/var/www/html/rsat/public_html/tmp/www-data/2026/05/18/peak-motifs.2026-05-18.120740_2026-05-18.120740_qxsUFj/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab 
 compare-matrices  -v 1 -format transfac -file $RSAT/public_html/tmp/www-data/2026/05/18/peak-motifs.2026-05-18.120740_2026-05-18.120740_qxsUFj/results/discovered_motifs/peak-motifs_motifs_discovered.tf -distinct -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/05/18/peak-motifs.2026-05-18.120740_2026-05-18.120740_qxsUFj/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab
 Program version       	1.118
 Quick mode 
 Input files
	file1 	$RSAT/public_html/tmp/www-data/2026/05/18/peak-motifs.2026-05-18.120740_2026-05-18.120740_qxsUFj/results/discovered_motifs/peak-motifs_motifs_discovered.tf
	file2 	$RSAT/public_html/tmp/www-data/2026/05/18/peak-motifs.2026-05-18.120740_2026-05-18.120740_qxsUFj/results/discovered_motifs/peak-motifs_motifs_discovered.tf
 Output files
	match_table_txt	$RSAT/public_html/tmp/www-data/2026/05/18/peak-motifs.2026-05-18.120740_2026-05-18.120740_qxsUFj/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab
	prefix       	$RSAT/public_html/tmp/www-data/2026/05/18/peak-motifs.2026-05-18.120740_2026-05-18.120740_qxsUFj/results/discovered_motifs/peak-motifs_motifs_disco_compa
	html_index   	$RSAT/public_html/tmp/www-data/2026/05/18/peak-motifs.2026-05-18.120740_2026-05-18.120740_qxsUFj/results/discovered_motifs/peak-motifs_motifs_disco_compa_index.html
	match_table_html	$RSAT/public_html/tmp/www-data/2026/05/18/peak-motifs.2026-05-18.120740_2026-05-18.120740_qxsUFj/results/discovered_motifs/peak-motifs_motifs_disco_compa.html
	alignments_1ton_html	$RSAT/public_html/tmp/www-data/2026/05/18/peak-motifs.2026-05-18.120740_2026-05-18.120740_qxsUFj/results/discovered_motifs/peak-motifs_motifs_disco_compa_alignments_1ton.html
	alignments_1ton	$RSAT/public_html/tmp/www-data/2026/05/18/peak-motifs.2026-05-18.120740_2026-05-18.120740_qxsUFj/results/discovered_motifs/peak-motifs_motifs_disco_compa_alignments_1ton.tab
 Matrices
	file1	10 matrices	$RSAT/public_html/tmp/www-data/2026/05/18/peak-motifs.2026-05-18.120740_2026-05-18.120740_qxsUFj/results/discovered_motifs/peak-motifs_motifs_discovered.tf
		file1	1	18	1610
		file1	2	19	1287
		file1	3	19	1084
		file1	4	14	1221
		file1	5	11	2805
		file1	6	20	1396
		file1	7	23	717
		file1	8	13	1959
		file1	9	14	1066
		file1	10	16	1213
	file2	10 matrices	$RSAT/public_html/tmp/www-data/2026/05/18/peak-motifs.2026-05-18.120740_2026-05-18.120740_qxsUFj/results/discovered_motifs/peak-motifs_motifs_discovered.tf
		file2		1		18		1610
		file2		2		19		1287
		file2		3		19		1084
		file2		4		14		1221
		file2		5		11		2805
		file2		6		20		1396
		file2		7		23		717
		file2		8		13		1959
		file2		9		14		1066
		file2		10		16		1213
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_6nt_test_vs_ctrl_m2 oligos_6nt_test_vs_ctrl_m2 oligos_6nt_test_vs_ctrl_m2 oligos_6nt_test_vs_ctrl_m2 1.000 1.000 19 19 19 19 1.0000 1.0000 1.0000 D 0
oligos_6nt_test_vs_ctrl_m5 oligos_6nt_test_vs_ctrl_m5 oligos_6nt_test_vs_ctrl_m5 oligos_6nt_test_vs_ctrl_m5 1.000 1.000 11 11 11 11 1.0000 1.0000 1.0000 D 0
oligos_7nt_test_vs_ctrl_m1 oligos_7nt_test_vs_ctrl_m1 oligos_7nt_test_vs_ctrl_m1 oligos_7nt_test_vs_ctrl_m1 1.000 1.000 20 20 20 20 1.0000 1.0000 1.0000 D 0
oligos_7nt_test_vs_ctrl_m3 oligos_7nt_test_vs_ctrl_m3 oligos_7nt_test_vs_ctrl_m3 oligos_7nt_test_vs_ctrl_m3 1.000 1.000 13 13 13 13 1.0000 1.0000 1.0000 D 0
oligos_6nt_test_vs_ctrl_m4 oligos_6nt_test_vs_ctrl_m4 oligos_6nt_test_vs_ctrl_m4 oligos_6nt_test_vs_ctrl_m4 1.000 1.000 14 14 14 14 1.0000 1.0000 1.0000 D 0
oligos_6nt_test_vs_ctrl_m3 oligos_6nt_test_vs_ctrl_m3 oligos_6nt_test_vs_ctrl_m3 oligos_6nt_test_vs_ctrl_m3 1.000 1.000 19 19 19 19 1.0000 1.0000 1.0000 D 0
oligos_7nt_test_vs_ctrl_m4 oligos_7nt_test_vs_ctrl_m4 oligos_7nt_test_vs_ctrl_m4 oligos_7nt_test_vs_ctrl_m4 1.000 1.000 14 14 14 14 1.0000 1.0000 1.0000 D 0
oligos_7nt_test_vs_ctrl_m5 oligos_7nt_test_vs_ctrl_m5 oligos_7nt_test_vs_ctrl_m5 oligos_7nt_test_vs_ctrl_m5 1.000 1.000 16 16 16 16 1.0000 1.0000 1.0000 D 0
oligos_7nt_test_vs_ctrl_m2 oligos_7nt_test_vs_ctrl_m2 oligos_7nt_test_vs_ctrl_m2 oligos_7nt_test_vs_ctrl_m2 1.000 1.000 23 23 23 23 1.0000 1.0000 1.0000 D 0
oligos_6nt_test_vs_ctrl_m1 oligos_6nt_test_vs_ctrl_m1 oligos_6nt_test_vs_ctrl_m1 oligos_6nt_test_vs_ctrl_m1 1.000 1.000 18 18 18 18 1.0000 1.0000 1.0000 D 0
oligos_6nt_test_vs_ctrl_m2 oligos_6nt_test_vs_ctrl_m3 oligos_6nt_test_vs_ctrl_m2 oligos_6nt_test_vs_ctrl_m3 0.864 0.864 19 19 19 19 1.0000 1.0000 1.0000 D 0
oligos_6nt_test_vs_ctrl_m3 oligos_6nt_test_vs_ctrl_m2 oligos_6nt_test_vs_ctrl_m3 oligos_6nt_test_vs_ctrl_m2 0.864 0.864 19 19 19 19 1.0000 1.0000 1.0000 D 0
oligos_6nt_test_vs_ctrl_m1 oligos_7nt_test_vs_ctrl_m1 oligos_6nt_test_vs_ctrl_m1 oligos_7nt_test_vs_ctrl_m1 0.937 0.844 18 20 18 20 0.9000 1.0000 0.9000 D 0
oligos_7nt_test_vs_ctrl_m1 oligos_6nt_test_vs_ctrl_m1 oligos_7nt_test_vs_ctrl_m1 oligos_6nt_test_vs_ctrl_m1 0.937 0.844 20 18 18 20 0.9000 0.9000 1.0000 D 0
oligos_6nt_test_vs_ctrl_m3 oligos_6nt_test_vs_ctrl_m1 oligos_6nt_test_vs_ctrl_m3 oligos_6nt_test_vs_ctrl_m1 0.862 0.817 19 18 18 19 0.9474 0.9474 1.0000 D 1
oligos_6nt_test_vs_ctrl_m1 oligos_6nt_test_vs_ctrl_m3 oligos_6nt_test_vs_ctrl_m1 oligos_6nt_test_vs_ctrl_m3 0.862 0.817 18 19 18 19 0.9474 1.0000 0.9474 D -1
oligos_6nt_test_vs_ctrl_m2 oligos_6nt_test_vs_ctrl_m1 oligos_6nt_test_vs_ctrl_m2 oligos_6nt_test_vs_ctrl_m1 0.833 0.789 19 18 18 19 0.9474 0.9474 1.0000 D 1
oligos_6nt_test_vs_ctrl_m1 oligos_6nt_test_vs_ctrl_m2 oligos_6nt_test_vs_ctrl_m1 oligos_6nt_test_vs_ctrl_m2 0.833 0.789 18 19 18 19 0.9474 1.0000 0.9474 D -1
oligos_6nt_test_vs_ctrl_m2 oligos_7nt_test_vs_ctrl_m2 oligos_6nt_test_vs_ctrl_m2 oligos_7nt_test_vs_ctrl_m2 0.926 0.765 19 23 19 23 0.8261 1.0000 0.8261 D -2
oligos_7nt_test_vs_ctrl_m2 oligos_6nt_test_vs_ctrl_m2 oligos_7nt_test_vs_ctrl_m2 oligos_6nt_test_vs_ctrl_m2 0.926 0.765 23 19 19 23 0.8261 0.8261 1.0000 D 2
oligos_6nt_test_vs_ctrl_m5 oligos_7nt_test_vs_ctrl_m3 oligos_6nt_test_vs_ctrl_m5 oligos_7nt_test_vs_ctrl_m3 0.895 0.757 11 13 11 13 0.8462 1.0000 0.8462 R -1
oligos_7nt_test_vs_ctrl_m3 oligos_6nt_test_vs_ctrl_m5 oligos_7nt_test_vs_ctrl_m3 oligos_6nt_test_vs_ctrl_m5 0.895 0.757 13 11 11 13 0.8462 0.8462 1.0000 R 1
oligos_7nt_test_vs_ctrl_m1 oligos_7nt_test_vs_ctrl_m2 oligos_7nt_test_vs_ctrl_m1 oligos_7nt_test_vs_ctrl_m2 0.865 0.752 20 23 20 23 0.8696 1.0000 0.8696 D -3
oligos_7nt_test_vs_ctrl_m2 oligos_7nt_test_vs_ctrl_m1 oligos_7nt_test_vs_ctrl_m2 oligos_7nt_test_vs_ctrl_m1 0.865 0.752 23 20 20 23 0.8696 0.8696 1.0000 D 3
oligos_6nt_test_vs_ctrl_m3 oligos_7nt_test_vs_ctrl_m5 oligos_6nt_test_vs_ctrl_m3 oligos_7nt_test_vs_ctrl_m5 0.889 0.749 19 16 16 19 0.8421 0.8421 1.0000 D 0
oligos_7nt_test_vs_ctrl_m5 oligos_6nt_test_vs_ctrl_m3 oligos_7nt_test_vs_ctrl_m5 oligos_6nt_test_vs_ctrl_m3 0.889 0.749 16 19 16 19 0.8421 1.0000 0.8421 D 0
oligos_6nt_test_vs_ctrl_m3 oligos_7nt_test_vs_ctrl_m1 oligos_6nt_test_vs_ctrl_m3 oligos_7nt_test_vs_ctrl_m1 0.819 0.702 19 20 18 21 0.8571 0.9474 0.9000 D 1
oligos_7nt_test_vs_ctrl_m1 oligos_6nt_test_vs_ctrl_m3 oligos_7nt_test_vs_ctrl_m1 oligos_6nt_test_vs_ctrl_m3 0.819 0.702 20 19 18 21 0.8571 0.9000 0.9474 D -1
oligos_6nt_test_vs_ctrl_m2 oligos_7nt_test_vs_ctrl_m1 oligos_6nt_test_vs_ctrl_m2 oligos_7nt_test_vs_ctrl_m1 0.791 0.678 19 20 18 21 0.8571 0.9474 0.9000 D 1
oligos_7nt_test_vs_ctrl_m1 oligos_6nt_test_vs_ctrl_m2 oligos_7nt_test_vs_ctrl_m1 oligos_6nt_test_vs_ctrl_m2 0.791 0.678 20 19 18 21 0.8571 0.9000 0.9474 D -1
oligos_6nt_test_vs_ctrl_m3 oligos_7nt_test_vs_ctrl_m2 oligos_6nt_test_vs_ctrl_m3 oligos_7nt_test_vs_ctrl_m2 0.797 0.658 19 23 19 23 0.8261 1.0000 0.8261 D -2
oligos_7nt_test_vs_ctrl_m2 oligos_6nt_test_vs_ctrl_m3 oligos_7nt_test_vs_ctrl_m2 oligos_6nt_test_vs_ctrl_m3 0.797 0.658 23 19 19 23 0.8261 0.8261 1.0000 D 2
oligos_6nt_test_vs_ctrl_m2 oligos_7nt_test_vs_ctrl_m5 oligos_6nt_test_vs_ctrl_m2 oligos_7nt_test_vs_ctrl_m5 0.758 0.638 19 16 16 19 0.8421 0.8421 1.0000 D 0
oligos_7nt_test_vs_ctrl_m5 oligos_6nt_test_vs_ctrl_m2 oligos_7nt_test_vs_ctrl_m5 oligos_6nt_test_vs_ctrl_m2 0.758 0.638 16 19 16 19 0.8421 1.0000 0.8421 D 0
oligos_6nt_test_vs_ctrl_m1 oligos_7nt_test_vs_ctrl_m2 oligos_6nt_test_vs_ctrl_m1 oligos_7nt_test_vs_ctrl_m2 0.811 0.635 18 23 18 23 0.7826 1.0000 0.7826 D -3
oligos_7nt_test_vs_ctrl_m2 oligos_6nt_test_vs_ctrl_m1 oligos_7nt_test_vs_ctrl_m2 oligos_6nt_test_vs_ctrl_m1 0.811 0.635 23 18 18 23 0.7826 0.7826 1.0000 D 3
oligos_7nt_test_vs_ctrl_m1 oligos_7nt_test_vs_ctrl_m5 oligos_7nt_test_vs_ctrl_m1 oligos_7nt_test_vs_ctrl_m5 0.774 0.620 20 16 16 20 0.8000 0.8000 1.0000 D 3
oligos_7nt_test_vs_ctrl_m5 oligos_7nt_test_vs_ctrl_m1 oligos_7nt_test_vs_ctrl_m5 oligos_7nt_test_vs_ctrl_m1 0.774 0.620 16 20 16 20 0.8000 1.0000 0.8000 D -3
oligos_6nt_test_vs_ctrl_m1 oligos_7nt_test_vs_ctrl_m5 oligos_6nt_test_vs_ctrl_m1 oligos_7nt_test_vs_ctrl_m5 0.769 0.607 18 16 15 19 0.7895 0.8333 0.9375 D -1
oligos_7nt_test_vs_ctrl_m5 oligos_6nt_test_vs_ctrl_m1 oligos_7nt_test_vs_ctrl_m5 oligos_6nt_test_vs_ctrl_m1 0.769 0.607 16 18 15 19 0.7895 0.9375 0.8333 D 1
oligos_7nt_test_vs_ctrl_m5 oligos_7nt_test_vs_ctrl_m2 oligos_7nt_test_vs_ctrl_m5 oligos_7nt_test_vs_ctrl_m2 0.793 0.552 16 23 16 23 0.6957 1.0000 0.6957 D -2
oligos_7nt_test_vs_ctrl_m2 oligos_7nt_test_vs_ctrl_m5 oligos_7nt_test_vs_ctrl_m2 oligos_7nt_test_vs_ctrl_m5 0.793 0.552 23 16 16 23 0.6957 0.6957 1.0000 D 2
oligos_7nt_test_vs_ctrl_m3 oligos_6nt_test_vs_ctrl_m2 oligos_7nt_test_vs_ctrl_m3 oligos_6nt_test_vs_ctrl_m2 0.707 0.484 13 19 13 19 0.6842 1.0000 0.6842 D -1
oligos_6nt_test_vs_ctrl_m2 oligos_7nt_test_vs_ctrl_m3 oligos_6nt_test_vs_ctrl_m2 oligos_7nt_test_vs_ctrl_m3 0.707 0.484 19 13 13 19 0.6842 0.6842 1.0000 D 1
oligos_6nt_test_vs_ctrl_m5 oligos_6nt_test_vs_ctrl_m2 oligos_6nt_test_vs_ctrl_m5 oligos_6nt_test_vs_ctrl_m2 0.782 0.452 11 19 11 19 0.5789 1.0000 0.5789 D -2
oligos_6nt_test_vs_ctrl_m2 oligos_6nt_test_vs_ctrl_m5 oligos_6nt_test_vs_ctrl_m2 oligos_6nt_test_vs_ctrl_m5 0.782 0.452 19 11 11 19 0.5789 0.5789 1.0000 D 2
oligos_7nt_test_vs_ctrl_m2 oligos_7nt_test_vs_ctrl_m3 oligos_7nt_test_vs_ctrl_m2 oligos_7nt_test_vs_ctrl_m3 0.708 0.400 23 13 13 23 0.5652 0.5652 1.0000 D 3
oligos_7nt_test_vs_ctrl_m3 oligos_7nt_test_vs_ctrl_m2 oligos_7nt_test_vs_ctrl_m3 oligos_7nt_test_vs_ctrl_m2 0.708 0.400 13 23 13 23 0.5652 1.0000 0.5652 D -3 
 Host name	rsat
 Job started	2026-05-18.120909
 Job done	2026-05-18.120921
 Seconds	1.07
	user	1.07
	system	0.45
	cuser	9.26
;	csystem	1.2