position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2026/05/18/peak-motifs.2026-05-18.122218_2026-05-18.122218_kgALDz/data/sequences/peak-motifs_ctrl_maxlen2000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 1 -ci 20 -img_format png -title top30 -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2026/05/18/peak-motifs.2026-05-18.122218_2026-05-18.122218_kgALDz/results/composition/peak-motifs_ctrl_profiles-1str-ovlp_1nt_ci20.tab Citation: van Helden, et al. (2000). Nucleic Acids Res 28, 1000-1010. Sequence file $RSAT/public_html/tmp/www-data/2026/05/18/peak-motifs.2026-05-18.122218_2026-05-18.122218_kgALDz/data/sequences/peak-motifs_ctrl_maxlen2000_purged_ml40_mis3.fasta Sequence format fasta Sequence type dna Output file $RSAT/public_html/tmp/www-data/2026/05/18/peak-motifs.2026-05-18.122218_2026-05-18.122218_kgALDz/results/composition/peak-motifs_ctrl_profiles-1str-ovlp_1nt_ci20.tab Oligo length 1 Occurrences counted on a single strands Conditions of applicability checked. Background model estimation: homogeneous repartition Sequence statistics: Nb of sequences 305 Sum of sequence lengths 551496 Min sequence length 0 Max sequence length 2000 Average sequence length 1808 Possible positions 551496 Oligonucleotide statistics: Total occurrences 533954 Position interval parameters: Position interval 20 Number of windows 100 Total positions 551496 Degrees of freedom 99 K-mer clustering parameters: Number of clusters 0 Clustering method complete Position intervals: window [min,max] mid seq occ 1 -50 [-999,-980] -989.5 226 4496 2 -49 [-979,-960] -969.5 231 4591 3 -48 [-959,-940] -949.5 234 4651 4 -47 [-939,-920] -929.5 235 4693 5 -46 [-919,-900] -909.5 236 4708 6 -45 [-899,-880] -889.5 239 4750 7 -44 [-879,-860] -869.5 245 4861 8 -43 [-859,-840] -849.5 246 4907 9 -42 [-839,-820] -829.5 246 4920 10 -41 [-819,-800] -809.5 249 4938 11 -40 [-799,-780] -789.5 251 5004 12 -39 [-779,-760] -769.5 252 5021 13 -38 [-759,-740] -749.5 254 5058 14 -37 [-739,-720] -729.5 255 5092 15 -36 [-719,-700] -709.5 256 5101 16 -35 [-699,-680] -689.5 256 5120 17 -34 [-679,-660] -669.5 257 5132 18 -33 [-659,-640] -649.5 261 5179 19 -32 [-639,-620] -629.5 263 5254 20 -31 [-619,-600] -609.5 264 5264 21 -30 [-599,-580] -589.5 267 5303 22 -29 [-579,-560] -569.5 270 5363 23 -28 [-559,-540] -549.5 273 5408 24 -27 [-539,-520] -529.5 280 5549 25 -26 [-519,-500] -509.5 284 5660 26 -25 [-499,-480] -489.5 284 5680 27 -24 [-479,-460] -469.5 287 5708 28 -23 [-459,-440] -449.5 290 5790 29 -22 [-439,-420] -429.5 292 5818 30 -21 [-419,-400] -409.5 293 5843 31 -20 [-399,-380] -389.5 295 5884 32 -19 [-379,-360] -369.5 295 5900 33 -18 [-359,-340] -349.5 296 5918 34 -17 [-339,-320] -329.5 298 5935 35 -16 [-319,-300] -309.5 301 6005 36 -15 [-299,-280] -289.5 301 6020 37 -14 [-279,-260] -269.5 303 6046 38 -13 [-259,-240] -249.5 304 6064 39 -12 [-239,-220] -229.5 304 6080 40 -11 [-219,-200] -209.5 305 6087 41 -10 [-199,-180] -189.5 305 6100 42 -9 [-179,-160] -169.5 305 6100 43 -8 [-159,-140] -149.5 305 6100 44 -7 [-139,-120] -129.5 305 6100 45 -6 [-119,-100] -109.5 305 6100 46 -5 [-99,-80] -89.5 305 6100 47 -4 [-79,-60] -69.5 305 6100 48 -3 [-59,-40] -49.5 305 6100 49 -2 [-39,-20] -29.5 305 6100 50 -1 [-19,0] -9.5 305 6100 51 0 [1,20] 10.5 305 6100 52 1 [21,40] 30.5 305 6100 53 2 [41,60] 50.5 305 6100 54 3 [61,80] 70.5 305 6100 55 4 [81,100] 90.5 305 6100 56 5 [101,120] 110.5 305 6100 57 6 [121,140] 130.5 305 6100 58 7 [141,160] 150.5 305 6100 59 8 [161,180] 170.5 305 6100 60 9 [181,200] 190.5 305 6100 61 10 [201,220] 210.5 305 6086 62 11 [221,240] 230.5 304 6080 63 12 [241,260] 250.5 304 6063 64 13 [261,280] 270.5 303 6043 65 14 [281,300] 290.5 301 6020 66 15 [301,320] 310.5 301 6001 67 16 [321,340] 330.5 298 5933 68 17 [341,360] 350.5 296 5917 69 18 [361,380] 370.5 295 5900 70 19 [381,400] 390.5 295 5882 71 20 [401,420] 410.5 293 5842 72 21 [421,440] 430.5 292 5817 73 22 [441,460] 450.5 290 5784 74 23 [461,480] 470.5 286 5703 75 24 [481,500] 490.5 284 5680 76 25 [501,520] 510.5 284 5653 77 26 [521,540] 530.5 279 5538 78 27 [541,560] 550.5 272 5405 79 28 [561,580] 570.5 269 5362 80 29 [581,600] 590.5 267 5300 81 30 [601,620] 610.5 264 5262 82 31 [621,640] 630.5 263 5253 83 32 [641,660] 650.5 261 5175 84 33 [661,680] 670.5 257 5130 85 34 [681,700] 690.5 256 5120 86 35 [701,720] 710.5 255 5100 87 36 [721,740] 730.5 255 5090 88 37 [741,760] 750.5 254 5056 89 38 [761,780] 770.5 251 5020 90 39 [781,800] 790.5 251 5001 91 40 [801,820] 810.5 247 4932 92 41 [821,840] 830.5 246 4920 93 42 [841,860] 850.5 246 4906 94 43 [861,880] 870.5 245 4852 95 44 [881,900] 890.5 239 4747 96 45 [901,920] 910.5 236 4707 97 46 [921,940] 930.5 235 4692 98 47 [941,960] 950.5 233 4647 99 48 [961,980] 970.5 231 4586 100 49 [981,1000] 990.5 226 4490 Column headers 1 seq pattern sequence 2 id pattern identifier 3 occ pattern occurrences 4 chi2 observed chi-square 5 df degrees of freedom 6 Pval P-value (probability for one word to be a false positive) 7 Eval E-value; expected number of false positives (Eval = Pval * nb_tests) 8 sig Significance (sig = -log10(Eval)) 9 rank rank of the pattern according to sorting criterion 10 -989.5 occurrences in window 1 [-999,-980] 11 -969.5 occurrences in window 2 [-979,-960] 12 -949.5 occurrences in window 3 [-959,-940] 13 -929.5 occurrences in window 4 [-939,-920] 14 -909.5 occurrences in window 5 [-919,-900] 15 -889.5 occurrences in window 6 [-899,-880] 16 -869.5 occurrences in window 7 [-879,-860] 17 -849.5 occurrences in window 8 [-859,-840] 18 -829.5 occurrences in window 9 [-839,-820] 19 -809.5 occurrences in window 10 [-819,-800] 20 -789.5 occurrences in window 11 [-799,-780] 21 -769.5 occurrences in window 12 [-779,-760] 22 -749.5 occurrences in window 13 [-759,-740] 23 -729.5 occurrences in window 14 [-739,-720] 24 -709.5 occurrences in window 15 [-719,-700] 25 -689.5 occurrences in window 16 [-699,-680] 26 -669.5 occurrences in window 17 [-679,-660] 27 -649.5 occurrences in window 18 [-659,-640] 28 -629.5 occurrences in window 19 [-639,-620] 29 -609.5 occurrences in window 20 [-619,-600] 30 -589.5 occurrences in window 21 [-599,-580] 31 -569.5 occurrences in window 22 [-579,-560] 32 -549.5 occurrences in window 23 [-559,-540] 33 -529.5 occurrences in window 24 [-539,-520] 34 -509.5 occurrences in window 25 [-519,-500] 35 -489.5 occurrences in window 26 [-499,-480] 36 -469.5 occurrences in window 27 [-479,-460] 37 -449.5 occurrences in window 28 [-459,-440] 38 -429.5 occurrences in window 29 [-439,-420] 39 -409.5 occurrences in window 30 [-419,-400] 40 -389.5 occurrences in window 31 [-399,-380] 41 -369.5 occurrences in window 32 [-379,-360] 42 -349.5 occurrences in window 33 [-359,-340] 43 -329.5 occurrences in window 34 [-339,-320] 44 -309.5 occurrences in window 35 [-319,-300] 45 -289.5 occurrences in window 36 [-299,-280] 46 -269.5 occurrences in window 37 [-279,-260] 47 -249.5 occurrences in window 38 [-259,-240] 48 -229.5 occurrences in window 39 [-239,-220] 49 -209.5 occurrences in window 40 [-219,-200] 50 -189.5 occurrences in window 41 [-199,-180] 51 -169.5 occurrences in window 42 [-179,-160] 52 -149.5 occurrences in window 43 [-159,-140] 53 -129.5 occurrences in window 44 [-139,-120] 54 -109.5 occurrences in window 45 [-119,-100] 55 -89.5 occurrences in window 46 [-99,-80] 56 -69.5 occurrences in window 47 [-79,-60] 57 -49.5 occurrences in window 48 [-59,-40] 58 -29.5 occurrences in window 49 [-39,-20] 59 -9.5 occurrences in window 50 [-19,0] 60 10.5 occurrences in window 51 [1,20] 61 30.5 occurrences in window 52 [21,40] 62 50.5 occurrences in window 53 [41,60] 63 70.5 occurrences in window 54 [61,80] 64 90.5 occurrences in window 55 [81,100] 65 110.5 occurrences in window 56 [101,120] 66 130.5 occurrences in window 57 [121,140] 67 150.5 occurrences in window 58 [141,160] 68 170.5 occurrences in window 59 [161,180] 69 190.5 occurrences in window 60 [181,200] 70 210.5 occurrences in window 61 [201,220] 71 230.5 occurrences in window 62 [221,240] 72 250.5 occurrences in window 63 [241,260] 73 270.5 occurrences in window 64 [261,280] 74 290.5 occurrences in window 65 [281,300] 75 310.5 occurrences in window 66 [301,320] 76 330.5 occurrences in window 67 [321,340] 77 350.5 occurrences in window 68 [341,360] 78 370.5 occurrences in window 69 [361,380] 79 390.5 occurrences in window 70 [381,400] 80 410.5 occurrences in window 71 [401,420] 81 430.5 occurrences in window 72 [421,440] 82 450.5 occurrences in window 73 [441,460] 83 470.5 occurrences in window 74 [461,480] 84 490.5 occurrences in window 75 [481,500] 85 510.5 occurrences in window 76 [501,520] 86 530.5 occurrences in window 77 [521,540] 87 550.5 occurrences in window 78 [541,560] 88 570.5 occurrences in window 79 [561,580] 89 590.5 occurrences in window 80 [581,600] 90 610.5 occurrences in window 81 [601,620] 91 630.5 occurrences in window 82 [621,640] 92 650.5 occurrences in window 83 [641,660] 93 670.5 occurrences in window 84 [661,680] 94 690.5 occurrences in window 85 [681,700] 95 710.5 occurrences in window 86 [701,720] 96 730.5 occurrences in window 87 [721,740] 97 750.5 occurrences in window 88 [741,760] 98 770.5 occurrences in window 89 [761,780] 99 790.5 occurrences in window 90 [781,800] 100 810.5 occurrences in window 91 [801,820] 101 830.5 occurrences in window 92 [821,840] 102 850.5 occurrences in window 93 [841,860] 103 870.5 occurrences in window 94 [861,880] 104 890.5 occurrences in window 95 [881,900] 105 910.5 occurrences in window 96 [901,920] 106 930.5 occurrences in window 97 [921,940] 107 950.5 occurrences in window 98 [941,960] 108 970.5 occurrences in window 99 [961,980] 109 990.5 occurrences in window 100 [981,1000]
| seq | id | occ | chi2 | df | Pval | Eval | sig | rank | -989.5 | -969.5 | -949.5 | -929.5 | -909.5 | -889.5 | -869.5 | -849.5 | -829.5 | -809.5 | -789.5 | -769.5 | -749.5 | -729.5 | -709.5 | -689.5 | -669.5 | -649.5 | -629.5 | -609.5 | -589.5 | -569.5 | -549.5 | -529.5 | -509.5 | -489.5 | -469.5 | -449.5 | -429.5 | -409.5 | -389.5 | -369.5 | -349.5 | -329.5 | -309.5 | -289.5 | -269.5 | -249.5 | -229.5 | -209.5 | -189.5 | -169.5 | -149.5 | -129.5 | -109.5 | -89.5 | -69.5 | -49.5 | -29.5 | -9.5 | 10.5 | 30.5 | 50.5 | 70.5 | 90.5 | 110.5 | 130.5 | 150.5 | 170.5 | 190.5 | 210.5 | 230.5 | 250.5 | 270.5 | 290.5 | 310.5 | 330.5 | 350.5 | 370.5 | 390.5 | 410.5 | 430.5 | 450.5 | 470.5 | 490.5 | 510.5 | 530.5 | 550.5 | 570.5 | 590.5 | 610.5 | 630.5 | 650.5 | 670.5 | 690.5 | 710.5 | 730.5 | 750.5 | 770.5 | 790.5 | 810.5 | 830.5 | 850.5 | 870.5 | 890.5 | 910.5 | 930.5 | 950.5 | 970.5 | 990.5 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| g | g | 61422 | 147.8 | 99 | 1.1e-03 | 0.0044 | 2.36 | 1 | 537 | 532 | 544 | 571 | 556 | 540 | 553 | 579 | 531 | 524 | 572 | 570 | 620 | 655 | 614 | 572 | 611 | 588 | 559 | 604 | 611 | 648 | 629 | 622 | 624 | 681 | 639 | 631 | 646 | 607 | 656 | 661 | 679 | 665 | 658 | 701 | 674 | 649 | 658 | 687 | 641 | 629 | 649 | 669 | 717 | 668 | 650 | 669 | 629 | 652 | 624 | 685 | 700 | 686 | 608 | 684 | 683 | 656 | 665 | 682 | 674 | 666 | 676 | 676 | 700 | 640 | 606 | 652 | 629 | 612 | 606 | 652 | 667 | 606 | 609 | 585 | 585 | 639 | 587 | 612 | 640 | 568 | 527 | 633 | 579 | 528 | 567 | 542 | 550 | 538 | 586 | 547 | 539 | 508 | 516 | 565 | 520 | 551 | 523 | 512 |
| c | c | 59480 | 135.3 | 99 | 9.0e-03 | 0.036 | 1.45 | 2 | 441 | 478 | 469 | 540 | 515 | 544 | 531 | 548 | 522 | 614 | 566 | 573 | 569 | 544 | 587 | 520 | 549 | 539 | 568 | 552 | 556 | 578 | 585 | 647 | 648 | 608 | 656 | 612 | 637 | 614 | 663 | 667 | 605 | 673 | 669 | 652 | 619 | 638 | 672 | 629 | 690 | 661 | 637 | 690 | 674 | 698 | 677 | 624 | 690 | 719 | 646 | 617 | 600 | 672 | 651 | 637 | 632 | 668 | 679 | 667 | 645 | 641 | 638 | 724 | 669 | 622 | 582 | 635 | 647 | 607 | 639 | 630 | 623 | 666 | 558 | 557 | 604 | 523 | 581 | 607 | 548 | 569 | 537 | 531 | 569 | 536 | 522 | 506 | 533 | 523 | 543 | 553 | 518 | 517 | 519 | 510 | 511 | 487 | 483 | 441 |
| t | t | 204516 | 119.2 | 99 | 8.1e-02 | 0.32 | 0.49 | 3 | 1701 | 1771 | 1788 | 1775 | 1756 | 1743 | 1821 | 1849 | 1831 | 1822 | 1812 | 1908 | 1828 | 1800 | 1798 | 1874 | 1882 | 1989 | 1964 | 1926 | 2055 | 1955 | 1999 | 2013 | 2099 | 2117 | 2171 | 2120 | 2070 | 2174 | 2257 | 2142 | 2196 | 2150 | 2182 | 2173 | 2267 | 2302 | 2126 | 2220 | 2139 | 2331 | 2296 | 2279 | 2166 | 2185 | 2204 | 2282 | 2281 | 2292 | 2267 | 2226 | 2292 | 2224 | 2326 | 2207 | 2270 | 2290 | 2287 | 2199 | 2254 | 2208 | 2297 | 2300 | 2254 | 2329 | 2251 | 2251 | 2227 | 2269 | 2146 | 2160 | 2183 | 2127 | 2107 | 2132 | 2108 | 1974 | 2006 | 1984 | 1936 | 2002 | 2036 | 1938 | 1860 | 1939 | 1846 | 1823 | 1848 | 1857 | 1738 | 1818 | 1803 | 1828 | 1750 | 1691 | 1732 | 1674 | 1662 | 1699 |
| a | a | 208536 | 81.7 | 99 | 9.0e-01 | 3.6 | -0.55 | 4 | 1769 | 1748 | 1772 | 1738 | 1793 | 1823 | 1890 | 1801 | 1894 | 1844 | 1958 | 1862 | 1916 | 1942 | 1909 | 1986 | 1966 | 1914 | 1943 | 1995 | 1924 | 2045 | 2022 | 2080 | 2105 | 2102 | 2057 | 2179 | 2198 | 2215 | 2149 | 2272 | 2246 | 2302 | 2312 | 2291 | 2261 | 2205 | 2368 | 2328 | 2394 | 2294 | 2389 | 2305 | 2348 | 2302 | 2304 | 2316 | 2334 | 2253 | 2317 | 2329 | 2274 | 2281 | 2303 | 2341 | 2271 | 2284 | 2251 | 2334 | 2285 | 2309 | 2246 | 2200 | 2297 | 2276 | 2354 | 2252 | 2228 | 2207 | 2267 | 2190 | 2118 | 2059 | 2128 | 2119 | 2052 | 2080 | 2018 | 1944 | 1998 | 2006 | 1975 | 1928 | 1991 | 1931 | 1952 | 1961 | 1866 | 1906 | 1853 | 1802 | 1857 | 1833 | 1802 | 1790 | 1803 | 1815 | 1778 | 1712 |
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