/var/www/html/rsat/public_html/tmp/www-data/2026/05/18/peak-motifs.2026-05-18.122309_2026-05-18.122309_s78tRo/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab 
 compare-matrices  -v 1 -format transfac -file $RSAT/public_html/tmp/www-data/2026/05/18/peak-motifs.2026-05-18.122309_2026-05-18.122309_s78tRo/results/discovered_motifs/peak-motifs_motifs_discovered.tf -distinct -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/05/18/peak-motifs.2026-05-18.122309_2026-05-18.122309_s78tRo/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/tmp/www-data/2026/05/18/peak-motifs.2026-05-18.122309_2026-05-18.122309_s78tRo/results/discovered_motifs/peak-motifs_motifs_discovered.tf
	file1 	$RSAT/public_html/tmp/www-data/2026/05/18/peak-motifs.2026-05-18.122309_2026-05-18.122309_s78tRo/results/discovered_motifs/peak-motifs_motifs_discovered.tf
 Output files
	match_table_txt	$RSAT/public_html/tmp/www-data/2026/05/18/peak-motifs.2026-05-18.122309_2026-05-18.122309_s78tRo/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab
	alignments_1ton	$RSAT/public_html/tmp/www-data/2026/05/18/peak-motifs.2026-05-18.122309_2026-05-18.122309_s78tRo/results/discovered_motifs/peak-motifs_motifs_disco_compa_alignments_1ton.tab
	prefix       	$RSAT/public_html/tmp/www-data/2026/05/18/peak-motifs.2026-05-18.122309_2026-05-18.122309_s78tRo/results/discovered_motifs/peak-motifs_motifs_disco_compa
	alignments_1ton_html	$RSAT/public_html/tmp/www-data/2026/05/18/peak-motifs.2026-05-18.122309_2026-05-18.122309_s78tRo/results/discovered_motifs/peak-motifs_motifs_disco_compa_alignments_1ton.html
	match_table_html	$RSAT/public_html/tmp/www-data/2026/05/18/peak-motifs.2026-05-18.122309_2026-05-18.122309_s78tRo/results/discovered_motifs/peak-motifs_motifs_disco_compa.html
	html_index   	$RSAT/public_html/tmp/www-data/2026/05/18/peak-motifs.2026-05-18.122309_2026-05-18.122309_s78tRo/results/discovered_motifs/peak-motifs_motifs_disco_compa_index.html
 Matrices
	file1	10 matrices	$RSAT/public_html/tmp/www-data/2026/05/18/peak-motifs.2026-05-18.122309_2026-05-18.122309_s78tRo/results/discovered_motifs/peak-motifs_motifs_discovered.tf
		file1	1	23	208
		file1	2	24	245
		file1	3	13	609
		file1	4	20	400
		file1	5	16	226
		file1	6	24	259
		file1	7	13	681
		file1	8	21	210
		file1	9	19	284
		file1	10	19	156
	file2	10 matrices	$RSAT/public_html/tmp/www-data/2026/05/18/peak-motifs.2026-05-18.122309_2026-05-18.122309_s78tRo/results/discovered_motifs/peak-motifs_motifs_discovered.tf
		file2		1		23		208
		file2		2		24		245
		file2		3		13		609
		file2		4		20		400
		file2		5		16		226
		file2		6		24		259
		file2		7		13		681
		file2		8		21		210
		file2		9		19		284
		file2		10		19		156
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_6nt_test_vs_ctrl_m2 oligos_6nt_test_vs_ctrl_m2 oligos_6nt_test_vs_ctrl_m2 oligos_6nt_test_vs_ctrl_m2 1.000 1.000 24 24 24 24 1.0000 1.0000 1.0000 D 0
oligos_6nt_test_vs_ctrl_m1 oligos_6nt_test_vs_ctrl_m1 oligos_6nt_test_vs_ctrl_m1 oligos_6nt_test_vs_ctrl_m1 1.000 1.000 23 23 23 23 1.0000 1.0000 1.0000 D 0
oligos_6nt_test_vs_ctrl_m3 oligos_6nt_test_vs_ctrl_m3 oligos_6nt_test_vs_ctrl_m3 oligos_6nt_test_vs_ctrl_m3 1.000 1.000 13 13 13 13 1.0000 1.0000 1.0000 D 0
oligos_7nt_test_vs_ctrl_m2 oligos_7nt_test_vs_ctrl_m2 oligos_7nt_test_vs_ctrl_m2 oligos_7nt_test_vs_ctrl_m2 1.000 1.000 13 13 13 13 1.0000 1.0000 1.0000 D 0
oligos_7nt_test_vs_ctrl_m3 oligos_7nt_test_vs_ctrl_m3 oligos_7nt_test_vs_ctrl_m3 oligos_7nt_test_vs_ctrl_m3 1.000 1.000 21 21 21 21 1.0000 1.0000 1.0000 D 0
oligos_6nt_test_vs_ctrl_m5 oligos_6nt_test_vs_ctrl_m5 oligos_6nt_test_vs_ctrl_m5 oligos_6nt_test_vs_ctrl_m5 1.000 1.000 16 16 16 16 1.0000 1.0000 1.0000 D 0
oligos_7nt_test_vs_ctrl_m1 oligos_7nt_test_vs_ctrl_m1 oligos_7nt_test_vs_ctrl_m1 oligos_7nt_test_vs_ctrl_m1 1.000 1.000 24 24 24 24 1.0000 1.0000 1.0000 D 0
oligos_7nt_test_vs_ctrl_m4 oligos_7nt_test_vs_ctrl_m4 oligos_7nt_test_vs_ctrl_m4 oligos_7nt_test_vs_ctrl_m4 1.000 1.000 19 19 19 19 1.0000 1.0000 1.0000 D 0
oligos_7nt_test_vs_ctrl_m5 oligos_7nt_test_vs_ctrl_m5 oligos_7nt_test_vs_ctrl_m5 oligos_7nt_test_vs_ctrl_m5 1.000 1.000 19 19 19 19 1.0000 1.0000 1.0000 D 0
oligos_6nt_test_vs_ctrl_m4 oligos_6nt_test_vs_ctrl_m4 oligos_6nt_test_vs_ctrl_m4 oligos_6nt_test_vs_ctrl_m4 1.000 1.000 20 20 20 20 1.0000 1.0000 1.0000 D 0
oligos_6nt_test_vs_ctrl_m3 oligos_7nt_test_vs_ctrl_m2 oligos_6nt_test_vs_ctrl_m3 oligos_7nt_test_vs_ctrl_m2 0.952 0.952 13 13 13 13 1.0000 1.0000 1.0000 R 0
oligos_7nt_test_vs_ctrl_m2 oligos_6nt_test_vs_ctrl_m3 oligos_7nt_test_vs_ctrl_m2 oligos_6nt_test_vs_ctrl_m3 0.952 0.952 13 13 13 13 1.0000 1.0000 1.0000 R 0
oligos_7nt_test_vs_ctrl_m1 oligos_6nt_test_vs_ctrl_m2 oligos_7nt_test_vs_ctrl_m1 oligos_6nt_test_vs_ctrl_m2 0.988 0.909 24 24 23 25 0.9200 0.9583 0.9583 D 1
oligos_6nt_test_vs_ctrl_m2 oligos_7nt_test_vs_ctrl_m1 oligos_6nt_test_vs_ctrl_m2 oligos_7nt_test_vs_ctrl_m1 0.988 0.909 24 24 23 25 0.9200 0.9583 0.9583 D -1
oligos_6nt_test_vs_ctrl_m2 oligos_6nt_test_vs_ctrl_m1 oligos_6nt_test_vs_ctrl_m2 oligos_6nt_test_vs_ctrl_m1 0.907 0.869 24 23 23 24 0.9583 0.9583 1.0000 D 0
oligos_6nt_test_vs_ctrl_m1 oligos_6nt_test_vs_ctrl_m2 oligos_6nt_test_vs_ctrl_m1 oligos_6nt_test_vs_ctrl_m2 0.907 0.869 23 24 23 24 0.9583 1.0000 0.9583 D 0
oligos_6nt_test_vs_ctrl_m1 oligos_7nt_test_vs_ctrl_m1 oligos_6nt_test_vs_ctrl_m1 oligos_7nt_test_vs_ctrl_m1 0.879 0.843 23 24 23 24 0.9583 1.0000 0.9583 D -1
oligos_7nt_test_vs_ctrl_m1 oligos_6nt_test_vs_ctrl_m1 oligos_7nt_test_vs_ctrl_m1 oligos_6nt_test_vs_ctrl_m1 0.879 0.843 24 23 23 24 0.9583 0.9583 1.0000 D 1
oligos_7nt_test_vs_ctrl_m3 oligos_7nt_test_vs_ctrl_m1 oligos_7nt_test_vs_ctrl_m3 oligos_7nt_test_vs_ctrl_m1 0.919 0.804 21 24 21 24 0.8750 1.0000 0.8750 D 0
oligos_7nt_test_vs_ctrl_m1 oligos_7nt_test_vs_ctrl_m3 oligos_7nt_test_vs_ctrl_m1 oligos_7nt_test_vs_ctrl_m3 0.919 0.804 24 21 21 24 0.8750 0.8750 1.0000 D 0
oligos_6nt_test_vs_ctrl_m2 oligos_7nt_test_vs_ctrl_m3 oligos_6nt_test_vs_ctrl_m2 oligos_7nt_test_vs_ctrl_m3 0.877 0.767 24 21 21 24 0.8750 0.8750 1.0000 D 3
oligos_7nt_test_vs_ctrl_m3 oligos_6nt_test_vs_ctrl_m2 oligos_7nt_test_vs_ctrl_m3 oligos_6nt_test_vs_ctrl_m2 0.877 0.767 21 24 21 24 0.8750 1.0000 0.8750 D -3
oligos_6nt_test_vs_ctrl_m1 oligos_7nt_test_vs_ctrl_m3 oligos_6nt_test_vs_ctrl_m1 oligos_7nt_test_vs_ctrl_m3 0.920 0.767 23 21 20 24 0.8333 0.8696 0.9524 D -1
oligos_7nt_test_vs_ctrl_m3 oligos_6nt_test_vs_ctrl_m1 oligos_7nt_test_vs_ctrl_m3 oligos_6nt_test_vs_ctrl_m1 0.920 0.767 21 23 20 24 0.8333 0.9524 0.8696 D 1
oligos_7nt_test_vs_ctrl_m4 oligos_7nt_test_vs_ctrl_m3 oligos_7nt_test_vs_ctrl_m4 oligos_7nt_test_vs_ctrl_m3 0.808 0.731 19 21 19 21 0.9048 1.0000 0.9048 D -2
oligos_7nt_test_vs_ctrl_m3 oligos_7nt_test_vs_ctrl_m4 oligos_7nt_test_vs_ctrl_m3 oligos_7nt_test_vs_ctrl_m4 0.808 0.731 21 19 19 21 0.9048 0.9048 1.0000 D 2
oligos_6nt_test_vs_ctrl_m4 oligos_6nt_test_vs_ctrl_m1 oligos_6nt_test_vs_ctrl_m4 oligos_6nt_test_vs_ctrl_m1 0.815 0.709 20 23 20 23 0.8696 1.0000 0.8696 D -3
oligos_6nt_test_vs_ctrl_m1 oligos_6nt_test_vs_ctrl_m4 oligos_6nt_test_vs_ctrl_m1 oligos_6nt_test_vs_ctrl_m4 0.815 0.709 23 20 20 23 0.8696 0.8696 1.0000 D 3
oligos_6nt_test_vs_ctrl_m4 oligos_7nt_test_vs_ctrl_m3 oligos_6nt_test_vs_ctrl_m4 oligos_7nt_test_vs_ctrl_m3 0.728 0.693 20 21 20 21 0.9524 1.0000 0.9524 D 0
oligos_7nt_test_vs_ctrl_m3 oligos_6nt_test_vs_ctrl_m4 oligos_7nt_test_vs_ctrl_m3 oligos_6nt_test_vs_ctrl_m4 0.728 0.693 21 20 20 21 0.9524 0.9524 1.0000 D 0
oligos_7nt_test_vs_ctrl_m5 oligos_6nt_test_vs_ctrl_m2 oligos_7nt_test_vs_ctrl_m5 oligos_6nt_test_vs_ctrl_m2 0.803 0.636 19 24 19 24 0.7917 1.0000 0.7917 D -2
oligos_6nt_test_vs_ctrl_m2 oligos_7nt_test_vs_ctrl_m5 oligos_6nt_test_vs_ctrl_m2 oligos_7nt_test_vs_ctrl_m5 0.803 0.636 24 19 19 24 0.7917 0.7917 1.0000 D 2
oligos_7nt_test_vs_ctrl_m4 oligos_6nt_test_vs_ctrl_m4 oligos_7nt_test_vs_ctrl_m4 oligos_6nt_test_vs_ctrl_m4 0.811 0.627 19 20 17 22 0.7727 0.8947 0.8500 D 2
oligos_6nt_test_vs_ctrl_m4 oligos_7nt_test_vs_ctrl_m4 oligos_6nt_test_vs_ctrl_m4 oligos_7nt_test_vs_ctrl_m4 0.811 0.627 20 19 17 22 0.7727 0.8500 0.8947 D -2
oligos_7nt_test_vs_ctrl_m1 oligos_7nt_test_vs_ctrl_m5 oligos_7nt_test_vs_ctrl_m1 oligos_7nt_test_vs_ctrl_m5 0.786 0.622 24 19 19 24 0.7917 0.7917 1.0000 D 3
oligos_7nt_test_vs_ctrl_m5 oligos_7nt_test_vs_ctrl_m1 oligos_7nt_test_vs_ctrl_m5 oligos_7nt_test_vs_ctrl_m1 0.786 0.622 19 24 19 24 0.7917 1.0000 0.7917 D -3
oligos_7nt_test_vs_ctrl_m3 oligos_7nt_test_vs_ctrl_m5 oligos_7nt_test_vs_ctrl_m3 oligos_7nt_test_vs_ctrl_m5 0.755 0.617 21 19 18 22 0.8182 0.8571 0.9474 D -1
oligos_7nt_test_vs_ctrl_m5 oligos_7nt_test_vs_ctrl_m3 oligos_7nt_test_vs_ctrl_m5 oligos_7nt_test_vs_ctrl_m3 0.755 0.617 19 21 18 22 0.8182 0.9474 0.8571 D 1
oligos_7nt_test_vs_ctrl_m4 oligos_6nt_test_vs_ctrl_m1 oligos_7nt_test_vs_ctrl_m4 oligos_6nt_test_vs_ctrl_m1 0.733 0.606 19 23 19 23 0.8261 1.0000 0.8261 D -1
oligos_6nt_test_vs_ctrl_m1 oligos_7nt_test_vs_ctrl_m4 oligos_6nt_test_vs_ctrl_m1 oligos_7nt_test_vs_ctrl_m4 0.733 0.606 23 19 19 23 0.8261 0.8261 1.0000 D 1
oligos_7nt_test_vs_ctrl_m4 oligos_6nt_test_vs_ctrl_m2 oligos_7nt_test_vs_ctrl_m4 oligos_6nt_test_vs_ctrl_m2 0.760 0.602 19 24 19 24 0.7917 1.0000 0.7917 D -5
oligos_6nt_test_vs_ctrl_m2 oligos_7nt_test_vs_ctrl_m4 oligos_6nt_test_vs_ctrl_m2 oligos_7nt_test_vs_ctrl_m4 0.760 0.602 24 19 19 24 0.7917 0.7917 1.0000 D 5
oligos_7nt_test_vs_ctrl_m5 oligos_6nt_test_vs_ctrl_m1 oligos_7nt_test_vs_ctrl_m5 oligos_6nt_test_vs_ctrl_m1 0.726 0.600 19 23 19 23 0.8261 1.0000 0.8261 D -2
oligos_6nt_test_vs_ctrl_m1 oligos_7nt_test_vs_ctrl_m5 oligos_6nt_test_vs_ctrl_m1 oligos_7nt_test_vs_ctrl_m5 0.726 0.600 23 19 19 23 0.8261 0.8261 1.0000 D 2
oligos_6nt_test_vs_ctrl_m2 oligos_6nt_test_vs_ctrl_m4 oligos_6nt_test_vs_ctrl_m2 oligos_6nt_test_vs_ctrl_m4 0.716 0.596 24 20 20 24 0.8333 0.8333 1.0000 D 3
oligos_6nt_test_vs_ctrl_m4 oligos_6nt_test_vs_ctrl_m2 oligos_6nt_test_vs_ctrl_m4 oligos_6nt_test_vs_ctrl_m2 0.716 0.596 20 24 20 24 0.8333 1.0000 0.8333 D -3
oligos_7nt_test_vs_ctrl_m4 oligos_7nt_test_vs_ctrl_m1 oligos_7nt_test_vs_ctrl_m4 oligos_7nt_test_vs_ctrl_m1 0.750 0.593 19 24 19 24 0.7917 1.0000 0.7917 D -2
oligos_7nt_test_vs_ctrl_m1 oligos_7nt_test_vs_ctrl_m4 oligos_7nt_test_vs_ctrl_m1 oligos_7nt_test_vs_ctrl_m4 0.750 0.593 24 19 19 24 0.7917 0.7917 1.0000 D 2
oligos_7nt_test_vs_ctrl_m1 oligos_6nt_test_vs_ctrl_m4 oligos_7nt_test_vs_ctrl_m1 oligos_6nt_test_vs_ctrl_m4 0.707 0.589 24 20 20 24 0.8333 0.8333 1.0000 D 4
oligos_6nt_test_vs_ctrl_m4 oligos_7nt_test_vs_ctrl_m1 oligos_6nt_test_vs_ctrl_m4 oligos_7nt_test_vs_ctrl_m1 0.707 0.589 20 24 20 24 0.8333 1.0000 0.8333 D -4
oligos_7nt_test_vs_ctrl_m4 oligos_7nt_test_vs_ctrl_m2 oligos_7nt_test_vs_ctrl_m4 oligos_7nt_test_vs_ctrl_m2 0.762 0.521 19 13 13 19 0.6842 0.6842 1.0000 R 0
oligos_7nt_test_vs_ctrl_m2 oligos_7nt_test_vs_ctrl_m4 oligos_7nt_test_vs_ctrl_m2 oligos_7nt_test_vs_ctrl_m4 0.762 0.521 13 19 13 19 0.6842 1.0000 0.6842 R -6 
 Host name	rsat
 Job started	2026-05-18.122353
 Job done	2026-05-18.122404
 Seconds	0.57
	user	0.57
	system	0.39
	cuser	8.8
;	csystem	1.24