position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2026/05/18/peak-motifs.2026-05-18.120740_2026-05-18.120740_qxsUFj/data/sequences/peak-motifs_test_maxlen2000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 1 -ci 20 -img_format png -title zf420_gene_peaks -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2026/05/18/peak-motifs.2026-05-18.120740_2026-05-18.120740_qxsUFj/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab Citation: van Helden, et al. (2000). Nucleic Acids Res 28, 1000-1010. Sequence file $RSAT/public_html/tmp/www-data/2026/05/18/peak-motifs.2026-05-18.120740_2026-05-18.120740_qxsUFj/data/sequences/peak-motifs_test_maxlen2000_purged_ml40_mis3.fasta Sequence format fasta Sequence type dna Output file $RSAT/public_html/tmp/www-data/2026/05/18/peak-motifs.2026-05-18.120740_2026-05-18.120740_qxsUFj/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab Oligo length 1 Occurrences counted on a single strands Conditions of applicability checked. Background model estimation: homogeneous repartition Sequence statistics: Nb of sequences 696 Sum of sequence lengths 1134136 Min sequence length 0 Max sequence length 2000 Average sequence length 1629 Possible positions 1134136 Oligonucleotide statistics: Total occurrences 954949 Position interval parameters: Position interval 20 Number of windows 100 Total positions 1134136 Degrees of freedom 99 K-mer clustering parameters: Number of clusters 0 Clustering method complete Position intervals: window [min,max] mid seq occ 1 -50 [-999,-980] -989.5 378 7515 2 -49 [-979,-960] -969.5 386 7630 3 -48 [-959,-940] -949.5 397 7817 4 -47 [-939,-920] -929.5 402 8007 5 -46 [-919,-900] -909.5 407 8076 6 -45 [-899,-880] -889.5 414 8187 7 -44 [-879,-860] -869.5 423 8381 8 -43 [-859,-840] -849.5 428 8484 9 -42 [-839,-820] -829.5 439 8722 10 -41 [-819,-800] -809.5 446 8843 11 -40 [-799,-780] -789.5 452 8992 12 -39 [-779,-760] -769.5 455 9087 13 -38 [-759,-740] -749.5 467 9229 14 -37 [-739,-720] -729.5 479 9430 15 -36 [-719,-700] -709.5 489 9681 16 -35 [-699,-680] -689.5 492 9818 17 -34 [-679,-660] -669.5 502 9927 18 -33 [-659,-640] -649.5 512 10120 19 -32 [-639,-620] -629.5 524 10344 20 -31 [-619,-600] -609.5 534 10570 21 -30 [-599,-580] -589.5 541 10760 22 -29 [-579,-560] -569.5 553 10956 23 -28 [-559,-540] -549.5 562 11153 24 -27 [-539,-520] -529.5 573 11360 25 -26 [-519,-500] -509.5 584 11574 26 -25 [-499,-480] -489.5 588 11728 27 -24 [-479,-460] -469.5 599 11912 28 -23 [-459,-440] -449.5 607 12082 29 -22 [-439,-420] -429.5 615 12239 30 -21 [-419,-400] -409.5 620 12352 31 -20 [-399,-380] -389.5 628 12467 32 -19 [-379,-360] -369.5 637 12660 33 -18 [-359,-340] -349.5 651 12924 34 -17 [-339,-320] -329.5 657 13082 35 -16 [-319,-300] -309.5 668 13264 36 -15 [-299,-280] -289.5 676 13480 37 -14 [-279,-260] -269.5 689 13616 38 -13 [-259,-240] -249.5 694 13852 39 -12 [-239,-220] -229.5 694 13880 40 -11 [-219,-200] -209.5 695 13892 41 -10 [-199,-180] -189.5 695 13900 42 -9 [-179,-160] -169.5 695 13900 43 -8 [-159,-140] -149.5 695 13900 44 -7 [-139,-120] -129.5 696 13919 45 -6 [-119,-100] -109.5 696 13920 46 -5 [-99,-80] -89.5 696 13920 47 -4 [-79,-60] -69.5 696 13920 48 -3 [-59,-40] -49.5 696 13920 49 -2 [-39,-20] -29.5 696 13920 50 -1 [-19,0] -9.5 696 13920 51 0 [1,20] 10.5 696 13920 52 1 [21,40] 30.5 696 13920 53 2 [41,60] 50.5 696 13920 54 3 [61,80] 70.5 696 13920 55 4 [81,100] 90.5 696 13920 56 5 [101,120] 110.5 696 13920 57 6 [121,140] 130.5 696 13918 58 7 [141,160] 150.5 695 13900 59 8 [161,180] 170.5 695 13900 60 9 [181,200] 190.5 695 13900 61 10 [201,220] 210.5 695 13890 62 11 [221,240] 230.5 694 13880 63 12 [241,260] 250.5 694 13849 64 13 [261,280] 270.5 689 13607 65 14 [281,300] 290.5 675 13470 66 15 [301,320] 310.5 668 13257 67 16 [321,340] 330.5 657 13081 68 17 [341,360] 350.5 651 12910 69 18 [361,380] 370.5 637 12653 70 19 [381,400] 390.5 628 12459 71 20 [401,420] 410.5 620 12345 72 21 [421,440] 430.5 615 12230 73 22 [441,460] 450.5 607 12075 74 23 [461,480] 470.5 598 11901 75 24 [481,500] 490.5 588 11722 76 25 [501,520] 510.5 583 11563 77 26 [521,540] 530.5 573 11348 78 27 [541,560] 550.5 560 11139 79 28 [561,580] 570.5 553 10949 80 29 [581,600] 590.5 541 10754 81 30 [601,620] 610.5 534 10558 82 31 [621,640] 630.5 523 10334 83 32 [641,660] 650.5 510 10109 84 33 [661,680] 670.5 501 9917 85 34 [681,700] 690.5 492 9815 86 35 [701,720] 710.5 489 9671 87 36 [721,740] 730.5 475 9414 88 37 [741,760] 750.5 466 9219 89 38 [761,780] 770.5 455 9084 90 39 [781,800] 790.5 452 8988 91 40 [801,820] 810.5 444 8836 92 41 [821,840] 830.5 439 8709 93 42 [841,860] 850.5 426 8479 94 43 [861,880] 870.5 423 8371 95 44 [881,900] 890.5 412 8177 96 45 [901,920] 910.5 405 8067 97 46 [921,940] 930.5 401 8002 98 47 [941,960] 950.5 395 7804 99 48 [961,980] 970.5 386 7623 100 49 [981,1000] 990.5 378 7507 Column headers 1 seq pattern sequence 2 id pattern identifier 3 occ pattern occurrences 4 chi2 observed chi-square 5 df degrees of freedom 6 Pval P-value (probability for one word to be a false positive) 7 Eval E-value; expected number of false positives (Eval = Pval * nb_tests) 8 sig Significance (sig = -log10(Eval)) 9 rank rank of the pattern according to sorting criterion 10 -989.5 occurrences in window 1 [-999,-980] 11 -969.5 occurrences in window 2 [-979,-960] 12 -949.5 occurrences in window 3 [-959,-940] 13 -929.5 occurrences in window 4 [-939,-920] 14 -909.5 occurrences in window 5 [-919,-900] 15 -889.5 occurrences in window 6 [-899,-880] 16 -869.5 occurrences in window 7 [-879,-860] 17 -849.5 occurrences in window 8 [-859,-840] 18 -829.5 occurrences in window 9 [-839,-820] 19 -809.5 occurrences in window 10 [-819,-800] 20 -789.5 occurrences in window 11 [-799,-780] 21 -769.5 occurrences in window 12 [-779,-760] 22 -749.5 occurrences in window 13 [-759,-740] 23 -729.5 occurrences in window 14 [-739,-720] 24 -709.5 occurrences in window 15 [-719,-700] 25 -689.5 occurrences in window 16 [-699,-680] 26 -669.5 occurrences in window 17 [-679,-660] 27 -649.5 occurrences in window 18 [-659,-640] 28 -629.5 occurrences in window 19 [-639,-620] 29 -609.5 occurrences in window 20 [-619,-600] 30 -589.5 occurrences in window 21 [-599,-580] 31 -569.5 occurrences in window 22 [-579,-560] 32 -549.5 occurrences in window 23 [-559,-540] 33 -529.5 occurrences in window 24 [-539,-520] 34 -509.5 occurrences in window 25 [-519,-500] 35 -489.5 occurrences in window 26 [-499,-480] 36 -469.5 occurrences in window 27 [-479,-460] 37 -449.5 occurrences in window 28 [-459,-440] 38 -429.5 occurrences in window 29 [-439,-420] 39 -409.5 occurrences in window 30 [-419,-400] 40 -389.5 occurrences in window 31 [-399,-380] 41 -369.5 occurrences in window 32 [-379,-360] 42 -349.5 occurrences in window 33 [-359,-340] 43 -329.5 occurrences in window 34 [-339,-320] 44 -309.5 occurrences in window 35 [-319,-300] 45 -289.5 occurrences in window 36 [-299,-280] 46 -269.5 occurrences in window 37 [-279,-260] 47 -249.5 occurrences in window 38 [-259,-240] 48 -229.5 occurrences in window 39 [-239,-220] 49 -209.5 occurrences in window 40 [-219,-200] 50 -189.5 occurrences in window 41 [-199,-180] 51 -169.5 occurrences in window 42 [-179,-160] 52 -149.5 occurrences in window 43 [-159,-140] 53 -129.5 occurrences in window 44 [-139,-120] 54 -109.5 occurrences in window 45 [-119,-100] 55 -89.5 occurrences in window 46 [-99,-80] 56 -69.5 occurrences in window 47 [-79,-60] 57 -49.5 occurrences in window 48 [-59,-40] 58 -29.5 occurrences in window 49 [-39,-20] 59 -9.5 occurrences in window 50 [-19,0] 60 10.5 occurrences in window 51 [1,20] 61 30.5 occurrences in window 52 [21,40] 62 50.5 occurrences in window 53 [41,60] 63 70.5 occurrences in window 54 [61,80] 64 90.5 occurrences in window 55 [81,100] 65 110.5 occurrences in window 56 [101,120] 66 130.5 occurrences in window 57 [121,140] 67 150.5 occurrences in window 58 [141,160] 68 170.5 occurrences in window 59 [161,180] 69 190.5 occurrences in window 60 [181,200] 70 210.5 occurrences in window 61 [201,220] 71 230.5 occurrences in window 62 [221,240] 72 250.5 occurrences in window 63 [241,260] 73 270.5 occurrences in window 64 [261,280] 74 290.5 occurrences in window 65 [281,300] 75 310.5 occurrences in window 66 [301,320] 76 330.5 occurrences in window 67 [321,340] 77 350.5 occurrences in window 68 [341,360] 78 370.5 occurrences in window 69 [361,380] 79 390.5 occurrences in window 70 [381,400] 80 410.5 occurrences in window 71 [401,420] 81 430.5 occurrences in window 72 [421,440] 82 450.5 occurrences in window 73 [441,460] 83 470.5 occurrences in window 74 [461,480] 84 490.5 occurrences in window 75 [481,500] 85 510.5 occurrences in window 76 [501,520] 86 530.5 occurrences in window 77 [521,540] 87 550.5 occurrences in window 78 [541,560] 88 570.5 occurrences in window 79 [561,580] 89 590.5 occurrences in window 80 [581,600] 90 610.5 occurrences in window 81 [601,620] 91 630.5 occurrences in window 82 [621,640] 92 650.5 occurrences in window 83 [641,660] 93 670.5 occurrences in window 84 [661,680] 94 690.5 occurrences in window 85 [681,700] 95 710.5 occurrences in window 86 [701,720] 96 730.5 occurrences in window 87 [721,740] 97 750.5 occurrences in window 88 [741,760] 98 770.5 occurrences in window 89 [761,780] 99 790.5 occurrences in window 90 [781,800] 100 810.5 occurrences in window 91 [801,820] 101 830.5 occurrences in window 92 [821,840] 102 850.5 occurrences in window 93 [841,860] 103 870.5 occurrences in window 94 [861,880] 104 890.5 occurrences in window 95 [881,900] 105 910.5 occurrences in window 96 [901,920] 106 930.5 occurrences in window 97 [921,940] 107 950.5 occurrences in window 98 [941,960] 108 970.5 occurrences in window 99 [961,980] 109 990.5 occurrences in window 100 [981,1000]
| seq | id | occ | chi2 | df | Pval | Eval | sig | rank | -989.5 | -969.5 | -949.5 | -929.5 | -909.5 | -889.5 | -869.5 | -849.5 | -829.5 | -809.5 | -789.5 | -769.5 | -749.5 | -729.5 | -709.5 | -689.5 | -669.5 | -649.5 | -629.5 | -609.5 | -589.5 | -569.5 | -549.5 | -529.5 | -509.5 | -489.5 | -469.5 | -449.5 | -429.5 | -409.5 | -389.5 | -369.5 | -349.5 | -329.5 | -309.5 | -289.5 | -269.5 | -249.5 | -229.5 | -209.5 | -189.5 | -169.5 | -149.5 | -129.5 | -109.5 | -89.5 | -69.5 | -49.5 | -29.5 | -9.5 | 10.5 | 30.5 | 50.5 | 70.5 | 90.5 | 110.5 | 130.5 | 150.5 | 170.5 | 190.5 | 210.5 | 230.5 | 250.5 | 270.5 | 290.5 | 310.5 | 330.5 | 350.5 | 370.5 | 390.5 | 410.5 | 430.5 | 450.5 | 470.5 | 490.5 | 510.5 | 530.5 | 550.5 | 570.5 | 590.5 | 610.5 | 630.5 | 650.5 | 670.5 | 690.5 | 710.5 | 730.5 | 750.5 | 770.5 | 790.5 | 810.5 | 830.5 | 850.5 | 870.5 | 890.5 | 910.5 | 930.5 | 950.5 | 970.5 | 990.5 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| t | t | 367621 | 332.5 | 99 | 5.1e-27 | 2e-26 | 25.69 | 1 | 2443 | 2404 | 2513 | 2529 | 2554 | 2668 | 2687 | 2712 | 2858 | 2829 | 2770 | 2849 | 3015 | 3074 | 3107 | 3168 | 3234 | 3253 | 3363 | 3427 | 3438 | 3549 | 3517 | 3712 | 3730 | 3845 | 3877 | 3830 | 4076 | 4065 | 4157 | 4153 | 4208 | 4338 | 4453 | 4577 | 4597 | 4647 | 4695 | 4610 | 4640 | 4617 | 4726 | 4766 | 4678 | 4656 | 4645 | 4610 | 4688 | 4570 | 4675 | 4573 | 4568 | 4662 | 4666 | 4605 | 4615 | 4602 | 4576 | 4536 | 4478 | 4566 | 4542 | 4400 | 4371 | 4357 | 4326 | 4152 | 4078 | 4129 | 3978 | 3993 | 3947 | 3825 | 3683 | 3616 | 3516 | 3454 | 3396 | 3397 | 3242 | 3196 | 3246 | 3004 | 3022 | 2985 | 2912 | 2869 | 2855 | 2760 | 2665 | 2686 | 2589 | 2612 | 2549 | 2461 | 2422 | 2409 | 2401 | 2327 |
| a | a | 366303 | 202.8 | 99 | 3.9e-09 | 1.6e-08 | 7.80 | 2 | 2241 | 2356 | 2407 | 2468 | 2590 | 2467 | 2663 | 2695 | 2734 | 2810 | 2912 | 2942 | 2839 | 2990 | 3059 | 3066 | 3092 | 3189 | 3289 | 3263 | 3470 | 3514 | 3620 | 3637 | 3715 | 3744 | 3834 | 3986 | 3905 | 3882 | 3940 | 4094 | 4252 | 4314 | 4327 | 4326 | 4385 | 4539 | 4463 | 4507 | 4561 | 4589 | 4530 | 4625 | 4573 | 4515 | 4552 | 4641 | 4571 | 4561 | 4567 | 4594 | 4587 | 4539 | 4548 | 4646 | 4568 | 4662 | 4631 | 4550 | 4685 | 4536 | 4580 | 4532 | 4474 | 4433 | 4306 | 4311 | 4197 | 3972 | 3979 | 3933 | 3913 | 3839 | 3794 | 3806 | 3615 | 3622 | 3525 | 3375 | 3457 | 3247 | 3093 | 3197 | 3172 | 3065 | 3016 | 2917 | 2906 | 2893 | 2881 | 2767 | 2713 | 2675 | 2502 | 2554 | 2541 | 2419 | 2357 | 2368 |
| c | c | 110349 | 120.1 | 99 | 7.3e-02 | 0.29 | 0.53 | 3 | 737 | 724 | 735 | 781 | 749 | 786 | 739 | 787 | 830 | 811 | 854 | 803 | 842 | 842 | 904 | 919 | 936 | 975 | 940 | 984 | 1025 | 1026 | 1115 | 1064 | 1086 | 1141 | 1199 | 1163 | 1179 | 1231 | 1216 | 1237 | 1244 | 1296 | 1288 | 1339 | 1355 | 1353 | 1356 | 1375 | 1341 | 1350 | 1311 | 1294 | 1347 | 1433 | 1377 | 1313 | 1364 | 1428 | 1374 | 1390 | 1394 | 1391 | 1345 | 1355 | 1436 | 1353 | 1367 | 1429 | 1276 | 1355 | 1317 | 1379 | 1367 | 1296 | 1286 | 1267 | 1201 | 1239 | 1293 | 1213 | 1151 | 1182 | 1175 | 1113 | 1154 | 1107 | 1079 | 1047 | 983 | 1033 | 1007 | 966 | 967 | 989 | 905 | 933 | 879 | 891 | 855 | 868 | 829 | 815 | 802 | 742 | 807 | 799 | 721 | 703 |
| g | g | 110676 | 102.5 | 99 | 3.9e-01 | 1.5 | -0.19 | 4 | 731 | 755 | 749 | 789 | 741 | 806 | 824 | 808 | 790 | 869 | 904 | 927 | 923 | 924 | 951 | 965 | 977 | 1004 | 1010 | 1107 | 1029 | 1062 | 1061 | 1116 | 1188 | 1122 | 1150 | 1261 | 1205 | 1286 | 1273 | 1288 | 1340 | 1254 | 1328 | 1339 | 1339 | 1331 | 1340 | 1377 | 1367 | 1384 | 1413 | 1329 | 1398 | 1362 | 1371 | 1391 | 1327 | 1377 | 1293 | 1327 | 1367 | 1369 | 1425 | 1387 | 1377 | 1352 | 1362 | 1372 | 1391 | 1348 | 1338 | 1306 | 1324 | 1286 | 1290 | 1269 | 1237 | 1180 | 1163 | 1181 | 1149 | 1140 | 1170 | 1095 | 1151 | 1050 | 1045 | 1053 | 1004 | 1004 | 949 | 966 | 898 | 883 | 900 | 871 | 844 | 871 | 857 | 819 | 827 | 760 | 808 | 803 | 712 | 702 | 710 | 729 |
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