job started	2026-05-16.124912
; Job done	2026-05-16.124912
; Seconds	0.23
;	user	0.23
;	system	0.02
;	cuser	0
;	csystem	0