position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2026/05/18/peak-motifs.2026-05-18.122309_2026-05-18.122309_s78tRo/data/sequences/peak-motifs_ctrl_maxlen2000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 1 -ci 20 -img_format png -title zf420_top20 -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2026/05/18/peak-motifs.2026-05-18.122309_2026-05-18.122309_s78tRo/results/composition/peak-motifs_ctrl_profiles-1str-ovlp_1nt_ci20.tab Citation: van Helden, et al. (2000). Nucleic Acids Res 28, 1000-1010. Sequence file $RSAT/public_html/tmp/www-data/2026/05/18/peak-motifs.2026-05-18.122309_2026-05-18.122309_s78tRo/data/sequences/peak-motifs_ctrl_maxlen2000_purged_ml40_mis3.fasta Sequence format fasta Sequence type dna Output file $RSAT/public_html/tmp/www-data/2026/05/18/peak-motifs.2026-05-18.122309_2026-05-18.122309_s78tRo/results/composition/peak-motifs_ctrl_profiles-1str-ovlp_1nt_ci20.tab Oligo length 1 Occurrences counted on a single strands Conditions of applicability checked. Background model estimation: homogeneous repartition Sequence statistics: Nb of sequences 203 Sum of sequence lengths 370583 Min sequence length 0 Max sequence length 2000 Average sequence length 1825 Possible positions 370583 Oligonucleotide statistics: Total occurrences 360107 Position interval parameters: Position interval 20 Number of windows 100 Total positions 370583 Degrees of freedom 99 K-mer clustering parameters: Number of clusters 0 Clustering method complete Position intervals: window [min,max] mid seq occ 1 -50 [-999,-980] -989.5 161 3196 2 -49 [-979,-960] -969.5 163 3234 3 -48 [-959,-940] -949.5 165 3274 4 -47 [-939,-920] -929.5 165 3300 5 -46 [-919,-900] -909.5 165 3300 6 -45 [-899,-880] -889.5 165 3300 7 -44 [-879,-860] -869.5 166 3314 8 -43 [-859,-840] -849.5 167 3327 9 -42 [-839,-820] -829.5 167 3340 10 -41 [-819,-800] -809.5 170 3358 11 -40 [-799,-780] -789.5 171 3414 12 -39 [-779,-760] -769.5 171 3420 13 -38 [-759,-740] -749.5 172 3436 14 -37 [-739,-720] -729.5 172 3440 15 -36 [-719,-700] -709.5 173 3441 16 -35 [-699,-680] -689.5 173 3460 17 -34 [-679,-660] -669.5 173 3460 18 -33 [-659,-640] -649.5 174 3474 19 -32 [-639,-620] -629.5 175 3498 20 -31 [-619,-600] -609.5 176 3504 21 -30 [-599,-580] -589.5 176 3520 22 -29 [-579,-560] -569.5 178 3542 23 -28 [-559,-540] -549.5 180 3564 24 -27 [-539,-520] -529.5 186 3684 25 -26 [-519,-500] -509.5 189 3762 26 -25 [-499,-480] -489.5 189 3780 27 -24 [-479,-460] -469.5 191 3806 28 -23 [-459,-440] -449.5 194 3870 29 -22 [-439,-420] -429.5 195 3896 30 -21 [-419,-400] -409.5 196 3903 31 -20 [-399,-380] -389.5 197 3932 32 -19 [-379,-360] -369.5 197 3940 33 -18 [-359,-340] -349.5 197 3940 34 -17 [-339,-320] -329.5 198 3949 35 -16 [-319,-300] -309.5 200 3993 36 -15 [-299,-280] -289.5 200 4000 37 -14 [-279,-260] -269.5 202 4026 38 -13 [-259,-240] -249.5 202 4040 39 -12 [-239,-220] -229.5 202 4040 40 -11 [-219,-200] -209.5 203 4047 41 -10 [-199,-180] -189.5 203 4060 42 -9 [-179,-160] -169.5 203 4060 43 -8 [-159,-140] -149.5 203 4060 44 -7 [-139,-120] -129.5 203 4060 45 -6 [-119,-100] -109.5 203 4060 46 -5 [-99,-80] -89.5 203 4060 47 -4 [-79,-60] -69.5 203 4060 48 -3 [-59,-40] -49.5 203 4060 49 -2 [-39,-20] -29.5 203 4060 50 -1 [-19,0] -9.5 203 4060 51 0 [1,20] 10.5 203 4060 52 1 [21,40] 30.5 203 4060 53 2 [41,60] 50.5 203 4060 54 3 [61,80] 70.5 203 4060 55 4 [81,100] 90.5 203 4060 56 5 [101,120] 110.5 203 4060 57 6 [121,140] 130.5 203 4060 58 7 [141,160] 150.5 203 4060 59 8 [161,180] 170.5 203 4060 60 9 [181,200] 190.5 203 4060 61 10 [201,220] 210.5 203 4046 62 11 [221,240] 230.5 202 4040 63 12 [241,260] 250.5 202 4040 64 13 [261,280] 270.5 202 4023 65 14 [281,300] 290.5 200 4000 66 15 [301,320] 310.5 200 3991 67 16 [321,340] 330.5 198 3948 68 17 [341,360] 350.5 197 3940 69 18 [361,380] 370.5 197 3940 70 19 [381,400] 390.5 197 3930 71 20 [401,420] 410.5 196 3902 72 21 [421,440] 430.5 195 3895 73 22 [441,460] 450.5 194 3864 74 23 [461,480] 470.5 191 3803 75 24 [481,500] 490.5 189 3780 76 25 [501,520] 510.5 189 3757 77 26 [521,540] 530.5 185 3674 78 27 [541,560] 550.5 179 3561 79 28 [561,580] 570.5 178 3542 80 29 [581,600] 590.5 176 3520 81 30 [601,620] 610.5 176 3502 82 31 [621,640] 630.5 175 3498 83 32 [641,660] 650.5 174 3472 84 33 [661,680] 670.5 173 3460 85 34 [681,700] 690.5 173 3460 86 35 [701,720] 710.5 172 3440 87 36 [721,740] 730.5 172 3440 88 37 [741,760] 750.5 172 3435 89 38 [761,780] 770.5 171 3420 90 39 [781,800] 790.5 171 3413 91 40 [801,820] 810.5 168 3352 92 41 [821,840] 830.5 167 3340 93 42 [841,860] 850.5 167 3326 94 43 [861,880] 870.5 166 3312 95 44 [881,900] 890.5 165 3300 96 45 [901,920] 910.5 165 3300 97 46 [921,940] 930.5 165 3300 98 47 [941,960] 950.5 164 3271 99 48 [961,980] 970.5 163 3232 100 49 [981,1000] 990.5 161 3190 Column headers 1 seq pattern sequence 2 id pattern identifier 3 occ pattern occurrences 4 chi2 observed chi-square 5 df degrees of freedom 6 Pval P-value (probability for one word to be a false positive) 7 Eval E-value; expected number of false positives (Eval = Pval * nb_tests) 8 sig Significance (sig = -log10(Eval)) 9 rank rank of the pattern according to sorting criterion 10 -989.5 occurrences in window 1 [-999,-980] 11 -969.5 occurrences in window 2 [-979,-960] 12 -949.5 occurrences in window 3 [-959,-940] 13 -929.5 occurrences in window 4 [-939,-920] 14 -909.5 occurrences in window 5 [-919,-900] 15 -889.5 occurrences in window 6 [-899,-880] 16 -869.5 occurrences in window 7 [-879,-860] 17 -849.5 occurrences in window 8 [-859,-840] 18 -829.5 occurrences in window 9 [-839,-820] 19 -809.5 occurrences in window 10 [-819,-800] 20 -789.5 occurrences in window 11 [-799,-780] 21 -769.5 occurrences in window 12 [-779,-760] 22 -749.5 occurrences in window 13 [-759,-740] 23 -729.5 occurrences in window 14 [-739,-720] 24 -709.5 occurrences in window 15 [-719,-700] 25 -689.5 occurrences in window 16 [-699,-680] 26 -669.5 occurrences in window 17 [-679,-660] 27 -649.5 occurrences in window 18 [-659,-640] 28 -629.5 occurrences in window 19 [-639,-620] 29 -609.5 occurrences in window 20 [-619,-600] 30 -589.5 occurrences in window 21 [-599,-580] 31 -569.5 occurrences in window 22 [-579,-560] 32 -549.5 occurrences in window 23 [-559,-540] 33 -529.5 occurrences in window 24 [-539,-520] 34 -509.5 occurrences in window 25 [-519,-500] 35 -489.5 occurrences in window 26 [-499,-480] 36 -469.5 occurrences in window 27 [-479,-460] 37 -449.5 occurrences in window 28 [-459,-440] 38 -429.5 occurrences in window 29 [-439,-420] 39 -409.5 occurrences in window 30 [-419,-400] 40 -389.5 occurrences in window 31 [-399,-380] 41 -369.5 occurrences in window 32 [-379,-360] 42 -349.5 occurrences in window 33 [-359,-340] 43 -329.5 occurrences in window 34 [-339,-320] 44 -309.5 occurrences in window 35 [-319,-300] 45 -289.5 occurrences in window 36 [-299,-280] 46 -269.5 occurrences in window 37 [-279,-260] 47 -249.5 occurrences in window 38 [-259,-240] 48 -229.5 occurrences in window 39 [-239,-220] 49 -209.5 occurrences in window 40 [-219,-200] 50 -189.5 occurrences in window 41 [-199,-180] 51 -169.5 occurrences in window 42 [-179,-160] 52 -149.5 occurrences in window 43 [-159,-140] 53 -129.5 occurrences in window 44 [-139,-120] 54 -109.5 occurrences in window 45 [-119,-100] 55 -89.5 occurrences in window 46 [-99,-80] 56 -69.5 occurrences in window 47 [-79,-60] 57 -49.5 occurrences in window 48 [-59,-40] 58 -29.5 occurrences in window 49 [-39,-20] 59 -9.5 occurrences in window 50 [-19,0] 60 10.5 occurrences in window 51 [1,20] 61 30.5 occurrences in window 52 [21,40] 62 50.5 occurrences in window 53 [41,60] 63 70.5 occurrences in window 54 [61,80] 64 90.5 occurrences in window 55 [81,100] 65 110.5 occurrences in window 56 [101,120] 66 130.5 occurrences in window 57 [121,140] 67 150.5 occurrences in window 58 [141,160] 68 170.5 occurrences in window 59 [161,180] 69 190.5 occurrences in window 60 [181,200] 70 210.5 occurrences in window 61 [201,220] 71 230.5 occurrences in window 62 [221,240] 72 250.5 occurrences in window 63 [241,260] 73 270.5 occurrences in window 64 [261,280] 74 290.5 occurrences in window 65 [281,300] 75 310.5 occurrences in window 66 [301,320] 76 330.5 occurrences in window 67 [321,340] 77 350.5 occurrences in window 68 [341,360] 78 370.5 occurrences in window 69 [361,380] 79 390.5 occurrences in window 70 [381,400] 80 410.5 occurrences in window 71 [401,420] 81 430.5 occurrences in window 72 [421,440] 82 450.5 occurrences in window 73 [441,460] 83 470.5 occurrences in window 74 [461,480] 84 490.5 occurrences in window 75 [481,500] 85 510.5 occurrences in window 76 [501,520] 86 530.5 occurrences in window 77 [521,540] 87 550.5 occurrences in window 78 [541,560] 88 570.5 occurrences in window 79 [561,580] 89 590.5 occurrences in window 80 [581,600] 90 610.5 occurrences in window 81 [601,620] 91 630.5 occurrences in window 82 [621,640] 92 650.5 occurrences in window 83 [641,660] 93 670.5 occurrences in window 84 [661,680] 94 690.5 occurrences in window 85 [681,700] 95 710.5 occurrences in window 86 [701,720] 96 730.5 occurrences in window 87 [721,740] 97 750.5 occurrences in window 88 [741,760] 98 770.5 occurrences in window 89 [761,780] 99 790.5 occurrences in window 90 [781,800] 100 810.5 occurrences in window 91 [801,820] 101 830.5 occurrences in window 92 [821,840] 102 850.5 occurrences in window 93 [841,860] 103 870.5 occurrences in window 94 [861,880] 104 890.5 occurrences in window 95 [881,900] 105 910.5 occurrences in window 96 [901,920] 106 930.5 occurrences in window 97 [921,940] 107 950.5 occurrences in window 98 [941,960] 108 970.5 occurrences in window 99 [961,980] 109 990.5 occurrences in window 100 [981,1000]
| seq | id | occ | chi2 | df | Pval | Eval | sig | rank | -989.5 | -969.5 | -949.5 | -929.5 | -909.5 | -889.5 | -869.5 | -849.5 | -829.5 | -809.5 | -789.5 | -769.5 | -749.5 | -729.5 | -709.5 | -689.5 | -669.5 | -649.5 | -629.5 | -609.5 | -589.5 | -569.5 | -549.5 | -529.5 | -509.5 | -489.5 | -469.5 | -449.5 | -429.5 | -409.5 | -389.5 | -369.5 | -349.5 | -329.5 | -309.5 | -289.5 | -269.5 | -249.5 | -229.5 | -209.5 | -189.5 | -169.5 | -149.5 | -129.5 | -109.5 | -89.5 | -69.5 | -49.5 | -29.5 | -9.5 | 10.5 | 30.5 | 50.5 | 70.5 | 90.5 | 110.5 | 130.5 | 150.5 | 170.5 | 190.5 | 210.5 | 230.5 | 250.5 | 270.5 | 290.5 | 310.5 | 330.5 | 350.5 | 370.5 | 390.5 | 410.5 | 430.5 | 450.5 | 470.5 | 490.5 | 510.5 | 530.5 | 550.5 | 570.5 | 590.5 | 610.5 | 630.5 | 650.5 | 670.5 | 690.5 | 710.5 | 730.5 | 750.5 | 770.5 | 790.5 | 810.5 | 830.5 | 850.5 | 870.5 | 890.5 | 910.5 | 930.5 | 950.5 | 970.5 | 990.5 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| g | g | 40279 | 160.5 | 99 | 9.1e-05 | 0.00036 | 3.44 | 1 | 378 | 328 | 368 | 368 | 347 | 415 | 345 | 339 | 382 | 371 | 318 | 360 | 395 | 374 | 363 | 369 | 423 | 387 | 367 | 385 | 359 | 395 | 367 | 415 | 459 | 465 | 453 | 391 | 439 | 467 | 433 | 461 | 415 | 448 | 425 | 428 | 450 | 438 | 417 | 432 | 467 | 433 | 459 | 418 | 435 | 439 | 456 | 426 | 414 | 441 | 427 | 400 | 430 | 421 | 418 | 383 | 387 | 429 | 427 | 406 | 426 | 438 | 449 | 422 | 448 | 413 | 444 | 393 | 371 | 468 | 430 | 420 | 440 | 405 | 412 | 396 | 396 | 382 | 405 | 352 | 436 | 368 | 321 | 374 | 386 | 386 | 382 | 333 | 404 | 394 | 381 | 387 | 380 | 387 | 356 | 392 | 374 | 331 | 368 | 374 |
| a | a | 140357 | 107.0 | 99 | 2.7e-01 | 1.1 | -0.04 | 2 | 1215 | 1297 | 1219 | 1237 | 1271 | 1241 | 1296 | 1282 | 1273 | 1263 | 1314 | 1324 | 1279 | 1335 | 1331 | 1295 | 1325 | 1254 | 1278 | 1281 | 1300 | 1259 | 1361 | 1335 | 1344 | 1360 | 1406 | 1465 | 1465 | 1454 | 1526 | 1474 | 1478 | 1501 | 1454 | 1553 | 1510 | 1491 | 1523 | 1491 | 1580 | 1558 | 1590 | 1613 | 1526 | 1525 | 1454 | 1521 | 1501 | 1506 | 1565 | 1511 | 1549 | 1440 | 1520 | 1513 | 1506 | 1538 | 1538 | 1472 | 1575 | 1522 | 1556 | 1530 | 1545 | 1460 | 1464 | 1451 | 1490 | 1500 | 1451 | 1528 | 1494 | 1495 | 1475 | 1418 | 1440 | 1326 | 1362 | 1436 | 1358 | 1409 | 1323 | 1316 | 1299 | 1319 | 1287 | 1381 | 1293 | 1312 | 1284 | 1247 | 1263 | 1299 | 1292 | 1254 | 1269 | 1237 | 1250 | 1261 |
| c | c | 40842 | 97.5 | 99 | 5.2e-01 | 2.1 | -0.32 | 3 | 380 | 338 | 391 | 378 | 373 | 360 | 361 | 369 | 377 | 390 | 397 | 361 | 383 | 383 | 379 | 389 | 350 | 373 | 410 | 406 | 415 | 379 | 360 | 409 | 426 | 398 | 414 | 451 | 387 | 455 | 395 | 440 | 441 | 415 | 474 | 430 | 462 | 452 | 478 | 469 | 398 | 464 | 430 | 414 | 428 | 467 | 476 | 445 | 450 | 478 | 430 | 440 | 461 | 471 | 445 | 421 | 423 | 448 | 435 | 472 | 440 | 433 | 433 | 439 | 412 | 465 | 439 | 413 | 424 | 404 | 430 | 388 | 384 | 417 | 414 | 401 | 394 | 389 | 398 | 378 | 371 | 387 | 406 | 417 | 385 | 371 | 366 | 412 | 393 | 382 | 372 | 364 | 393 | 327 | 385 | 362 | 355 | 378 | 368 | 359 |
| t | t | 138629 | 77.4 | 99 | 9.5e-01 | 3.8 | -0.58 | 4 | 1180 | 1202 | 1216 | 1246 | 1249 | 1217 | 1221 | 1227 | 1198 | 1234 | 1286 | 1277 | 1279 | 1265 | 1296 | 1347 | 1301 | 1380 | 1363 | 1359 | 1353 | 1372 | 1336 | 1401 | 1420 | 1437 | 1407 | 1448 | 1500 | 1419 | 1458 | 1453 | 1496 | 1446 | 1500 | 1467 | 1484 | 1537 | 1482 | 1522 | 1495 | 1493 | 1455 | 1475 | 1497 | 1480 | 1526 | 1487 | 1531 | 1511 | 1518 | 1595 | 1485 | 1555 | 1504 | 1566 | 1557 | 1473 | 1513 | 1590 | 1485 | 1515 | 1479 | 1507 | 1453 | 1506 | 1456 | 1533 | 1512 | 1406 | 1451 | 1432 | 1464 | 1426 | 1379 | 1439 | 1359 | 1404 | 1317 | 1296 | 1280 | 1274 | 1374 | 1309 | 1333 | 1304 | 1345 | 1266 | 1295 | 1277 | 1244 | 1282 | 1198 | 1199 | 1198 | 1222 | 1213 | 1240 | 1195 | 1175 |
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