; pattern-assembly  -v 1 -i $RSAT/public_html/tmp/www-data/2026/05/18/peak-motifs.2026-05-18.122309_2026-05-18.122309_s78tRo/results/oligos_6nt_test_vs_ctrl/peak-motifs_oligos-2str-noov_6nt_test_vs_ctrl.tab -2str -maxfl 1 -subst 1 -max_asmb_width 20 -toppat 100 -max_asmb_size 50 -max_asmb_width 20 -max_asmb_nb 5 -o $RSAT/public_html/tmp/www-data/2026/05/18/peak-motifs.2026-05-18.122309_2026-05-18.122309_s78tRo/results/oligos_6nt_test_vs_ctrl/peak-motifs_oligos-2str-noov_6nt_test_vs_ctrl_pssm.asmb
; Input file	/var/www/html/rsat/public_html/tmp/www-data/2026/05/18/peak-motifs.2026-05-18.122309_2026-05-18.122309_s78tRo/results/oligos_6nt_test_vs_ctrl/peak-motifs_oligos-2str-noov_6nt_test_vs_ctrl.tab
; Output file	/var/www/html/rsat/public_html/tmp/www-data/2026/05/18/peak-motifs.2026-05-18.122309_2026-05-18.122309_s78tRo/results/oligos_6nt_test_vs_ctrl/peak-motifs_oligos-2str-noov_6nt_test_vs_ctrl_pssm.asmb
; Input score column           	8
; Output score column          	0
; Strand-insensitive assembly
; Max flanking bases           	1
; Max substitutions            	1
; Min matches                  	0
; Min weight                   	0
; Max assembly size            	50
; Max assembly width           	20
; Top number of patterns       	100
; Number of input patterns     	100
;

; assembly # 1	seed: caaaaa	14 assembled patterns	length 19
;            alignt	            rev_cpl	score
gagcaa.............	.............ttgctc	1.40
.agcaag............	............cttgct.	16.82
..gcaagc...........	...........gcttgc..	15.86
...caagca..........	..........tgcttg...	5.09
....aagcaa.........	.........ttgctt....	13.02
.....agcaaa........	........tttgct.....	12.69
......gcaaaa.......	.......ttttgc......	8.54
.......caaaaa......	......tttttg.......	24.02
........aaaaaa.....	.....tttttt........	8.86
.........aaaaag....	....cttttt.........	1.28
..........aaaaga...	...tctttt..........	0.86
...........aaagaa..	..ttcttt...........	6.49
............aagaaa.	.tttctt............	9.35
.............agaaag	ctttct.............	3.29
gagcaagcaaaaaagaaag	ctttcttttttgcttgctc	24.02	best consensus

; assembly # 2	seed: aaacaa	15 assembled patterns	length 20
;             alignt	             rev_cpl	score
gagcaa..............	..............ttgctc	1.40
.agcaag.............	.............cttgct.	16.82
..gcaagc............	............gcttgc..	15.86
...caagca...........	...........tgcttg...	5.09
....aagcaa..........	..........ttgctt....	13.02
.....agcaaa.........	.........tttgct.....	12.69
......gcaaac........	........gtttgc......	5.76
.......caaaca.......	.......tgtttg.......	12.23
........aaacaa......	......ttgttt........	20.13
.........aacaaa.....	.....tttgtt.........	13.51
..........acaaaa....	....ttttgt..........	5.86
...........caaaaa...	...tttttg...........	24.02
............aaaaaa..	..tttttt............	8.86
.............aaaaag.	.cttttt.............	1.28
..............aaaaga	tctttt..............	0.86
gagcaagcaaacaaaaaaga	tcttttttgtttgcttgctc	24.02	best consensus

; assembly # 3	seed: cattca	4 assembled patterns	length 9
;  alignt	  rev_cpl	score
ttcatt...	...aatgaa	2.27
.tcattc..	..gaatga.	7.76
..cattca.	.tgaatg..	13.81
...attcac	gtgaat...	1.76
ttcattcac	gtgaatgaa	13.81	best consensus

; assembly # 4	seed: aatcaa	11 assembled patterns	length 16
;         alignt	         rev_cpl	score
aaatca..........	..........tgattt	9.01
.aatcaa.........	.........ttgatt.	9.80
..atcaaa........	........tttgat..	5.96
...tcaaaa.......	.......ttttga...	4.14
....caaaaa......	......tttttg....	24.02
.....aaaaaa.....	.....tttttt.....	8.86
......aaaaag....	....cttttt......	1.28
.......aaaaga...	...tctttt.......	0.86
........aaagaa..	..ttcttt........	6.49
.........aagaaa.	.tttctt.........	9.35
..........agaaag	ctttct..........	3.29
aaatcaaaaaagaaag	ctttcttttttgattt	24.02	best consensus

; assembly # 5	seed: agctaa	7 assembled patterns	length 12
;     alignt	     rev_cpl	score
acttag......	......ctaagt	2.92
.cttagc.....	.....gctaag.	5.48
..ttagct....	....agctaa..	8.71
...tagcta...	...tagcta...	2.34
....agctaa..	..ttagct....	8.71
.....gctaag.	.cttagc.....	5.48
......ctaagt	acttag......	2.92
acttagctaagt	acttagctaagt	8.71	best consensus
; Maximal number of assemblies is reached (5). Remaining patterns: 68.
; Host name	rsat
; Job started	2026-05-18.122333
; Job done	2026-05-18.122338
; Seconds	4.94
;	user	4.94
;	system	0.01
;	cuser	0
;	csystem	0
