; pattern-assembly  -v 1 -i $RSAT/public_html/tmp/www-data/2026/05/18/peak-motifs.2026-05-18.122309_2026-05-18.122309_s78tRo/results/oligos_7nt_test_vs_ctrl/peak-motifs_oligos-2str-noov_7nt_test_vs_ctrl.tab -2str -maxfl 1 -subst 1 -max_asmb_width 20 -toppat 100 -max_asmb_size 50 -max_asmb_width 20 -max_asmb_nb 5 -o $RSAT/public_html/tmp/www-data/2026/05/18/peak-motifs.2026-05-18.122309_2026-05-18.122309_s78tRo/results/oligos_7nt_test_vs_ctrl/peak-motifs_oligos-2str-noov_7nt_test_vs_ctrl_pssm.asmb
; Input file	/var/www/html/rsat/public_html/tmp/www-data/2026/05/18/peak-motifs.2026-05-18.122309_2026-05-18.122309_s78tRo/results/oligos_7nt_test_vs_ctrl/peak-motifs_oligos-2str-noov_7nt_test_vs_ctrl.tab
; Output file	/var/www/html/rsat/public_html/tmp/www-data/2026/05/18/peak-motifs.2026-05-18.122309_2026-05-18.122309_s78tRo/results/oligos_7nt_test_vs_ctrl/peak-motifs_oligos-2str-noov_7nt_test_vs_ctrl_pssm.asmb
; Input score column           	8
; Output score column          	0
; Strand-insensitive assembly
; Max flanking bases           	1
; Max substitutions            	1
; Min matches                  	0
; Min weight                   	0
; Max assembly size            	50
; Max assembly width           	20
; Top number of patterns       	100
; Number of input patterns     	100
;

; assembly # 1	seed: aaacaaa	14 assembled patterns	length 20
;             alignt	             rev_cpl	score
aaagcaa.............	.............ttgcttt	5.05
.aagcaag............	............cttgctt.	11.18
..agcaagc...........	...........gcttgct..	15.69
...gcaagca..........	..........tgcttgc...	11.18
....caagcaa.........	.........ttgcttg....	7.16
.....aagcaaa........	........tttgctt.....	6.21
......agcaaac.......	.......gtttgct......	6.15
.......gcaaaca......	......tgtttgc.......	12.11
........caaacaa.....	.....ttgtttg........	15.77
.........aaacaaa....	....tttgttt.........	22.67
..........aacaaaa...	...ttttgtt..........	7.11
...........acaaaaa..	..tttttgt...........	5.11
............caaaaaa.	.ttttttg............	16.82
.............aaaaaaa	ttttttt.............	4.97
aaagcaagcaaacaaaaaaa	tttttttgtttgcttgcttt	22.67	best consensus

; assembly # 2	seed: gaatgaa	3 assembled patterns	length 9
;  alignt	  rev_cpl	score
ttgaatg..	..cattcaa	3.95
.tgaatga.	.tcattca.	8.82
..gaatgaa	ttcattc..	15.17
ttgaatgaa	ttcattcaa	15.17	best consensus

; assembly # 3	seed: gcaaaaa	11 assembled patterns	length 17
;          alignt	          rev_cpl	score
aaagcaa..........	..........ttgcttt	5.05
.aagcaag.........	.........cttgctt.	11.18
..agcaagc........	........gcttgct..	15.69
...gcaagca.......	.......tgcttgc...	11.18
....caagcaa......	......ttgcttg....	7.16
.....aagcaaa.....	.....tttgctt.....	6.21
......agcaaaa....	....ttttgct......	7.83
.......gcaaaaa...	...tttttgc.......	13.33
........caaaaaa..	..ttttttg........	16.82
.........aaaaaaa.	.ttttttt.........	4.97
..........aaaaaag	ctttttt..........	3.14
aaagcaagcaaaaaaag	ctttttttgcttgcttt	16.82	best consensus

; assembly # 4	seed: caatcaa	9 assembled patterns	length 15
;        alignt	        rev_cpl	score
ttcaatc........	........gattgaa	2.11
.tcaatca.......	.......tgattga.	9.98
..caatcaa......	......ttgattg..	12.63
...aatcaaa.....	.....tttgatt...	6.59
....atcaaaa....	....ttttgat....	3.99
.....tcaaaaa...	...tttttga.....	4.83
......caaaaaa..	..ttttttg......	16.82
.......aaaaaaa.	.ttttttt.......	4.97
........aaaaaag	ctttttt........	3.14
ttcaatcaaaaaaag	ctttttttgattgaa	16.82	best consensus

; assembly # 5	seed: caagcta	9 assembled patterns	length 15
;        alignt	        rev_cpl	score
gcaagca........	........tgcttgc	11.18
.caagcaa.......	.......ttgcttg.	7.16
..aagcaag......	......cttgctt..	11.18
...agcaagc.....	.....gcttgct...	15.69
....gcaagct....	....agcttgc....	3.20
.....caagcta...	...tagcttg.....	12.51
......aagctaa..	..ttagctt......	3.04
.......agctaag.	.cttagct.......	5.69
........gctaagc	gcttagc........	2.39
gcaagcaagctaagc	gcttagcttgcttgc	15.69	best consensus
; Maximal number of assemblies is reached (5). Remaining patterns: 68.
; Host name	rsat
; Job started	2026-05-18.122343
; Job done	2026-05-18.122347
; Seconds	3.97
;	user	3.97
;	system	0
;	cuser	0
;	csystem	0
