; compare-matrices  -v 1 -format transfac -file $RSAT/public_html/tmp/www-data/2026/05/18/peak-motifs.2026-05-18.122309_2026-05-18.122309_s78tRo/results/discovered_motifs/peak-motifs_motifs_discovered.tf -distinct -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/05/18/peak-motifs.2026-05-18.122309_2026-05-18.122309_s78tRo/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab
; Program version       	1.118
; Quick mode 
; Input files
;	file2 	/var/www/html/rsat/public_html/tmp/www-data/2026/05/18/peak-motifs.2026-05-18.122309_2026-05-18.122309_s78tRo/results/discovered_motifs/peak-motifs_motifs_discovered.tf
;	file1 	/var/www/html/rsat/public_html/tmp/www-data/2026/05/18/peak-motifs.2026-05-18.122309_2026-05-18.122309_s78tRo/results/discovered_motifs/peak-motifs_motifs_discovered.tf
; Output files
;	match_table_txt	/var/www/html/rsat/public_html/tmp/www-data/2026/05/18/peak-motifs.2026-05-18.122309_2026-05-18.122309_s78tRo/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab
;	alignments_1ton	/var/www/html/rsat/public_html/tmp/www-data/2026/05/18/peak-motifs.2026-05-18.122309_2026-05-18.122309_s78tRo/results/discovered_motifs/peak-motifs_motifs_disco_compa_alignments_1ton.tab
;	prefix       	/var/www/html/rsat/public_html/tmp/www-data/2026/05/18/peak-motifs.2026-05-18.122309_2026-05-18.122309_s78tRo/results/discovered_motifs/peak-motifs_motifs_disco_compa
;	alignments_1ton_html	/var/www/html/rsat/public_html/tmp/www-data/2026/05/18/peak-motifs.2026-05-18.122309_2026-05-18.122309_s78tRo/results/discovered_motifs/peak-motifs_motifs_disco_compa_alignments_1ton.html
;	match_table_html	/var/www/html/rsat/public_html/tmp/www-data/2026/05/18/peak-motifs.2026-05-18.122309_2026-05-18.122309_s78tRo/results/discovered_motifs/peak-motifs_motifs_disco_compa.html
;	html_index   	/var/www/html/rsat/public_html/tmp/www-data/2026/05/18/peak-motifs.2026-05-18.122309_2026-05-18.122309_s78tRo/results/discovered_motifs/peak-motifs_motifs_disco_compa_index.html
; Matrices
;	file1	10 matrices	/var/www/html/rsat/public_html/tmp/www-data/2026/05/18/peak-motifs.2026-05-18.122309_2026-05-18.122309_s78tRo/results/discovered_motifs/peak-motifs_motifs_discovered.tf
;		file1	1	23	208
;		file1	2	24	245
;		file1	3	13	609
;		file1	4	20	400
;		file1	5	16	226
;		file1	6	24	259
;		file1	7	13	681
;		file1	8	21	210
;		file1	9	19	284
;		file1	10	19	156
;	file2	10 matrices	/var/www/html/rsat/public_html/tmp/www-data/2026/05/18/peak-motifs.2026-05-18.122309_2026-05-18.122309_s78tRo/results/discovered_motifs/peak-motifs_motifs_discovered.tf
;		file2		1		23		208
;		file2		2		24		245
;		file2		3		13		609
;		file2		4		20		400
;		file2		5		16		226
;		file2		6		24		259
;		file2		7		13		681
;		file2		8		21		210
;		file2		9		19		284
;		file2		10		19		156
; Column content
;	1	id1          	Identifier of the first matrix
;	2	id2          	Identifier of the second matrix
;	3	name1        	Name of the first matrix
;	4	name2        	Name of the second matrix
;	5	cor          	Pearson coefficient of correlation between frequency matrices
;	6	Ncor         	Normalized correlation. Ncor = cor * Wr
;	7	w1           	Width of the first matrix
;	8	w2           	Width of the second matrix
;	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
;	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
;	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
;	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
;	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
;	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
;	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
#id1	id2	name1	name2	cor	Ncor	w1	w2	w	W	Wr	wr1	wr2	strand	offset
oligos_6nt_test_vs_ctrl_m2	oligos_6nt_test_vs_ctrl_m2	oligos_6nt_test_vs_ctrl_m2	oligos_6nt_test_vs_ctrl_m2	1.000	1.000	24	24	24	24	1.0000	1.0000	1.0000	D	0
oligos_6nt_test_vs_ctrl_m1	oligos_6nt_test_vs_ctrl_m1	oligos_6nt_test_vs_ctrl_m1	oligos_6nt_test_vs_ctrl_m1	1.000	1.000	23	23	23	23	1.0000	1.0000	1.0000	D	0
oligos_6nt_test_vs_ctrl_m3	oligos_6nt_test_vs_ctrl_m3	oligos_6nt_test_vs_ctrl_m3	oligos_6nt_test_vs_ctrl_m3	1.000	1.000	13	13	13	13	1.0000	1.0000	1.0000	D	0
oligos_7nt_test_vs_ctrl_m2	oligos_7nt_test_vs_ctrl_m2	oligos_7nt_test_vs_ctrl_m2	oligos_7nt_test_vs_ctrl_m2	1.000	1.000	13	13	13	13	1.0000	1.0000	1.0000	D	0
oligos_7nt_test_vs_ctrl_m3	oligos_7nt_test_vs_ctrl_m3	oligos_7nt_test_vs_ctrl_m3	oligos_7nt_test_vs_ctrl_m3	1.000	1.000	21	21	21	21	1.0000	1.0000	1.0000	D	0
oligos_6nt_test_vs_ctrl_m5	oligos_6nt_test_vs_ctrl_m5	oligos_6nt_test_vs_ctrl_m5	oligos_6nt_test_vs_ctrl_m5	1.000	1.000	16	16	16	16	1.0000	1.0000	1.0000	D	0
oligos_7nt_test_vs_ctrl_m1	oligos_7nt_test_vs_ctrl_m1	oligos_7nt_test_vs_ctrl_m1	oligos_7nt_test_vs_ctrl_m1	1.000	1.000	24	24	24	24	1.0000	1.0000	1.0000	D	0
oligos_7nt_test_vs_ctrl_m4	oligos_7nt_test_vs_ctrl_m4	oligos_7nt_test_vs_ctrl_m4	oligos_7nt_test_vs_ctrl_m4	1.000	1.000	19	19	19	19	1.0000	1.0000	1.0000	D	0
oligos_7nt_test_vs_ctrl_m5	oligos_7nt_test_vs_ctrl_m5	oligos_7nt_test_vs_ctrl_m5	oligos_7nt_test_vs_ctrl_m5	1.000	1.000	19	19	19	19	1.0000	1.0000	1.0000	D	0
oligos_6nt_test_vs_ctrl_m4	oligos_6nt_test_vs_ctrl_m4	oligos_6nt_test_vs_ctrl_m4	oligos_6nt_test_vs_ctrl_m4	1.000	1.000	20	20	20	20	1.0000	1.0000	1.0000	D	0
oligos_6nt_test_vs_ctrl_m3	oligos_7nt_test_vs_ctrl_m2	oligos_6nt_test_vs_ctrl_m3	oligos_7nt_test_vs_ctrl_m2	0.952	0.952	13	13	13	13	1.0000	1.0000	1.0000	R	0
oligos_7nt_test_vs_ctrl_m2	oligos_6nt_test_vs_ctrl_m3	oligos_7nt_test_vs_ctrl_m2	oligos_6nt_test_vs_ctrl_m3	0.952	0.952	13	13	13	13	1.0000	1.0000	1.0000	R	0
oligos_7nt_test_vs_ctrl_m1	oligos_6nt_test_vs_ctrl_m2	oligos_7nt_test_vs_ctrl_m1	oligos_6nt_test_vs_ctrl_m2	0.988	0.909	24	24	23	25	0.9200	0.9583	0.9583	D	1
oligos_6nt_test_vs_ctrl_m2	oligos_7nt_test_vs_ctrl_m1	oligos_6nt_test_vs_ctrl_m2	oligos_7nt_test_vs_ctrl_m1	0.988	0.909	24	24	23	25	0.9200	0.9583	0.9583	D	-1
oligos_6nt_test_vs_ctrl_m2	oligos_6nt_test_vs_ctrl_m1	oligos_6nt_test_vs_ctrl_m2	oligos_6nt_test_vs_ctrl_m1	0.907	0.869	24	23	23	24	0.9583	0.9583	1.0000	D	0
oligos_6nt_test_vs_ctrl_m1	oligos_6nt_test_vs_ctrl_m2	oligos_6nt_test_vs_ctrl_m1	oligos_6nt_test_vs_ctrl_m2	0.907	0.869	23	24	23	24	0.9583	1.0000	0.9583	D	0
oligos_6nt_test_vs_ctrl_m1	oligos_7nt_test_vs_ctrl_m1	oligos_6nt_test_vs_ctrl_m1	oligos_7nt_test_vs_ctrl_m1	0.879	0.843	23	24	23	24	0.9583	1.0000	0.9583	D	-1
oligos_7nt_test_vs_ctrl_m1	oligos_6nt_test_vs_ctrl_m1	oligos_7nt_test_vs_ctrl_m1	oligos_6nt_test_vs_ctrl_m1	0.879	0.843	24	23	23	24	0.9583	0.9583	1.0000	D	1
oligos_7nt_test_vs_ctrl_m3	oligos_7nt_test_vs_ctrl_m1	oligos_7nt_test_vs_ctrl_m3	oligos_7nt_test_vs_ctrl_m1	0.919	0.804	21	24	21	24	0.8750	1.0000	0.8750	D	0
oligos_7nt_test_vs_ctrl_m1	oligos_7nt_test_vs_ctrl_m3	oligos_7nt_test_vs_ctrl_m1	oligos_7nt_test_vs_ctrl_m3	0.919	0.804	24	21	21	24	0.8750	0.8750	1.0000	D	0
oligos_6nt_test_vs_ctrl_m2	oligos_7nt_test_vs_ctrl_m3	oligos_6nt_test_vs_ctrl_m2	oligos_7nt_test_vs_ctrl_m3	0.877	0.767	24	21	21	24	0.8750	0.8750	1.0000	D	3
oligos_7nt_test_vs_ctrl_m3	oligos_6nt_test_vs_ctrl_m2	oligos_7nt_test_vs_ctrl_m3	oligos_6nt_test_vs_ctrl_m2	0.877	0.767	21	24	21	24	0.8750	1.0000	0.8750	D	-3
oligos_6nt_test_vs_ctrl_m1	oligos_7nt_test_vs_ctrl_m3	oligos_6nt_test_vs_ctrl_m1	oligos_7nt_test_vs_ctrl_m3	0.920	0.767	23	21	20	24	0.8333	0.8696	0.9524	D	-1
oligos_7nt_test_vs_ctrl_m3	oligos_6nt_test_vs_ctrl_m1	oligos_7nt_test_vs_ctrl_m3	oligos_6nt_test_vs_ctrl_m1	0.920	0.767	21	23	20	24	0.8333	0.9524	0.8696	D	1
oligos_7nt_test_vs_ctrl_m4	oligos_7nt_test_vs_ctrl_m3	oligos_7nt_test_vs_ctrl_m4	oligos_7nt_test_vs_ctrl_m3	0.808	0.731	19	21	19	21	0.9048	1.0000	0.9048	D	-2
oligos_7nt_test_vs_ctrl_m3	oligos_7nt_test_vs_ctrl_m4	oligos_7nt_test_vs_ctrl_m3	oligos_7nt_test_vs_ctrl_m4	0.808	0.731	21	19	19	21	0.9048	0.9048	1.0000	D	2
oligos_6nt_test_vs_ctrl_m4	oligos_6nt_test_vs_ctrl_m1	oligos_6nt_test_vs_ctrl_m4	oligos_6nt_test_vs_ctrl_m1	0.815	0.709	20	23	20	23	0.8696	1.0000	0.8696	D	-3
oligos_6nt_test_vs_ctrl_m1	oligos_6nt_test_vs_ctrl_m4	oligos_6nt_test_vs_ctrl_m1	oligos_6nt_test_vs_ctrl_m4	0.815	0.709	23	20	20	23	0.8696	0.8696	1.0000	D	3
oligos_6nt_test_vs_ctrl_m4	oligos_7nt_test_vs_ctrl_m3	oligos_6nt_test_vs_ctrl_m4	oligos_7nt_test_vs_ctrl_m3	0.728	0.693	20	21	20	21	0.9524	1.0000	0.9524	D	0
oligos_7nt_test_vs_ctrl_m3	oligos_6nt_test_vs_ctrl_m4	oligos_7nt_test_vs_ctrl_m3	oligos_6nt_test_vs_ctrl_m4	0.728	0.693	21	20	20	21	0.9524	0.9524	1.0000	D	0
oligos_7nt_test_vs_ctrl_m5	oligos_6nt_test_vs_ctrl_m2	oligos_7nt_test_vs_ctrl_m5	oligos_6nt_test_vs_ctrl_m2	0.803	0.636	19	24	19	24	0.7917	1.0000	0.7917	D	-2
oligos_6nt_test_vs_ctrl_m2	oligos_7nt_test_vs_ctrl_m5	oligos_6nt_test_vs_ctrl_m2	oligos_7nt_test_vs_ctrl_m5	0.803	0.636	24	19	19	24	0.7917	0.7917	1.0000	D	2
oligos_7nt_test_vs_ctrl_m4	oligos_6nt_test_vs_ctrl_m4	oligos_7nt_test_vs_ctrl_m4	oligos_6nt_test_vs_ctrl_m4	0.811	0.627	19	20	17	22	0.7727	0.8947	0.8500	D	2
oligos_6nt_test_vs_ctrl_m4	oligos_7nt_test_vs_ctrl_m4	oligos_6nt_test_vs_ctrl_m4	oligos_7nt_test_vs_ctrl_m4	0.811	0.627	20	19	17	22	0.7727	0.8500	0.8947	D	-2
oligos_7nt_test_vs_ctrl_m1	oligos_7nt_test_vs_ctrl_m5	oligos_7nt_test_vs_ctrl_m1	oligos_7nt_test_vs_ctrl_m5	0.786	0.622	24	19	19	24	0.7917	0.7917	1.0000	D	3
oligos_7nt_test_vs_ctrl_m5	oligos_7nt_test_vs_ctrl_m1	oligos_7nt_test_vs_ctrl_m5	oligos_7nt_test_vs_ctrl_m1	0.786	0.622	19	24	19	24	0.7917	1.0000	0.7917	D	-3
oligos_7nt_test_vs_ctrl_m3	oligos_7nt_test_vs_ctrl_m5	oligos_7nt_test_vs_ctrl_m3	oligos_7nt_test_vs_ctrl_m5	0.755	0.617	21	19	18	22	0.8182	0.8571	0.9474	D	-1
oligos_7nt_test_vs_ctrl_m5	oligos_7nt_test_vs_ctrl_m3	oligos_7nt_test_vs_ctrl_m5	oligos_7nt_test_vs_ctrl_m3	0.755	0.617	19	21	18	22	0.8182	0.9474	0.8571	D	1
oligos_7nt_test_vs_ctrl_m4	oligos_6nt_test_vs_ctrl_m1	oligos_7nt_test_vs_ctrl_m4	oligos_6nt_test_vs_ctrl_m1	0.733	0.606	19	23	19	23	0.8261	1.0000	0.8261	D	-1
oligos_6nt_test_vs_ctrl_m1	oligos_7nt_test_vs_ctrl_m4	oligos_6nt_test_vs_ctrl_m1	oligos_7nt_test_vs_ctrl_m4	0.733	0.606	23	19	19	23	0.8261	0.8261	1.0000	D	1
oligos_7nt_test_vs_ctrl_m4	oligos_6nt_test_vs_ctrl_m2	oligos_7nt_test_vs_ctrl_m4	oligos_6nt_test_vs_ctrl_m2	0.760	0.602	19	24	19	24	0.7917	1.0000	0.7917	D	-5
oligos_6nt_test_vs_ctrl_m2	oligos_7nt_test_vs_ctrl_m4	oligos_6nt_test_vs_ctrl_m2	oligos_7nt_test_vs_ctrl_m4	0.760	0.602	24	19	19	24	0.7917	0.7917	1.0000	D	5
oligos_7nt_test_vs_ctrl_m5	oligos_6nt_test_vs_ctrl_m1	oligos_7nt_test_vs_ctrl_m5	oligos_6nt_test_vs_ctrl_m1	0.726	0.600	19	23	19	23	0.8261	1.0000	0.8261	D	-2
oligos_6nt_test_vs_ctrl_m1	oligos_7nt_test_vs_ctrl_m5	oligos_6nt_test_vs_ctrl_m1	oligos_7nt_test_vs_ctrl_m5	0.726	0.600	23	19	19	23	0.8261	0.8261	1.0000	D	2
oligos_6nt_test_vs_ctrl_m2	oligos_6nt_test_vs_ctrl_m4	oligos_6nt_test_vs_ctrl_m2	oligos_6nt_test_vs_ctrl_m4	0.716	0.596	24	20	20	24	0.8333	0.8333	1.0000	D	3
oligos_6nt_test_vs_ctrl_m4	oligos_6nt_test_vs_ctrl_m2	oligos_6nt_test_vs_ctrl_m4	oligos_6nt_test_vs_ctrl_m2	0.716	0.596	20	24	20	24	0.8333	1.0000	0.8333	D	-3
oligos_7nt_test_vs_ctrl_m4	oligos_7nt_test_vs_ctrl_m1	oligos_7nt_test_vs_ctrl_m4	oligos_7nt_test_vs_ctrl_m1	0.750	0.593	19	24	19	24	0.7917	1.0000	0.7917	D	-2
oligos_7nt_test_vs_ctrl_m1	oligos_7nt_test_vs_ctrl_m4	oligos_7nt_test_vs_ctrl_m1	oligos_7nt_test_vs_ctrl_m4	0.750	0.593	24	19	19	24	0.7917	0.7917	1.0000	D	2
oligos_7nt_test_vs_ctrl_m1	oligos_6nt_test_vs_ctrl_m4	oligos_7nt_test_vs_ctrl_m1	oligos_6nt_test_vs_ctrl_m4	0.707	0.589	24	20	20	24	0.8333	0.8333	1.0000	D	4
oligos_6nt_test_vs_ctrl_m4	oligos_7nt_test_vs_ctrl_m1	oligos_6nt_test_vs_ctrl_m4	oligos_7nt_test_vs_ctrl_m1	0.707	0.589	20	24	20	24	0.8333	1.0000	0.8333	D	-4
oligos_7nt_test_vs_ctrl_m4	oligos_7nt_test_vs_ctrl_m2	oligos_7nt_test_vs_ctrl_m4	oligos_7nt_test_vs_ctrl_m2	0.762	0.521	19	13	13	19	0.6842	0.6842	1.0000	R	0
oligos_7nt_test_vs_ctrl_m2	oligos_7nt_test_vs_ctrl_m4	oligos_7nt_test_vs_ctrl_m2	oligos_7nt_test_vs_ctrl_m4	0.762	0.521	13	19	13	19	0.6842	1.0000	0.6842	R	-6
; Host name	rsat
; Job started	2026-05-18.122353
; Job done	2026-05-18.122404
; Seconds	0.57
;	user	0.57
;	system	0.39
;	cuser	8.8
;	csystem	1.24
