; matrix-scan  -quick -v 1 -seq_format fasta -i $RSAT/public_html/tmp/www-data/2026/05/18/peak-motifs.2026-05-18.122309_2026-05-18.122309_s78tRo/data/sequences/peak-motifs_test_maxlen2000.fasta -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2026/05/18/peak-motifs.2026-05-18.122309_2026-05-18.122309_s78tRo/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m5/peak-motifs_oligos_6nt_test_vs_ctrl_m5.tf -bg_format inclusive -bgfile $RSAT/public_html/tmp/www-data/2026/05/18/peak-motifs.2026-05-18.122309_2026-05-18.122309_s78tRo/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt -pseudo 1 -2str -decimals 1 -bg_pseudo 0.01 -n score -lth score 7.5 -origin center -offset 0 -return sites -o $RSAT/public_html/tmp/www-data/2026/05/18/peak-motifs.2026-05-18.122309_2026-05-18.122309_s78tRo/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m5/peak-motifs_oligos_6nt_test_vs_ctrl_m5_sites.tab
; Quick counting mode           
; Input files
;	bg	/var/www/html/rsat/public_html/tmp/www-data/2026/05/18/peak-motifs.2026-05-18.122309_2026-05-18.122309_s78tRo/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt
;	input	/var/www/html/rsat/public_html/tmp/www-data/2026/05/18/peak-motifs.2026-05-18.122309_2026-05-18.122309_s78tRo/data/sequences/peak-motifs_test_maxlen2000.fasta
; Matrix files
;	matrix 1	/var/www/html/rsat/public_html/tmp/www-data/2026/05/18/peak-motifs.2026-05-18.122309_2026-05-18.122309_s78tRo/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m5/peak-motifs_oligos_6nt_test_vs_ctrl_m5.tf
; Sequence format      	fasta
; Output files
;	output	/var/www/html/rsat/public_html/tmp/www-data/2026/05/18/peak-motifs.2026-05-18.122309_2026-05-18.122309_s78tRo/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m5/peak-motifs_oligos_6nt_test_vs_ctrl_m5_sites.tab
; Pseudo counts        	1
; Background model
;	Method        	file
;	Markov order  	1
;	Strand        	undef
;	Background pseudo-frequency	0.01
;	Residue probabilities
;		a	0.37607
;		c	0.12065
;		g	0.11927
;		t	0.38402
; Thresholds	lower	upper
;	score 	7.5  	NA
; Output columns
;	1	seq_id
;	2	ft_type
;	3	ft_name
;	4	strand
;	5	start
;	6	end
;	7	sequence
;	8	weight
#seq_id	ft_type	ft_name	strand	start	end	sequence	weight
chr_005_3_43732_47750	site	oligos_6nt_test_vs_ctrl_m5	D	-97	-82	AATATTAGCTAAGCAA	8.5
chr_005_3_43732_47750	site	oligos_6nt_test_vs_ctrl_m5	R	-97	-82	TTGCTTAGCTAATATT	8.5
chr_099_20_1396015_1400925	site	oligos_6nt_test_vs_ctrl_m5	D	514	529	TTACTAAGCTAATCTT	8.0
chr_099_20_1396015_1400925	site	oligos_6nt_test_vs_ctrl_m5	R	514	529	AAGATTAGCTTAGTAA	7.8
chr_128_21_482212_486134	site	oligos_6nt_test_vs_ctrl_m5	D	99	114	GAAGTTAGCTAGGTGT	7.7
chr_128_21_482212_486134	site	oligos_6nt_test_vs_ctrl_m5	R	99	114	ACACCTAGCTAACTTC	7.8
chr_135_22_1759154_1761371	site	oligos_6nt_test_vs_ctrl_m5	D	735	750	TACATAAGCTAAGTAG	8.3
chr_135_22_1759154_1761371	site	oligos_6nt_test_vs_ctrl_m5	R	735	750	CTACTTAGCTTATGTA	8.2
chr_138_35_498146_500565	site	oligos_6nt_test_vs_ctrl_m5	D	704	719	TGAGTTTGCTAAGTAG	7.7
chr_138_35_498146_500565	site	oligos_6nt_test_vs_ctrl_m5	R	704	719	CTACTTAGCAAACTCA	8.0
chr_036_38_33764_37006	site	oligos_6nt_test_vs_ctrl_m5	R	-980	-965	ATACTTAGAAAAGTTG	7.6
chr_143_39_263548_266727	site	oligos_6nt_test_vs_ctrl_m5	D	193	208	ACCCTTAGCTTAGCTG	8.6
chr_143_39_263548_266727	site	oligos_6nt_test_vs_ctrl_m5	R	193	208	CAGCTAAGCTAAGGGT	8.8
chr_176_46_514135_518565	site	oligos_6nt_test_vs_ctrl_m5	D	386	401	CTACTTGGCAAAGTGT	8.1
chr_176_46_514135_518565	site	oligos_6nt_test_vs_ctrl_m5	R	386	401	ACACTTTGCCAAGTAG	7.9
chr_180_49_371536_374299	site	oligos_6nt_test_vs_ctrl_m5	D	-771	-756	TTACTTATCTTAGTTA	8.2
chr_180_49_371536_374299	site	oligos_6nt_test_vs_ctrl_m5	R	-771	-756	TAACTAAGATAAGTAA	8.3
chr_180_49_371536_374299	site	oligos_6nt_test_vs_ctrl_m5	D	-755	-740	TAGCTTTGCTAAGAAT	7.9
chr_180_49_371536_374299	site	oligos_6nt_test_vs_ctrl_m5	R	-755	-740	ATTCTTAGCAAAGCTA	8.1
chr_177_52_400741_409906	site	oligos_6nt_test_vs_ctrl_m5	D	221	236	ATGCTTAGCTAATGTT	8.6
chr_177_52_400741_409906	site	oligos_6nt_test_vs_ctrl_m5	R	221	236	AACATTAGCTAAGCAT	8.6
chr_013_53_222372_225865	site	oligos_6nt_test_vs_ctrl_m5	D	-162	-147	GAGCTTTGCTAAGTGA	8.5
chr_013_53_222372_225865	site	oligos_6nt_test_vs_ctrl_m5	R	-162	-147	TCACTTAGCAAAGCTC	8.7
chr_013_53_222372_225865	site	oligos_6nt_test_vs_ctrl_m5	D	-20	-5	ATTCTTAGCTAATATA	8.6
chr_013_53_222372_225865	site	oligos_6nt_test_vs_ctrl_m5	R	-20	-5	TATATTAGCTAAGAAT	8.6
chr_001_54_1324107_1330291	site	oligos_6nt_test_vs_ctrl_m5	D	481	496	AATCTTAGCTAAGAAA	10.0
chr_001_54_1324107_1330291	site	oligos_6nt_test_vs_ctrl_m5	R	481	496	TTTCTTAGCTAAGATT	10.0
chr_015_56_547719_549951	site	oligos_6nt_test_vs_ctrl_m5	D	-919	-904	CCTCTTAGCAAAGGTT	7.6
chr_015_56_547719_549951	site	oligos_6nt_test_vs_ctrl_m5	R	-919	-904	AACCTTTGCTAAGAGG	7.6
chr_015_57_550677_554742	site	oligos_6nt_test_vs_ctrl_m5	D	251	266	TAAATTAGCTAAATTG	7.5
chr_015_57_550677_554742	site	oligos_6nt_test_vs_ctrl_m5	R	251	266	CAATTTAGCTAATTTA	7.5
chr_032_59_509852_511755	site	oligos_6nt_test_vs_ctrl_m5	D	-152	-137	TAGCTTAGCTAAAATA	8.1
chr_032_59_509852_511755	site	oligos_6nt_test_vs_ctrl_m5	R	-152	-137	TATTTTAGCTAAGCTA	8.1
chr_180_63_1750877_1753140	site	oligos_6nt_test_vs_ctrl_m5	D	356	371	ATAATTAGCTAACTAA	8.1
chr_180_63_1750877_1753140	site	oligos_6nt_test_vs_ctrl_m5	R	356	371	TTAGTTAGCTAATTAT	8.0
chr_116_66_874344_878624	site	oligos_6nt_test_vs_ctrl_m5	D	508	523	GCACTTAGCAAAGCCA	8.3
chr_116_66_874344_878624	site	oligos_6nt_test_vs_ctrl_m5	R	508	523	TGGCTTTGCTAAGTGC	8.0
chr_120_69_910287_914297	site	oligos_6nt_test_vs_ctrl_m5	D	-684	-669	AATATAAGCTAAGTTA	7.6
chr_120_69_910287_914297	site	oligos_6nt_test_vs_ctrl_m5	R	-684	-669	TAACTTAGCTTATATT	7.7
chr_116_71_854213_858567	site	oligos_6nt_test_vs_ctrl_m5	D	-996	-981	TTTATTAGCTAAGCTA	8.5
chr_116_71_854213_858567	site	oligos_6nt_test_vs_ctrl_m5	R	-996	-981	TAGCTTAGCTAATAAA	8.5
chr_138_77_1572444_1575071	site	oligos_6nt_test_vs_ctrl_m5	D	-63	-48	TAGCTTAGCTAAGCTA	11.1
chr_138_77_1572444_1575071	site	oligos_6nt_test_vs_ctrl_m5	R	-63	-48	TAGCTTAGCTAAGCTA	11.1
chr_138_77_1572444_1575071	site	oligos_6nt_test_vs_ctrl_m5	D	-58	-43	TAGCTAAGCTAAGTAG	10.4
chr_138_77_1572444_1575071	site	oligos_6nt_test_vs_ctrl_m5	R	-58	-43	CTACTTAGCTTAGCTA	10.3
chr_138_77_1572444_1575071	site	oligos_6nt_test_vs_ctrl_m5	D	181	196	CTACTTAGCTTAACTC	7.7
chr_138_77_1572444_1575071	site	oligos_6nt_test_vs_ctrl_m5	R	181	196	GAGTTAAGCTAAGTAG	7.7
chr_138_77_1572444_1575071	site	oligos_6nt_test_vs_ctrl_m5	D	191	206	TAACTCAGCTAAGAAG	8.8
chr_138_77_1572444_1575071	site	oligos_6nt_test_vs_ctrl_m5	R	191	206	CTTCTTAGCTGAGTTA	8.6
chr_112_84_516936_520211	site	oligos_6nt_test_vs_ctrl_m5	D	-874	-859	AGTGTTAGCTAAGGAG	8.2
chr_112_84_516936_520211	site	oligos_6nt_test_vs_ctrl_m5	R	-874	-859	CTCCTTAGCTAACACT	8.2
chr_112_84_516936_520211	site	oligos_6nt_test_vs_ctrl_m5	D	-826	-811	TAATTTAGCTAAGCTT	8.7
chr_112_84_516936_520211	site	oligos_6nt_test_vs_ctrl_m5	R	-826	-811	AAGCTTAGCTAAATTA	8.7
chr_112_84_516936_520211	site	oligos_6nt_test_vs_ctrl_m5	D	-821	-806	TAGCTAAGCTTAGTAA	8.0
chr_112_84_516936_520211	site	oligos_6nt_test_vs_ctrl_m5	R	-821	-806	TTACTAAGCTTAGCTA	8.1
chr_128_88_193411_198202	site	oligos_6nt_test_vs_ctrl_m5	D	-262	-247	AAGCTAAGCTAAGCGA	9.1
chr_128_88_193411_198202	site	oligos_6nt_test_vs_ctrl_m5	R	-262	-247	TCGCTTAGCTTAGCTT	9.0
chr_135_90_1015439_1018041	site	oligos_6nt_test_vs_ctrl_m5	D	-275	-260	TTTTTTAGCTAAGCTA	7.5
chr_135_90_1015439_1018041	site	oligos_6nt_test_vs_ctrl_m5	R	-275	-260	TAGCTTAGCTAAAAAA	7.5
chr_158_94_204326_210565	site	oligos_6nt_test_vs_ctrl_m5	D	-670	-655	CTAATTAGCTAATTCT	7.8
chr_158_94_204326_210565	site	oligos_6nt_test_vs_ctrl_m5	R	-670	-655	AGAATTAGCTAATTAG	7.8
chr_129_98_132046_138124	site	oligos_6nt_test_vs_ctrl_m5	D	-653	-638	AGACTTAGCGAAGACC	9.3
chr_129_98_132046_138124	site	oligos_6nt_test_vs_ctrl_m5	R	-653	-638	GGTCTTCGCTAAGTCT	9.2
chr_116_100_532654_540624	site	oligos_6nt_test_vs_ctrl_m5	D	64	79	ATAATTAGCCAAGTTT	7.6
chr_116_100_532654_540624	site	oligos_6nt_test_vs_ctrl_m5	R	64	79	AAACTTGGCTAATTAT	7.7
chr_152_102_27263_31563	site	oligos_6nt_test_vs_ctrl_m5	D	-489	-474	ATTATTAGCTTAGTTA	7.5
chr_152_102_27263_31563	site	oligos_6nt_test_vs_ctrl_m5	R	-489	-474	TAACTAAGCTAATAAT	7.7
chr_161_119_115063_115973	site	oligos_6nt_test_vs_ctrl_m5	D	38	53	TAACTAAGCTAATAAA	7.6
chr_010_120_76788_80845	site	oligos_6nt_test_vs_ctrl_m5	D	384	399	AAAATTAGCTAAGAAA	8.5
chr_010_120_76788_80845	site	oligos_6nt_test_vs_ctrl_m5	R	384	399	TTTCTTAGCTAATTTT	8.5
chr_148_121_360072_362957	site	oligos_6nt_test_vs_ctrl_m5	D	-193	-178	AATCTTAGCTAAGAAT	10.2
chr_148_121_360072_362957	site	oligos_6nt_test_vs_ctrl_m5	R	-193	-178	ATTCTTAGCTAAGATT	10.2
chr_175_126_122350_129034	site	oligos_6nt_test_vs_ctrl_m5	D	-781	-766	ACCCTTAGCTAATACT	8.3
chr_175_126_122350_129034	site	oligos_6nt_test_vs_ctrl_m5	R	-781	-766	AGTATTAGCTAAGGGT	8.3
chr_105_131_381450_383501	site	oligos_6nt_test_vs_ctrl_m5	D	601	616	TAAATTAGCTAATTAT	8.1
chr_105_131_381450_383501	site	oligos_6nt_test_vs_ctrl_m5	R	601	616	ATAATTAGCTAATTTA	8.1
chr_009_138_79812_84348	site	oligos_6nt_test_vs_ctrl_m5	R	-56	-41	ATACTTAGATAATATG	7.6
chr_114_142_1157062_1159048	site	oligos_6nt_test_vs_ctrl_m5	D	-423	-408	TAGCTTAGCTAAATTT	8.7
chr_114_142_1157062_1159048	site	oligos_6nt_test_vs_ctrl_m5	R	-423	-408	AAATTTAGCTAAGCTA	8.7
chr_004_148_488379_497807	site	oligos_6nt_test_vs_ctrl_m5	D	39	54	AATCTTAGCTAATCAT	8.9
chr_004_148_488379_497807	site	oligos_6nt_test_vs_ctrl_m5	R	39	54	ATGATTAGCTAAGATT	8.8
chr_004_148_488379_497807	site	oligos_6nt_test_vs_ctrl_m5	D	68	83	GAGTTTAGCTAAGTTT	9.0
chr_004_148_488379_497807	site	oligos_6nt_test_vs_ctrl_m5	R	68	83	AAACTTAGCTAAACTC	9.1
chr_004_148_488379_497807	site	oligos_6nt_test_vs_ctrl_m5	D	547	562	GTGGTTAGCTAAGTTG	10.1
chr_004_148_488379_497807	site	oligos_6nt_test_vs_ctrl_m5	R	547	562	CAACTTAGCTAACCAC	10.2
chr_105_164_1092817_1094850	site	oligos_6nt_test_vs_ctrl_m5	D	223	238	TAACTAAGCTAAGCTG	10.2
chr_105_164_1092817_1094850	site	oligos_6nt_test_vs_ctrl_m5	R	223	238	CAGCTTAGCTTAGTTA	10.1
chr_073_167_171140_173673	site	oligos_6nt_test_vs_ctrl_m5	D	-130	-115	CCACTTAGCTAAGCTA	12.1
chr_073_167_171140_173673	site	oligos_6nt_test_vs_ctrl_m5	R	-130	-115	TAGCTTAGCTAAGTGG	12.1
chr_008_169_141443_144783	site	oligos_6nt_test_vs_ctrl_m5	D	-742	-727	GTACTTAGATTAGTAA	8.3
chr_008_169_141443_144783	site	oligos_6nt_test_vs_ctrl_m5	R	-742	-727	TTACTAATCTAAGTAC	8.4
chr_008_169_141443_144783	site	oligos_6nt_test_vs_ctrl_m5	D	-647	-632	TAGCTTATCTAAGTCA	9.1
chr_008_169_141443_144783	site	oligos_6nt_test_vs_ctrl_m5	R	-647	-632	TGACTTAGATAAGCTA	9.2
chr_174_171_1410691_1411473	site	oligos_6nt_test_vs_ctrl_m5	D	-85	-70	TATCTTAGCCAAGTAA	9.4
chr_174_171_1410691_1411473	site	oligos_6nt_test_vs_ctrl_m5	R	-85	-70	TTACTTGGCTAAGATA	9.5
chr_057_175_1643829_1646292	site	oligos_6nt_test_vs_ctrl_m5	D	733	748	TGCCTAAGCTAAGCTA	8.2
chr_057_175_1643829_1646292	site	oligos_6nt_test_vs_ctrl_m5	R	733	748	TAGCTTAGCTTAGGCA	8.1
chr_054_185_693700_694742	site	oligos_6nt_test_vs_ctrl_m5	R	302	317	ACACCTAGCTAATAGT	7.6
chr_119_188_436079_439855	site	oligos_6nt_test_vs_ctrl_m5	D	-642	-627	TGACTTAGTTAAGAGA	8.1
chr_119_188_436079_439855	site	oligos_6nt_test_vs_ctrl_m5	R	-642	-627	TCTCTTAACTAAGTCA	8.0
chr_119_188_436079_439855	site	oligos_6nt_test_vs_ctrl_m5	D	-498	-483	CTTCTTGGCTAAGTTA	9.0
chr_119_188_436079_439855	site	oligos_6nt_test_vs_ctrl_m5	R	-498	-483	TAACTTAGCCAAGAAG	9.2
chr_180_196_343122_347692	site	oligos_6nt_test_vs_ctrl_m5	D	64	79	TTTCCTAGCTAAGCTT	8.0
chr_180_196_343122_347692	site	oligos_6nt_test_vs_ctrl_m5	R	64	79	AAGCTTAGCTAGGAAA	8.0
chr_122_200_48343_49945	site	oligos_6nt_test_vs_ctrl_m5	D	733	748	TTACTTAGCTATTCTG	7.6
chr_032_203_918593_921422	site	oligos_6nt_test_vs_ctrl_m5	D	-58	-43	AAACTTAGCTAAGACC	11.1
chr_032_203_918593_921422	site	oligos_6nt_test_vs_ctrl_m5	R	-58	-43	GGTCTTAGCTAAGTTT	11.1
;
; Matrices
;	matrix	name                      	ncol	nrow	pseudo	Wmin	Wmax	Wrange
;	1	oligos_6nt_test_vs_ctrl_m5	16	4	0	-21.300	13.800	35.100	a:0.376 c:0.121 g:0.119 t:0.384 
; Number of sequences scanned	203
; Sum of sequence lengths	370583
; N residues           	0
; Matches per matrix
;	matrix	name                      	matches	scored
;	1	oligos_6nt_test_vs_ctrl_m5	107	0
;		TOTAL          	107	0
; Host name	rsat
; Job started	2026-05-18.122409
; Job done	2026-05-18.122409
; Seconds	0.25
;	user	0.25
;	system	0.02
;	cuser	0.1
;	csystem	0.01
