### Collection Complementarity

Here is displayed the information corresponding to the complementarity between the input collection of motifs.

Note: remind that these values are dependent of the threshold used to separate the clusters.

1. The heatmap represents a Contingency table showing the intersection between the input motif sets.
   - Each cell represent the percentage of coverage between two motif sets after clustering.
   - Note that is not a symmetrical matrix.
   - The values in diagonal represent the coverage of one collection versus itself (always = 1.000) .

2. The table show the number of exclusive motifs (those found exclusively in one collection and not in the others) after the clustering.

Order_heatmap_cells:

Venn diagram

oct4_homer covers 100% of oct4_homer

Collections | oct4_homer size | oct4_homer (intersection) | oct4_homer size | Intersection
--- | --- | --- | --- | ---
| oct4_homer | 19 | 19 | 19 | cluster_1 cluster_2 cluster_3 cluster_4 cluster_5 cluster_6 cluster_7 cluster_8 cluster_9 cluster_10 cluster_11 cluster_12

Venn diagram

oct4_homer covers 96% of oct4_meme.chip

Collections | oct4_homer size | oct4_meme.chip (intersection) | oct4_meme.chip size | Intersection
--- | --- | --- | --- | ---
| oct4_homer oct4_meme.chip | 19 | 24 | 25 | cluster_1 cluster_2 cluster_3 cluster_4 cluster_6

Venn diagram

oct4_homer covers 100% of oct4_peak_motifs

Collections | oct4_homer size | oct4_peak_motifs (intersection) | oct4_peak_motifs size | Intersection
--- | --- | --- | --- | ---
| oct4_homer oct4_peak_motifs | 19 | 22 | 22 | cluster_1 cluster_2 cluster_4

Venn diagram

oct4_meme.chip covers 52.63% of oct4_homer

Collections | oct4_meme.chip size | oct4_homer (intersection) | oct4_homer size | Intersection
--- | --- | --- | --- | ---
| oct4_meme.chip oct4_homer | 25 | 10 | 19 | cluster_1 cluster_2 cluster_3 cluster_4 cluster_6

Venn diagram

oct4_meme.chip covers 100% of oct4_meme.chip

Collections | oct4_meme.chip size | oct4_meme.chip (intersection) | oct4_meme.chip size | Intersection
--- | --- | --- | --- | ---
| oct4_meme.chip | 25 | 25 | 25 | cluster_1 cluster_2 cluster_3 cluster_4 cluster_6 cluster_13

Venn diagram

oct4_meme.chip covers 100% of oct4_peak_motifs

Collections | oct4_meme.chip size | oct4_peak_motifs (intersection) | oct4_peak_motifs size | Intersection
--- | --- | --- | --- | ---
| oct4_meme.chip oct4_peak_motifs | 25 | 22 | 22 | cluster_1 cluster_2 cluster_4

Venn diagram

oct4_peak_motifs covers 31.58% of oct4_homer

Collections | oct4_peak_motifs size | oct4_homer (intersection) | oct4_homer size | Intersection
--- | --- | --- | --- | ---
| oct4_peak_motifs oct4_homer | 22 | 6 | 19 | cluster_1 cluster_2 cluster_4

Venn diagram

oct4_peak_motifs covers 84% of oct4_meme.chip

Collections | oct4_peak_motifs size | oct4_meme.chip (intersection) | oct4_meme.chip size | Intersection
--- | --- | --- | --- | ---
| oct4_peak_motifs oct4_meme.chip | 22 | 21 | 25 | cluster_1 cluster_2 cluster_4

Venn diagram

oct4_peak_motifs covers 100% of oct4_peak_motifs

Collections | oct4_peak_motifs size | oct4_peak_motifs (intersection) | oct4_peak_motifs size | Intersection
--- | --- | --- | --- | ---
| oct4_peak_motifs | 22 | 22 | 22 | cluster_1 cluster_2 cluster_4

Show Venn Diagrams

- Click on each button to visualize the intersection between each pair of motif databases.
- The blue circle represents the reference collection.
- The orange circle represents the compared collection.

oct4_homer vs oct4_homer
oct4_homer vs oct4_meme.chip
oct4_homer vs oct4_peak_motifs
oct4_meme.chip vs oct4_homer
oct4_meme.chip vs oct4_meme.chip
oct4_meme.chip vs oct4_peak_motifs
oct4_peak_motifs vs oct4_homer
oct4_peak_motifs vs oct4_meme.chip
oct4_peak_motifs vs oct4_peak_motifs

#### Exclusive Motifs by Collection

Collection | Nb Total Motifs | Nb Exclusive Motifs | Collection percent | Total percent
--- | --- | --- | --- | ---
oct4_homer | 19 | 5 | 0.2632 | 0.0758
oct4_meme.chip | 25 | 1 | 0.04 | 0.0152
oct4_peak_motifs | 22 | 0 | 0 | 0

- This table shows the number of exclusive motifs corresponding to a particular collection.
- Collection percent column indicates the percentage of this motif collection covered by its exclusive motifs.
- Total percent column indicates the percentage of ALL the input motifs collection covered by the exclusive motifs of this collection.