/var/www/html/rsat/public_html/tmp/www-data/2026/05/18/peak-motifs.2026-05-18.122218_2026-05-18.122218_kgALDz/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab 
 compare-matrices  -v 1 -format transfac -file $RSAT/public_html/tmp/www-data/2026/05/18/peak-motifs.2026-05-18.122218_2026-05-18.122218_kgALDz/results/discovered_motifs/peak-motifs_motifs_discovered.tf -distinct -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/05/18/peak-motifs.2026-05-18.122218_2026-05-18.122218_kgALDz/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/tmp/www-data/2026/05/18/peak-motifs.2026-05-18.122218_2026-05-18.122218_kgALDz/results/discovered_motifs/peak-motifs_motifs_discovered.tf
	file1 	$RSAT/public_html/tmp/www-data/2026/05/18/peak-motifs.2026-05-18.122218_2026-05-18.122218_kgALDz/results/discovered_motifs/peak-motifs_motifs_discovered.tf
 Output files
	alignments_1ton_html	$RSAT/public_html/tmp/www-data/2026/05/18/peak-motifs.2026-05-18.122218_2026-05-18.122218_kgALDz/results/discovered_motifs/peak-motifs_motifs_disco_compa_alignments_1ton.html
	alignments_1ton	$RSAT/public_html/tmp/www-data/2026/05/18/peak-motifs.2026-05-18.122218_2026-05-18.122218_kgALDz/results/discovered_motifs/peak-motifs_motifs_disco_compa_alignments_1ton.tab
	prefix       	$RSAT/public_html/tmp/www-data/2026/05/18/peak-motifs.2026-05-18.122218_2026-05-18.122218_kgALDz/results/discovered_motifs/peak-motifs_motifs_disco_compa
	match_table_html	$RSAT/public_html/tmp/www-data/2026/05/18/peak-motifs.2026-05-18.122218_2026-05-18.122218_kgALDz/results/discovered_motifs/peak-motifs_motifs_disco_compa.html
	html_index   	$RSAT/public_html/tmp/www-data/2026/05/18/peak-motifs.2026-05-18.122218_2026-05-18.122218_kgALDz/results/discovered_motifs/peak-motifs_motifs_disco_compa_index.html
	match_table_txt	$RSAT/public_html/tmp/www-data/2026/05/18/peak-motifs.2026-05-18.122218_2026-05-18.122218_kgALDz/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab
 Matrices
	file1	10 matrices	$RSAT/public_html/tmp/www-data/2026/05/18/peak-motifs.2026-05-18.122218_2026-05-18.122218_kgALDz/results/discovered_motifs/peak-motifs_motifs_discovered.tf
		file1	1	16	987
		file1	2	17	857
		file1	3	15	460
		file1	4	15	747
		file1	5	21	406
		file1	6	17	1089
		file1	7	22	453
		file1	8	19	590
		file1	9	14	715
		file1	10	20	427
	file2	10 matrices	$RSAT/public_html/tmp/www-data/2026/05/18/peak-motifs.2026-05-18.122218_2026-05-18.122218_kgALDz/results/discovered_motifs/peak-motifs_motifs_discovered.tf
		file2		1		16		987
		file2		2		17		857
		file2		3		15		460
		file2		4		15		747
		file2		5		21		406
		file2		6		17		1089
		file2		7		22		453
		file2		8		19		590
		file2		9		14		715
		file2		10		20		427
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_7nt_test_vs_ctrl_m2 oligos_7nt_test_vs_ctrl_m2 oligos_7nt_test_vs_ctrl_m2 oligos_7nt_test_vs_ctrl_m2 1.000 1.000 22 22 22 22 1.0000 1.0000 1.0000 D 0
oligos_6nt_test_vs_ctrl_m4 oligos_6nt_test_vs_ctrl_m4 oligos_6nt_test_vs_ctrl_m4 oligos_6nt_test_vs_ctrl_m4 1.000 1.000 15 15 15 15 1.0000 1.0000 1.0000 D 0
oligos_6nt_test_vs_ctrl_m5 oligos_6nt_test_vs_ctrl_m5 oligos_6nt_test_vs_ctrl_m5 oligos_6nt_test_vs_ctrl_m5 1.000 1.000 21 21 21 21 1.0000 1.0000 1.0000 D 0
oligos_7nt_test_vs_ctrl_m5 oligos_7nt_test_vs_ctrl_m5 oligos_7nt_test_vs_ctrl_m5 oligos_7nt_test_vs_ctrl_m5 1.000 1.000 20 20 20 20 1.0000 1.0000 1.0000 D 0
oligos_6nt_test_vs_ctrl_m2 oligos_6nt_test_vs_ctrl_m2 oligos_6nt_test_vs_ctrl_m2 oligos_6nt_test_vs_ctrl_m2 1.000 1.000 17 17 17 17 1.0000 1.0000 1.0000 D 0
oligos_7nt_test_vs_ctrl_m3 oligos_7nt_test_vs_ctrl_m3 oligos_7nt_test_vs_ctrl_m3 oligos_7nt_test_vs_ctrl_m3 1.000 1.000 19 19 19 19 1.0000 1.0000 1.0000 D 0
oligos_7nt_test_vs_ctrl_m1 oligos_7nt_test_vs_ctrl_m1 oligos_7nt_test_vs_ctrl_m1 oligos_7nt_test_vs_ctrl_m1 1.000 1.000 17 17 17 17 1.0000 1.0000 1.0000 D 0
oligos_6nt_test_vs_ctrl_m3 oligos_6nt_test_vs_ctrl_m3 oligos_6nt_test_vs_ctrl_m3 oligos_6nt_test_vs_ctrl_m3 1.000 1.000 15 15 15 15 1.0000 1.0000 1.0000 D 0
oligos_6nt_test_vs_ctrl_m1 oligos_6nt_test_vs_ctrl_m1 oligos_6nt_test_vs_ctrl_m1 oligos_6nt_test_vs_ctrl_m1 1.000 1.000 16 16 16 16 1.0000 1.0000 1.0000 D 0
oligos_7nt_test_vs_ctrl_m4 oligos_7nt_test_vs_ctrl_m4 oligos_7nt_test_vs_ctrl_m4 oligos_7nt_test_vs_ctrl_m4 1.000 1.000 14 14 14 14 1.0000 1.0000 1.0000 D 0
oligos_6nt_test_vs_ctrl_m1 oligos_7nt_test_vs_ctrl_m1 oligos_6nt_test_vs_ctrl_m1 oligos_7nt_test_vs_ctrl_m1 0.985 0.927 16 17 16 17 0.9412 1.0000 0.9412 D -1
oligos_7nt_test_vs_ctrl_m1 oligos_6nt_test_vs_ctrl_m1 oligos_7nt_test_vs_ctrl_m1 oligos_6nt_test_vs_ctrl_m1 0.985 0.927 17 16 16 17 0.9412 0.9412 1.0000 D 1
oligos_6nt_test_vs_ctrl_m2 oligos_7nt_test_vs_ctrl_m5 oligos_6nt_test_vs_ctrl_m2 oligos_7nt_test_vs_ctrl_m5 0.962 0.817 17 20 17 20 0.8500 1.0000 0.8500 D -3
oligos_7nt_test_vs_ctrl_m5 oligos_6nt_test_vs_ctrl_m2 oligos_7nt_test_vs_ctrl_m5 oligos_6nt_test_vs_ctrl_m2 0.962 0.817 20 17 17 20 0.8500 0.8500 1.0000 D 3
oligos_6nt_test_vs_ctrl_m2 oligos_7nt_test_vs_ctrl_m1 oligos_6nt_test_vs_ctrl_m2 oligos_7nt_test_vs_ctrl_m1 0.810 0.810 17 17 17 17 1.0000 1.0000 1.0000 D 0
oligos_7nt_test_vs_ctrl_m1 oligos_6nt_test_vs_ctrl_m2 oligos_7nt_test_vs_ctrl_m1 oligos_6nt_test_vs_ctrl_m2 0.810 0.810 17 17 17 17 1.0000 1.0000 1.0000 D 0
oligos_6nt_test_vs_ctrl_m2 oligos_6nt_test_vs_ctrl_m1 oligos_6nt_test_vs_ctrl_m2 oligos_6nt_test_vs_ctrl_m1 0.824 0.776 17 16 16 17 0.9412 0.9412 1.0000 D 1
oligos_6nt_test_vs_ctrl_m1 oligos_6nt_test_vs_ctrl_m2 oligos_6nt_test_vs_ctrl_m1 oligos_6nt_test_vs_ctrl_m2 0.824 0.776 16 17 16 17 0.9412 1.0000 0.9412 D -1
oligos_7nt_test_vs_ctrl_m4 oligos_6nt_test_vs_ctrl_m4 oligos_7nt_test_vs_ctrl_m4 oligos_6nt_test_vs_ctrl_m4 0.944 0.767 14 15 13 16 0.8125 0.9286 0.8667 D -2
oligos_6nt_test_vs_ctrl_m4 oligos_7nt_test_vs_ctrl_m4 oligos_6nt_test_vs_ctrl_m4 oligos_7nt_test_vs_ctrl_m4 0.944 0.767 15 14 13 16 0.8125 0.8667 0.9286 D 2
oligos_7nt_test_vs_ctrl_m3 oligos_7nt_test_vs_ctrl_m2 oligos_7nt_test_vs_ctrl_m3 oligos_7nt_test_vs_ctrl_m2 0.887 0.766 19 22 19 22 0.8636 1.0000 0.8636 R -3
oligos_7nt_test_vs_ctrl_m2 oligos_7nt_test_vs_ctrl_m3 oligos_7nt_test_vs_ctrl_m2 oligos_7nt_test_vs_ctrl_m3 0.887 0.766 22 19 19 22 0.8636 0.8636 1.0000 R 0
oligos_6nt_test_vs_ctrl_m5 oligos_7nt_test_vs_ctrl_m1 oligos_6nt_test_vs_ctrl_m5 oligos_7nt_test_vs_ctrl_m1 0.871 0.705 21 17 17 21 0.8095 0.8095 1.0000 R 3
oligos_7nt_test_vs_ctrl_m1 oligos_6nt_test_vs_ctrl_m5 oligos_7nt_test_vs_ctrl_m1 oligos_6nt_test_vs_ctrl_m5 0.871 0.705 17 21 17 21 0.8095 1.0000 0.8095 R -1
oligos_7nt_test_vs_ctrl_m5 oligos_7nt_test_vs_ctrl_m1 oligos_7nt_test_vs_ctrl_m5 oligos_7nt_test_vs_ctrl_m1 0.812 0.691 20 17 17 20 0.8500 0.8500 1.0000 D 3
oligos_7nt_test_vs_ctrl_m1 oligos_7nt_test_vs_ctrl_m5 oligos_7nt_test_vs_ctrl_m1 oligos_7nt_test_vs_ctrl_m5 0.812 0.691 17 20 17 20 0.8500 1.0000 0.8500 D -3
oligos_7nt_test_vs_ctrl_m3 oligos_6nt_test_vs_ctrl_m3 oligos_7nt_test_vs_ctrl_m3 oligos_6nt_test_vs_ctrl_m3 0.859 0.679 19 15 15 19 0.7895 0.7895 1.0000 D 2
oligos_6nt_test_vs_ctrl_m3 oligos_7nt_test_vs_ctrl_m3 oligos_6nt_test_vs_ctrl_m3 oligos_7nt_test_vs_ctrl_m3 0.859 0.679 15 19 15 19 0.7895 1.0000 0.7895 D -2
oligos_7nt_test_vs_ctrl_m5 oligos_6nt_test_vs_ctrl_m1 oligos_7nt_test_vs_ctrl_m5 oligos_6nt_test_vs_ctrl_m1 0.821 0.657 20 16 16 20 0.8000 0.8000 1.0000 D 4
oligos_6nt_test_vs_ctrl_m1 oligos_7nt_test_vs_ctrl_m5 oligos_6nt_test_vs_ctrl_m1 oligos_7nt_test_vs_ctrl_m5 0.821 0.657 16 20 16 20 0.8000 1.0000 0.8000 D -4
oligos_7nt_test_vs_ctrl_m3 oligos_6nt_test_vs_ctrl_m5 oligos_7nt_test_vs_ctrl_m3 oligos_6nt_test_vs_ctrl_m5 0.798 0.653 19 21 18 22 0.8182 0.9474 0.8571 R -3
oligos_6nt_test_vs_ctrl_m5 oligos_7nt_test_vs_ctrl_m3 oligos_6nt_test_vs_ctrl_m5 oligos_7nt_test_vs_ctrl_m3 0.798 0.653 21 19 18 22 0.8182 0.8571 0.9474 R -1
oligos_6nt_test_vs_ctrl_m5 oligos_6nt_test_vs_ctrl_m1 oligos_6nt_test_vs_ctrl_m5 oligos_6nt_test_vs_ctrl_m1 0.843 0.642 21 16 16 21 0.7619 0.7619 1.0000 R 3
oligos_6nt_test_vs_ctrl_m1 oligos_6nt_test_vs_ctrl_m5 oligos_6nt_test_vs_ctrl_m1 oligos_6nt_test_vs_ctrl_m5 0.843 0.642 16 21 16 21 0.7619 1.0000 0.7619 R -2
oligos_7nt_test_vs_ctrl_m2 oligos_6nt_test_vs_ctrl_m3 oligos_7nt_test_vs_ctrl_m2 oligos_6nt_test_vs_ctrl_m3 0.934 0.637 22 15 15 22 0.6818 0.6818 1.0000 R 2
oligos_6nt_test_vs_ctrl_m3 oligos_7nt_test_vs_ctrl_m2 oligos_6nt_test_vs_ctrl_m3 oligos_7nt_test_vs_ctrl_m2 0.934 0.637 15 22 15 22 0.6818 1.0000 0.6818 R -5 
 Host name	rsat
 Job started	2026-05-18.122311
 Job done	2026-05-18.122319
 Seconds	0.55
	user	0.56
	system	0.33
	cuser	6.83
;	csystem	0.94