One-to-n alignments

Command: compare-matrices  -v 1 -format transfac -file $RSAT/public_html/tmp/www-data/2026/05/18/peak-motifs.2026-05-18.122309_2026-05-18.122309_s78tRo/results/discovered_motifs/peak-motifs_motifs_discovered.tf -distinct -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/05/18/peak-motifs.2026-05-18.122309_2026-05-18.122309_s78tRo/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab

One-to-n matrix alignment; reference matrix: oligos_6nt_test_vs_ctrl_m5_shift0 ; 2 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_test_vs_ctrl_m5_shift0 (oligos_6nt_test_vs_ctrl_m5)
; oligos_6nt_test_vs_ctrl_m5; m=0 (reference); ncol1=16; shift=0; ncol=16; wwacTTAGCTAAgtww ; Alignment reference a 81 88 134 40 11 26 200 12 19 17 195 204 27 49 88 88 c 35 23 15 149 7 3 6 2 193 5 3 4 11 32 25 20 g 20 25 30 10 4 3 5 193 2 6 3 7 146 15 24 36 t 90 90 47 27 204 194 15 19 12 198 25 11 42 130 89 82

oligos_6nt_test_vs_ctrl_m5_shift0 (oligos_6nt_test_vs_ctrl_m5)
; oligos_6nt_test_vs_ctrl_m5 versus oligos_6nt_test_vs_ctrl_m5; m=1/1; ncol2=16; w=0; offset=0; strand=D; shift=0; score= 1; wwacTTAGCTAAgtww ; cor=; Ncor= a 81 88 134 40 11 26 200 12 19 17 195 204 27 49 88 88 c 35 23 15 149 7 3 6 2 193 5 3 4 11 32 25 20 g 20 25 30 10 4 3 5 193 2 6 3 7 146 15 24 36 t 90 90 47 27 204 194 15 19 12 198 25 11 42 130 89 82

One-to-n matrix alignment; reference matrix: oligos_6nt_test_vs_ctrl_m4_shift4 ; 7 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_test_vs_ctrl_m4_shift4 (oligos_6nt_test_vs_ctrl_m4)
; oligos_6nt_test_vs_ctrl_m4; m=0 (reference); ncol1=20; shift=4; ncol=24; ----wwAAATCAAAAAAgAAArww ; Alignment reference a 0 0 0 0 169 169 308 327 347 82 56 374 368 336 348 367 326 80 318 321 338 101 190 209 c 0 0 0 0 40 59 25 24 11 14 294 5 9 10 18 4 9 24 25 11 11 28 60 34 g 0 0 0 0 55 47 12 14 10 28 14 1 11 14 11 4 21 212 15 24 20 178 35 47 t 0 0 0 0 136 125 55 35 32 276 36 20 12 40 23 25 44 84 42 44 31 93 115 110

oligos_6nt_test_vs_ctrl_m4_shift4 (oligos_6nt_test_vs_ctrl_m4)
; oligos_6nt_test_vs_ctrl_m4 versus oligos_6nt_test_vs_ctrl_m4; m=1/6; ncol2=20; w=0; offset=0; strand=D; shift=4; score= 1; ----wwAAATCAAAAAAgAAArww ; cor=; Ncor= a 0 0 0 0 169 169 308 327 347 82 56 374 368 336 348 367 326 80 318 321 338 101 190 209 c 0 0 0 0 40 59 25 24 11 14 294 5 9 10 18 4 9 24 25 11 11 28 60 34 g 0 0 0 0 55 47 12 14 10 28 14 1 11 14 11 4 21 212 15 24 20 178 35 47 t 0 0 0 0 136 125 55 35 32 276 36 20 12 40 23 25 44 84 42 44 31 93 115 110

oligos_6nt_test_vs_ctrl_m1_shift1 (oligos_6nt_test_vs_ctrl_m1)
; oligos_6nt_test_vs_ctrl_m4 versus oligos_6nt_test_vs_ctrl_m1; m=2/6; ncol2=23; w=-3; offset=-3; strand=D; shift=1; score=0.708502; -awaAGcAAGCAAAaAAraAAraw ; cor=; Ncor= a 0 95 84 107 188 29 41 189 188 27 33 178 190 147 141 177 172 64 135 172 170 64 96 117 c 0 23 44 10 3 3 138 2 3 5 150 1 3 6 35 4 2 15 30 5 6 16 42 9 g 0 41 22 48 5 154 9 2 3 157 9 4 6 39 6 5 10 102 15 11 8 89 22 26 t 0 49 58 43 12 22 20 15 14 19 16 25 9 16 26 22 24 27 28 20 24 39 48 56

oligos_7nt_test_vs_ctrl_m3_shift4 (oligos_7nt_test_vs_ctrl_m3)
; oligos_6nt_test_vs_ctrl_m4 versus oligos_7nt_test_vs_ctrl_m3; m=3/6; ncol2=21; w=0; offset=0; strand=D; shift=4; score=0.693398; ----wwaAAgCAAgCAAAAAAAdw ; cor=; Ncor= a 0 0 0 0 110 100 130 184 191 46 25 192 186 52 19 182 182 177 143 181 191 156 62 118 c 0 0 0 0 19 29 39 5 3 5 162 4 2 4 175 2 7 4 31 5 4 11 35 16 g 0 0 0 0 21 24 14 8 1 138 11 3 5 137 2 3 9 18 9 8 5 18 59 15 t 0 0 0 0 60 57 27 13 15 21 12 11 17 17 14 23 12 11 27 16 10 25 54 61

oligos_7nt_test_vs_ctrl_m4_shift2 (oligos_7nt_test_vs_ctrl_m4)
; oligos_6nt_test_vs_ctrl_m4 versus oligos_7nt_test_vs_ctrl_m4; m=4/6; ncol2=19; w=-2; offset=-2; strand=D; shift=2; score=0.626798; --wwwTCAATCAAAAAAArww--- ; cor=; Ncor= a 0 0 117 142 94 43 44 252 254 42 19 264 260 238 226 248 239 223 84 139 149 0 0 0 c 0 0 59 37 19 10 205 8 4 6 244 9 5 7 19 7 3 12 37 28 30 0 0 0 g 0 0 18 19 15 9 7 4 8 12 4 0 4 3 5 8 8 8 93 26 33 0 0 0 t 0 0 90 86 156 222 28 20 18 224 17 11 15 36 34 21 34 41 70 91 72 0 0 0

oligos_6nt_test_vs_ctrl_m2_shift1 (oligos_6nt_test_vs_ctrl_m2)
; oligos_6nt_test_vs_ctrl_m4 versus oligos_6nt_test_vs_ctrl_m2; m=5/6; ncol2=24; w=-3; offset=-3; strand=D; shift=1; score=0.596358; -whaArCAArCAAACAAAaAAahw ; cor=; Ncor= a 0 109 73 151 225 65 34 223 225 72 23 219 224 184 32 213 223 206 145 205 193 125 106 140 c 0 19 81 11 7 7 192 3 2 8 187 0 3 2 184 5 4 6 58 4 9 19 62 23 g 0 42 20 41 2 143 4 3 7 140 9 3 3 35 5 2 3 17 6 5 10 49 13 17 t 0 75 71 42 11 30 15 16 11 25 26 23 15 24 24 25 15 16 36 31 33 52 64 65

oligos_7nt_test_vs_ctrl_m1_shift0 (oligos_7nt_test_vs_ctrl_m1)
; oligos_6nt_test_vs_ctrl_m4 versus oligos_7nt_test_vs_ctrl_m1; m=6/6; ncol2=24; w=-4; offset=-4; strand=D; shift=0; score=0.588812; awmAArCAArCAAACAAAmAAAhw ; cor=; Ncor= a 174 118 104 216 233 77 34 235 243 99 24 238 238 202 28 235 242 219 125 217 221 186 97 151 c 20 24 89 4 7 12 198 2 1 9 194 1 7 4 194 2 4 6 80 7 13 13 76 21 g 20 45 13 11 4 139 5 3 5 128 10 2 3 32 3 0 3 16 9 4 5 24 14 14 t 45 72 53 28 15 31 22 19 10 23 31 18 11 21 34 22 10 18 45 31 20 36 72 73

One-to-n matrix alignment; reference matrix: oligos_7nt_test_vs_ctrl_m5_shift3 ; 6 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_test_vs_ctrl_m5_shift3 (oligos_7nt_test_vs_ctrl_m5)
; oligos_7nt_test_vs_ctrl_m5; m=0 (reference); ncol1=19; shift=3; ncol=22; ---wAGCAAGCAAGCTAaywaw ; Alignment reference a 0 0 0 87 108 18 16 120 145 11 7 117 144 12 5 34 137 99 32 58 97 69 c 0 0 0 9 8 8 128 0 2 4 137 3 2 4 131 7 6 9 46 32 11 15 g 0 0 0 8 15 118 2 3 1 130 6 1 3 132 7 3 3 30 37 9 18 24 t 0 0 0 52 25 12 10 33 8 11 6 35 7 8 13 112 10 18 41 57 30 48

oligos_7nt_test_vs_ctrl_m5_shift3 (oligos_7nt_test_vs_ctrl_m5)
; oligos_7nt_test_vs_ctrl_m5 versus oligos_7nt_test_vs_ctrl_m5; m=1/5; ncol2=19; w=0; offset=0; strand=D; shift=3; score= 1; ---wAGCAAGCAAGCTAaywaw ; cor=; Ncor= a 0 0 0 87 108 18 16 120 145 11 7 117 144 12 5 34 137 99 32 58 97 69 c 0 0 0 9 8 8 128 0 2 4 137 3 2 4 131 7 6 9 46 32 11 15 g 0 0 0 8 15 118 2 3 1 130 6 1 3 132 7 3 3 30 37 9 18 24 t 0 0 0 52 25 12 10 33 8 11 6 35 7 8 13 112 10 18 41 57 30 48

oligos_6nt_test_vs_ctrl_m2_shift1 (oligos_6nt_test_vs_ctrl_m2)
; oligos_7nt_test_vs_ctrl_m5 versus oligos_6nt_test_vs_ctrl_m2; m=2/5; ncol2=24; w=-2; offset=-2; strand=D; shift=1; score=0.63599; -whaArCAArCAAACAAAaAAa ; cor=; Ncor= a 0 109 73 151 225 65 34 223 225 72 23 219 224 184 32 213 223 206 145 205 193 125 c 0 19 81 11 7 7 192 3 2 8 187 0 3 2 184 5 4 6 58 4 9 19 g 0 42 20 41 2 143 4 3 7 140 9 3 3 35 5 2 3 17 6 5 10 49 t 0 75 71 42 11 30 15 16 11 25 26 23 15 24 24 25 15 16 36 31 33 52

oligos_7nt_test_vs_ctrl_m1_shift0 (oligos_7nt_test_vs_ctrl_m1)
; oligos_7nt_test_vs_ctrl_m5 versus oligos_7nt_test_vs_ctrl_m1; m=3/5; ncol2=24; w=-3; offset=-3; strand=D; shift=0; score=0.622486; awmAArCAArCAAACAAAmAAA ; cor=; Ncor= a 174 118 104 216 233 77 34 235 243 99 24 238 238 202 28 235 242 219 125 217 221 186 c 20 24 89 4 7 12 198 2 1 9 194 1 7 4 194 2 4 6 80 7 13 13 g 20 45 13 11 4 139 5 3 5 128 10 2 3 32 3 0 3 16 9 4 5 24 t 45 72 53 28 15 31 22 19 10 23 31 18 11 21 34 22 10 18 45 31 20 36

oligos_7nt_test_vs_ctrl_m3_shift4 (oligos_7nt_test_vs_ctrl_m3)
; oligos_7nt_test_vs_ctrl_m5 versus oligos_7nt_test_vs_ctrl_m3; m=4/5; ncol2=21; w=0; offset=1; strand=D; shift=4; score=0.617328; ----wwaAAgCAAgCAAAAAAA ; cor=; Ncor= a 0 0 0 0 110 100 130 184 191 46 25 192 186 52 19 182 182 177 143 181 191 156 c 0 0 0 0 19 29 39 5 3 5 162 4 2 4 175 2 7 4 31 5 4 11 g 0 0 0 0 21 24 14 8 1 138 11 3 5 137 2 3 9 18 9 8 5 18 t 0 0 0 0 60 57 27 13 15 21 12 11 17 17 14 23 12 11 27 16 10 25

oligos_6nt_test_vs_ctrl_m1_shift1 (oligos_6nt_test_vs_ctrl_m1)
; oligos_7nt_test_vs_ctrl_m5 versus oligos_6nt_test_vs_ctrl_m1; m=5/5; ncol2=23; w=-2; offset=-2; strand=D; shift=1; score=0.59952; -awaAGcAAGCAAAaAAraAAr ; cor=; Ncor= a 0 95 84 107 188 29 41 189 188 27 33 178 190 147 141 177 172 64 135 172 170 64 c 0 23 44 10 3 3 138 2 3 5 150 1 3 6 35 4 2 15 30 5 6 16 g 0 41 22 48 5 154 9 2 3 157 9 4 6 39 6 5 10 102 15 11 8 89 t 0 49 58 43 12 22 20 15 14 19 16 25 9 16 26 22 24 27 28 20 24 39

One-to-n matrix alignment; reference matrix: oligos_6nt_test_vs_ctrl_m3_shift0 ; 3 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_test_vs_ctrl_m3_shift0 (oligos_6nt_test_vs_ctrl_m3)
; oligos_6nt_test_vs_ctrl_m3; m=0 (reference); ncol1=13; shift=0; ncol=13; wwTTCATTCAyww ; Alignment reference a 188 280 98 54 21 567 43 35 20 563 128 196 196 c 150 74 43 27 552 11 26 11 565 10 249 71 134 g 48 47 31 20 9 13 10 6 5 9 29 36 43 t 223 208 437 508 27 18 530 557 19 27 203 306 236

oligos_6nt_test_vs_ctrl_m3_shift0 (oligos_6nt_test_vs_ctrl_m3)
; oligos_6nt_test_vs_ctrl_m3 versus oligos_6nt_test_vs_ctrl_m3; m=1/2; ncol2=13; w=0; offset=0; strand=D; shift=0; score= 1; wwTTCATTCAyww ; cor=; Ncor= a 188 280 98 54 21 567 43 35 20 563 128 196 196 c 150 74 43 27 552 11 26 11 565 10 249 71 134 g 48 47 31 20 9 13 10 6 5 9 29 36 43 t 223 208 437 508 27 18 530 557 19 27 203 306 236

oligos_7nt_test_vs_ctrl_m2_rc_shift0 (oligos_7nt_test_vs_ctrl_m2_rc)
; oligos_6nt_test_vs_ctrl_m3 versus oligos_7nt_test_vs_ctrl_m2_rc; m=2/2; ncol2=13; w=0; offset=0; strand=R; shift=0; score=0.951956; wwTTCATTCAaww ; cor=; Ncor= a 249 308 18 31 40 625 34 28 39 622 461 274 243 c 135 84 13 14 575 12 17 7 569 18 31 59 115 g 53 55 8 10 16 13 15 10 9 11 20 51 46 t 244 234 642 626 50 31 615 636 64 30 169 297 277

One-to-n matrix alignment; reference matrix: oligos_6nt_test_vs_ctrl_m1_shift1 ; 8 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_test_vs_ctrl_m1_shift1 (oligos_6nt_test_vs_ctrl_m1)
; oligos_6nt_test_vs_ctrl_m1; m=0 (reference); ncol1=23; shift=1; ncol=24; -awaAGcAAGCAAAaAAraAAraw ; Alignment reference a 0 95 84 107 188 29 41 189 188 27 33 178 190 147 141 177 172 64 135 172 170 64 96 117 c 0 23 44 10 3 3 138 2 3 5 150 1 3 6 35 4 2 15 30 5 6 16 42 9 g 0 41 22 48 5 154 9 2 3 157 9 4 6 39 6 5 10 102 15 11 8 89 22 26 t 0 49 58 43 12 22 20 15 14 19 16 25 9 16 26 22 24 27 28 20 24 39 48 56

oligos_6nt_test_vs_ctrl_m1_shift1 (oligos_6nt_test_vs_ctrl_m1)
; oligos_6nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m1; m=1/7; ncol2=23; w=0; offset=0; strand=D; shift=1; score= 1; -awaAGcAAGCAAAaAAraAAraw ; cor=; Ncor= a 0 95 84 107 188 29 41 189 188 27 33 178 190 147 141 177 172 64 135 172 170 64 96 117 c 0 23 44 10 3 3 138 2 3 5 150 1 3 6 35 4 2 15 30 5 6 16 42 9 g 0 41 22 48 5 154 9 2 3 157 9 4 6 39 6 5 10 102 15 11 8 89 22 26 t 0 49 58 43 12 22 20 15 14 19 16 25 9 16 26 22 24 27 28 20 24 39 48 56

oligos_6nt_test_vs_ctrl_m2_shift1 (oligos_6nt_test_vs_ctrl_m2)
; oligos_6nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m2; m=2/7; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.868966; -whaArCAArCAAACAAAaAAahw ; cor=; Ncor= a 0 109 73 151 225 65 34 223 225 72 23 219 224 184 32 213 223 206 145 205 193 125 106 140 c 0 19 81 11 7 7 192 3 2 8 187 0 3 2 184 5 4 6 58 4 9 19 62 23 g 0 42 20 41 2 143 4 3 7 140 9 3 3 35 5 2 3 17 6 5 10 49 13 17 t 0 75 71 42 11 30 15 16 11 25 26 23 15 24 24 25 15 16 36 31 33 52 64 65

oligos_7nt_test_vs_ctrl_m1_shift0 (oligos_7nt_test_vs_ctrl_m1)
; oligos_6nt_test_vs_ctrl_m1 versus oligos_7nt_test_vs_ctrl_m1; m=3/7; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.842518; awmAArCAArCAAACAAAmAAAhw ; cor=; Ncor= a 174 118 104 216 233 77 34 235 243 99 24 238 238 202 28 235 242 219 125 217 221 186 97 151 c 20 24 89 4 7 12 198 2 1 9 194 1 7 4 194 2 4 6 80 7 13 13 76 21 g 20 45 13 11 4 139 5 3 5 128 10 2 3 32 3 0 3 16 9 4 5 24 14 14 t 45 72 53 28 15 31 22 19 10 23 31 18 11 21 34 22 10 18 45 31 20 36 72 73

oligos_7nt_test_vs_ctrl_m3_shift0 (oligos_7nt_test_vs_ctrl_m3)
; oligos_6nt_test_vs_ctrl_m1 versus oligos_7nt_test_vs_ctrl_m3; m=4/7; ncol2=21; w=-1; offset=-1; strand=D; shift=0; score=0.766823; wwaAAgCAAgCAAAAAAAdww--- ; cor=; Ncor= a 110 100 130 184 191 46 25 192 186 52 19 182 182 177 143 181 191 156 62 118 117 0 0 0 c 19 29 39 5 3 5 162 4 2 4 175 2 7 4 31 5 4 11 35 16 17 0 0 0 g 21 24 14 8 1 138 11 3 5 137 2 3 9 18 9 8 5 18 59 15 21 0 0 0 t 60 57 27 13 15 21 12 11 17 17 14 23 12 11 27 16 10 25 54 61 55 0 0 0

oligos_6nt_test_vs_ctrl_m4_shift4 (oligos_6nt_test_vs_ctrl_m4)
; oligos_6nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m4; m=5/7; ncol2=20; w=0; offset=3; strand=D; shift=4; score=0.708502; ----wwAAATCAAAAAAgAAArww ; cor=; Ncor= a 0 0 0 0 169 169 308 327 347 82 56 374 368 336 348 367 326 80 318 321 338 101 190 209 c 0 0 0 0 40 59 25 24 11 14 294 5 9 10 18 4 9 24 25 11 11 28 60 34 g 0 0 0 0 55 47 12 14 10 28 14 1 11 14 11 4 21 212 15 24 20 178 35 47 t 0 0 0 0 136 125 55 35 32 276 36 20 12 40 23 25 44 84 42 44 31 93 115 110

oligos_7nt_test_vs_ctrl_m4_shift2 (oligos_7nt_test_vs_ctrl_m4)
; oligos_6nt_test_vs_ctrl_m1 versus oligos_7nt_test_vs_ctrl_m4; m=6/7; ncol2=19; w=0; offset=1; strand=D; shift=2; score=0.605574; --wwwTCAATCAAAAAAArww--- ; cor=; Ncor= a 0 0 117 142 94 43 44 252 254 42 19 264 260 238 226 248 239 223 84 139 149 0 0 0 c 0 0 59 37 19 10 205 8 4 6 244 9 5 7 19 7 3 12 37 28 30 0 0 0 g 0 0 18 19 15 9 7 4 8 12 4 0 4 3 5 8 8 8 93 26 33 0 0 0 t 0 0 90 86 156 222 28 20 18 224 17 11 15 36 34 21 34 41 70 91 72 0 0 0

oligos_7nt_test_vs_ctrl_m5_shift3 (oligos_7nt_test_vs_ctrl_m5)
; oligos_6nt_test_vs_ctrl_m1 versus oligos_7nt_test_vs_ctrl_m5; m=7/7; ncol2=19; w=0; offset=2; strand=D; shift=3; score=0.59952; ---wAGCAAGCAAGCTAaywaw-- ; cor=; Ncor= a 0 0 0 87 108 18 16 120 145 11 7 117 144 12 5 34 137 99 32 58 97 69 0 0 c 0 0 0 9 8 8 128 0 2 4 137 3 2 4 131 7 6 9 46 32 11 15 0 0 g 0 0 0 8 15 118 2 3 1 130 6 1 3 132 7 3 3 30 37 9 18 24 0 0 t 0 0 0 52 25 12 10 33 8 11 6 35 7 8 13 112 10 18 41 57 30 48 0 0

One-to-n matrix alignment; reference matrix: oligos_7nt_test_vs_ctrl_m3_shift3 ; 8 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_test_vs_ctrl_m3_shift3 (oligos_7nt_test_vs_ctrl_m3)
; oligos_7nt_test_vs_ctrl_m3; m=0 (reference); ncol1=21; shift=3; ncol=24; ---wwaAAgCAAgCAAAAAAAdww ; Alignment reference a 0 0 0 110 100 130 184 191 46 25 192 186 52 19 182 182 177 143 181 191 156 62 118 117 c 0 0 0 19 29 39 5 3 5 162 4 2 4 175 2 7 4 31 5 4 11 35 16 17 g 0 0 0 21 24 14 8 1 138 11 3 5 137 2 3 9 18 9 8 5 18 59 15 21 t 0 0 0 60 57 27 13 15 21 12 11 17 17 14 23 12 11 27 16 10 25 54 61 55

oligos_7nt_test_vs_ctrl_m3_shift3 (oligos_7nt_test_vs_ctrl_m3)
; oligos_7nt_test_vs_ctrl_m3 versus oligos_7nt_test_vs_ctrl_m3; m=1/7; ncol2=21; w=0; offset=0; strand=D; shift=3; score= 1; ---wwaAAgCAAgCAAAAAAAdww ; cor=; Ncor= a 0 0 0 110 100 130 184 191 46 25 192 186 52 19 182 182 177 143 181 191 156 62 118 117 c 0 0 0 19 29 39 5 3 5 162 4 2 4 175 2 7 4 31 5 4 11 35 16 17 g 0 0 0 21 24 14 8 1 138 11 3 5 137 2 3 9 18 9 8 5 18 59 15 21 t 0 0 0 60 57 27 13 15 21 12 11 17 17 14 23 12 11 27 16 10 25 54 61 55

oligos_7nt_test_vs_ctrl_m1_shift3 (oligos_7nt_test_vs_ctrl_m1)
; oligos_7nt_test_vs_ctrl_m3 versus oligos_7nt_test_vs_ctrl_m1; m=2/7; ncol2=24; w=0; offset=0; strand=D; shift=3; score=0.803973; ---awmAArCAArCAAACAAAmAA ; cor=; Ncor= a 0 0 0 174 118 104 216 233 77 34 235 243 99 24 238 238 202 28 235 242 219 125 217 221 c 0 0 0 20 24 89 4 7 12 198 2 1 9 194 1 7 4 194 2 4 6 80 7 13 g 0 0 0 20 45 13 11 4 139 5 3 5 128 10 2 3 32 3 0 3 16 9 4 5 t 0 0 0 45 72 53 28 15 31 22 19 10 23 31 18 11 21 34 22 10 18 45 31 20

oligos_6nt_test_vs_ctrl_m2_shift0 (oligos_6nt_test_vs_ctrl_m2)
; oligos_7nt_test_vs_ctrl_m3 versus oligos_6nt_test_vs_ctrl_m2; m=3/7; ncol2=24; w=-3; offset=-3; strand=D; shift=0; score=0.767365; whaArCAArCAAACAAAaAAahww ; cor=; Ncor= a 109 73 151 225 65 34 223 225 72 23 219 224 184 32 213 223 206 145 205 193 125 106 140 130 c 19 81 11 7 7 192 3 2 8 187 0 3 2 184 5 4 6 58 4 9 19 62 23 20 g 42 20 41 2 143 4 3 7 140 9 3 3 35 5 2 3 17 6 5 10 49 13 17 24 t 75 71 42 11 30 15 16 11 25 26 23 15 24 24 25 15 16 36 31 33 52 64 65 71

oligos_6nt_test_vs_ctrl_m1_shift4 (oligos_6nt_test_vs_ctrl_m1)
; oligos_7nt_test_vs_ctrl_m3 versus oligos_6nt_test_vs_ctrl_m1; m=4/7; ncol2=23; w=0; offset=1; strand=D; shift=4; score=0.766823; ----awaAGcAAGCAAAaAAraAA ; cor=; Ncor= a 0 0 0 0 95 84 107 188 29 41 189 188 27 33 178 190 147 141 177 172 64 135 172 170 c 0 0 0 0 23 44 10 3 3 138 2 3 5 150 1 3 6 35 4 2 15 30 5 6 g 0 0 0 0 41 22 48 5 154 9 2 3 157 9 4 6 39 6 5 10 102 15 11 8 t 0 0 0 0 49 58 43 12 22 20 15 14 19 16 25 9 16 26 22 24 27 28 20 24

oligos_7nt_test_vs_ctrl_m4_shift5 (oligos_7nt_test_vs_ctrl_m4)
; oligos_7nt_test_vs_ctrl_m3 versus oligos_7nt_test_vs_ctrl_m4; m=5/7; ncol2=19; w=0; offset=2; strand=D; shift=5; score=0.730924; -----wwwTCAATCAAAAAAArww ; cor=; Ncor= a 0 0 0 0 0 117 142 94 43 44 252 254 42 19 264 260 238 226 248 239 223 84 139 149 c 0 0 0 0 0 59 37 19 10 205 8 4 6 244 9 5 7 19 7 3 12 37 28 30 g 0 0 0 0 0 18 19 15 9 7 4 8 12 4 0 4 3 5 8 8 8 93 26 33 t 0 0 0 0 0 90 86 156 222 28 20 18 224 17 11 15 36 34 21 34 41 70 91 72

oligos_6nt_test_vs_ctrl_m4_shift3 (oligos_6nt_test_vs_ctrl_m4)
; oligos_7nt_test_vs_ctrl_m3 versus oligos_6nt_test_vs_ctrl_m4; m=6/7; ncol2=20; w=0; offset=0; strand=D; shift=3; score=0.693398; ---wwAAATCAAAAAAgAAArww- ; cor=; Ncor= a 0 0 0 169 169 308 327 347 82 56 374 368 336 348 367 326 80 318 321 338 101 190 209 0 c 0 0 0 40 59 25 24 11 14 294 5 9 10 18 4 9 24 25 11 11 28 60 34 0 g 0 0 0 55 47 12 14 10 28 14 1 11 14 11 4 21 212 15 24 20 178 35 47 0 t 0 0 0 136 125 55 35 32 276 36 20 12 40 23 25 44 84 42 44 31 93 115 110 0

oligos_7nt_test_vs_ctrl_m5_shift2 (oligos_7nt_test_vs_ctrl_m5)
; oligos_7nt_test_vs_ctrl_m3 versus oligos_7nt_test_vs_ctrl_m5; m=7/7; ncol2=19; w=-1; offset=-1; strand=D; shift=2; score=0.617328; --wAGCAAGCAAGCTAaywaw--- ; cor=; Ncor= a 0 0 87 108 18 16 120 145 11 7 117 144 12 5 34 137 99 32 58 97 69 0 0 0 c 0 0 9 8 8 128 0 2 4 137 3 2 4 131 7 6 9 46 32 11 15 0 0 0 g 0 0 8 15 118 2 3 1 130 6 1 3 132 7 3 3 30 37 9 18 24 0 0 0 t 0 0 52 25 12 10 33 8 11 6 35 7 8 13 112 10 18 41 57 30 48 0 0 0

One-to-n matrix alignment; reference matrix: oligos_7nt_test_vs_ctrl_m2_shift6 ; 4 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_test_vs_ctrl_m2_shift6 (oligos_7nt_test_vs_ctrl_m2)
; oligos_7nt_test_vs_ctrl_m2; m=0 (reference); ncol1=13; shift=6; ncol=19; ------wwtTGAATGAAww ; Alignment reference a 0 0 0 0 0 0 277 297 169 30 64 636 615 31 50 626 642 234 244 c 0 0 0 0 0 0 46 51 20 11 9 10 15 13 16 10 8 55 53 g 0 0 0 0 0 0 115 59 31 18 569 7 17 12 575 14 13 84 135 t 0 0 0 0 0 0 243 274 461 622 39 28 34 625 40 31 18 308 249

oligos_7nt_test_vs_ctrl_m2_shift6 (oligos_7nt_test_vs_ctrl_m2)
; oligos_7nt_test_vs_ctrl_m2 versus oligos_7nt_test_vs_ctrl_m2; m=1/3; ncol2=13; w=0; offset=0; strand=D; shift=6; score= 1; ------wwtTGAATGAAww ; cor=; Ncor= a 0 0 0 0 0 0 277 297 169 30 64 636 615 31 50 626 642 234 244 c 0 0 0 0 0 0 46 51 20 11 9 10 15 13 16 10 8 55 53 g 0 0 0 0 0 0 115 59 31 18 569 7 17 12 575 14 13 84 135 t 0 0 0 0 0 0 243 274 461 622 39 28 34 625 40 31 18 308 249

oligos_6nt_test_vs_ctrl_m3_rc_shift6 (oligos_6nt_test_vs_ctrl_m3_rc)
; oligos_7nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m3_rc; m=2/3; ncol2=13; w=0; offset=0; strand=R; shift=6; score=0.951956; ------wwrTGAATGAAww ; cor=; Ncor= a 0 0 0 0 0 0 236 306 203 27 19 557 530 18 27 508 437 208 223 c 0 0 0 0 0 0 43 36 29 9 5 6 10 13 9 20 31 47 48 g 0 0 0 0 0 0 134 71 249 10 565 11 26 11 552 27 43 74 150 t 0 0 0 0 0 0 196 196 128 563 20 35 43 567 21 54 98 280 188

oligos_7nt_test_vs_ctrl_m4_rc_shift0 (oligos_7nt_test_vs_ctrl_m4_rc)
; oligos_7nt_test_vs_ctrl_m2 versus oligos_7nt_test_vs_ctrl_m4_rc; m=3/3; ncol2=19; w=-6; offset=-6; strand=R; shift=0; score=0.521118; wwyTTTTTTTGATTGAwww ; cor=; Ncor= a 72 91 70 41 34 21 34 36 15 11 17 224 18 20 28 222 156 86 90 c 33 26 93 8 8 8 5 3 4 0 4 12 8 4 7 9 15 19 18 g 30 28 37 12 3 7 19 7 5 9 244 6 4 8 205 10 19 37 59 t 149 139 84 223 239 248 226 238 260 264 19 42 254 252 44 43 94 142 117

One-to-n matrix alignment; reference matrix: oligos_7nt_test_vs_ctrl_m4_shift5 ; 8 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_test_vs_ctrl_m4_shift5 (oligos_7nt_test_vs_ctrl_m4)
; oligos_7nt_test_vs_ctrl_m4; m=0 (reference); ncol1=19; shift=5; ncol=24; -----wwwTCAATCAAAAAAArww ; Alignment reference a 0 0 0 0 0 117 142 94 43 44 252 254 42 19 264 260 238 226 248 239 223 84 139 149 c 0 0 0 0 0 59 37 19 10 205 8 4 6 244 9 5 7 19 7 3 12 37 28 30 g 0 0 0 0 0 18 19 15 9 7 4 8 12 4 0 4 3 5 8 8 8 93 26 33 t 0 0 0 0 0 90 86 156 222 28 20 18 224 17 11 15 36 34 21 34 41 70 91 72

oligos_7nt_test_vs_ctrl_m4_shift5 (oligos_7nt_test_vs_ctrl_m4)
; oligos_7nt_test_vs_ctrl_m4 versus oligos_7nt_test_vs_ctrl_m4; m=1/7; ncol2=19; w=0; offset=0; strand=D; shift=5; score= 1; -----wwwTCAATCAAAAAAArww ; cor=; Ncor= a 0 0 0 0 0 117 142 94 43 44 252 254 42 19 264 260 238 226 248 239 223 84 139 149 c 0 0 0 0 0 59 37 19 10 205 8 4 6 244 9 5 7 19 7 3 12 37 28 30 g 0 0 0 0 0 18 19 15 9 7 4 8 12 4 0 4 3 5 8 8 8 93 26 33 t 0 0 0 0 0 90 86 156 222 28 20 18 224 17 11 15 36 34 21 34 41 70 91 72

oligos_7nt_test_vs_ctrl_m3_shift3 (oligos_7nt_test_vs_ctrl_m3)
; oligos_7nt_test_vs_ctrl_m4 versus oligos_7nt_test_vs_ctrl_m3; m=2/7; ncol2=21; w=-2; offset=-2; strand=D; shift=3; score=0.730924; ---wwaAAgCAAgCAAAAAAAdww ; cor=; Ncor= a 0 0 0 110 100 130 184 191 46 25 192 186 52 19 182 182 177 143 181 191 156 62 118 117 c 0 0 0 19 29 39 5 3 5 162 4 2 4 175 2 7 4 31 5 4 11 35 16 17 g 0 0 0 21 24 14 8 1 138 11 3 5 137 2 3 9 18 9 8 5 18 59 15 21 t 0 0 0 60 57 27 13 15 21 12 11 17 17 14 23 12 11 27 16 10 25 54 61 55

oligos_6nt_test_vs_ctrl_m4_shift7 (oligos_6nt_test_vs_ctrl_m4)
; oligos_7nt_test_vs_ctrl_m4 versus oligos_6nt_test_vs_ctrl_m4; m=3/7; ncol2=20; w=0; offset=2; strand=D; shift=7; score=0.626798; -------wwAAATCAAAAAAgAAA ; cor=; Ncor= a 0 0 0 0 0 0 0 169 169 308 327 347 82 56 374 368 336 348 367 326 80 318 321 338 c 0 0 0 0 0 0 0 40 59 25 24 11 14 294 5 9 10 18 4 9 24 25 11 11 g 0 0 0 0 0 0 0 55 47 12 14 10 28 14 1 11 14 11 4 21 212 15 24 20 t 0 0 0 0 0 0 0 136 125 55 35 32 276 36 20 12 40 23 25 44 84 42 44 31

oligos_6nt_test_vs_ctrl_m1_shift4 (oligos_6nt_test_vs_ctrl_m1)
; oligos_7nt_test_vs_ctrl_m4 versus oligos_6nt_test_vs_ctrl_m1; m=4/7; ncol2=23; w=-1; offset=-1; strand=D; shift=4; score=0.605574; ----awaAGcAAGCAAAaAAraAA ; cor=; Ncor= a 0 0 0 0 95 84 107 188 29 41 189 188 27 33 178 190 147 141 177 172 64 135 172 170 c 0 0 0 0 23 44 10 3 3 138 2 3 5 150 1 3 6 35 4 2 15 30 5 6 g 0 0 0 0 41 22 48 5 154 9 2 3 157 9 4 6 39 6 5 10 102 15 11 8 t 0 0 0 0 49 58 43 12 22 20 15 14 19 16 25 9 16 26 22 24 27 28 20 24

oligos_6nt_test_vs_ctrl_m2_shift0 (oligos_6nt_test_vs_ctrl_m2)
; oligos_7nt_test_vs_ctrl_m4 versus oligos_6nt_test_vs_ctrl_m2; m=5/7; ncol2=24; w=-5; offset=-5; strand=D; shift=0; score=0.601828; whaArCAArCAAACAAAaAAahww ; cor=; Ncor= a 109 73 151 225 65 34 223 225 72 23 219 224 184 32 213 223 206 145 205 193 125 106 140 130 c 19 81 11 7 7 192 3 2 8 187 0 3 2 184 5 4 6 58 4 9 19 62 23 20 g 42 20 41 2 143 4 3 7 140 9 3 3 35 5 2 3 17 6 5 10 49 13 17 24 t 75 71 42 11 30 15 16 11 25 26 23 15 24 24 25 15 16 36 31 33 52 64 65 71

oligos_7nt_test_vs_ctrl_m1_shift3 (oligos_7nt_test_vs_ctrl_m1)
; oligos_7nt_test_vs_ctrl_m4 versus oligos_7nt_test_vs_ctrl_m1; m=6/7; ncol2=24; w=-2; offset=-2; strand=D; shift=3; score=0.593366; ---awmAArCAArCAAACAAAmAA ; cor=; Ncor= a 0 0 0 174 118 104 216 233 77 34 235 243 99 24 238 238 202 28 235 242 219 125 217 221 c 0 0 0 20 24 89 4 7 12 198 2 1 9 194 1 7 4 194 2 4 6 80 7 13 g 0 0 0 20 45 13 11 4 139 5 3 5 128 10 2 3 32 3 0 3 16 9 4 5 t 0 0 0 45 72 53 28 15 31 22 19 10 23 31 18 11 21 34 22 10 18 45 31 20

oligos_7nt_test_vs_ctrl_m2_rc_shift5 (oligos_7nt_test_vs_ctrl_m2_rc)
; oligos_7nt_test_vs_ctrl_m4 versus oligos_7nt_test_vs_ctrl_m2_rc; m=7/7; ncol2=13; w=0; offset=0; strand=R; shift=5; score=0.521118; -----wwTTCATTCAaww------ ; cor=; Ncor= a 0 0 0 0 0 249 308 18 31 40 625 34 28 39 622 461 274 243 0 0 0 0 0 0 c 0 0 0 0 0 135 84 13 14 575 12 17 7 569 18 31 59 115 0 0 0 0 0 0 g 0 0 0 0 0 53 55 8 10 16 13 15 10 9 11 20 51 46 0 0 0 0 0 0 t 0 0 0 0 0 244 234 642 626 50 31 615 636 64 30 169 297 277 0 0 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_6nt_test_vs_ctrl_m2_shift1 ; 8 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_test_vs_ctrl_m2_shift1 (oligos_6nt_test_vs_ctrl_m2)
; oligos_6nt_test_vs_ctrl_m2; m=0 (reference); ncol1=24; shift=1; ncol=25; -whaArCAArCAAACAAAaAAahww ; Alignment reference a 0 109 73 151 225 65 34 223 225 72 23 219 224 184 32 213 223 206 145 205 193 125 106 140 130 c 0 19 81 11 7 7 192 3 2 8 187 0 3 2 184 5 4 6 58 4 9 19 62 23 20 g 0 42 20 41 2 143 4 3 7 140 9 3 3 35 5 2 3 17 6 5 10 49 13 17 24 t 0 75 71 42 11 30 15 16 11 25 26 23 15 24 24 25 15 16 36 31 33 52 64 65 71

oligos_6nt_test_vs_ctrl_m2_shift1 (oligos_6nt_test_vs_ctrl_m2)
; oligos_6nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m2; m=1/7; ncol2=24; w=0; offset=0; strand=D; shift=1; score= 1; -whaArCAArCAAACAAAaAAahww ; cor=; Ncor= a 0 109 73 151 225 65 34 223 225 72 23 219 224 184 32 213 223 206 145 205 193 125 106 140 130 c 0 19 81 11 7 7 192 3 2 8 187 0 3 2 184 5 4 6 58 4 9 19 62 23 20 g 0 42 20 41 2 143 4 3 7 140 9 3 3 35 5 2 3 17 6 5 10 49 13 17 24 t 0 75 71 42 11 30 15 16 11 25 26 23 15 24 24 25 15 16 36 31 33 52 64 65 71

oligos_7nt_test_vs_ctrl_m1_shift0 (oligos_7nt_test_vs_ctrl_m1)
; oligos_6nt_test_vs_ctrl_m2 versus oligos_7nt_test_vs_ctrl_m1; m=2/7; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.908937; awmAArCAArCAAACAAAmAAAhw- ; cor=; Ncor= a 174 118 104 216 233 77 34 235 243 99 24 238 238 202 28 235 242 219 125 217 221 186 97 151 0 c 20 24 89 4 7 12 198 2 1 9 194 1 7 4 194 2 4 6 80 7 13 13 76 21 0 g 20 45 13 11 4 139 5 3 5 128 10 2 3 32 3 0 3 16 9 4 5 24 14 14 0 t 45 72 53 28 15 31 22 19 10 23 31 18 11 21 34 22 10 18 45 31 20 36 72 73 0

oligos_6nt_test_vs_ctrl_m1_shift1 (oligos_6nt_test_vs_ctrl_m1)
; oligos_6nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m1; m=3/7; ncol2=23; w=0; offset=0; strand=D; shift=1; score=0.868966; -awaAGcAAGCAAAaAAraAAraw- ; cor=; Ncor= a 0 95 84 107 188 29 41 189 188 27 33 178 190 147 141 177 172 64 135 172 170 64 96 117 0 c 0 23 44 10 3 3 138 2 3 5 150 1 3 6 35 4 2 15 30 5 6 16 42 9 0 g 0 41 22 48 5 154 9 2 3 157 9 4 6 39 6 5 10 102 15 11 8 89 22 26 0 t 0 49 58 43 12 22 20 15 14 19 16 25 9 16 26 22 24 27 28 20 24 39 48 56 0

oligos_7nt_test_vs_ctrl_m3_shift4 (oligos_7nt_test_vs_ctrl_m3)
; oligos_6nt_test_vs_ctrl_m2 versus oligos_7nt_test_vs_ctrl_m3; m=4/7; ncol2=21; w=0; offset=3; strand=D; shift=4; score=0.767365; ----wwaAAgCAAgCAAAAAAAdww ; cor=; Ncor= a 0 0 0 0 110 100 130 184 191 46 25 192 186 52 19 182 182 177 143 181 191 156 62 118 117 c 0 0 0 0 19 29 39 5 3 5 162 4 2 4 175 2 7 4 31 5 4 11 35 16 17 g 0 0 0 0 21 24 14 8 1 138 11 3 5 137 2 3 9 18 9 8 5 18 59 15 21 t 0 0 0 0 60 57 27 13 15 21 12 11 17 17 14 23 12 11 27 16 10 25 54 61 55

oligos_7nt_test_vs_ctrl_m5_shift3 (oligos_7nt_test_vs_ctrl_m5)
; oligos_6nt_test_vs_ctrl_m2 versus oligos_7nt_test_vs_ctrl_m5; m=5/7; ncol2=19; w=0; offset=2; strand=D; shift=3; score=0.63599; ---wAGCAAGCAAGCTAaywaw--- ; cor=; Ncor= a 0 0 0 87 108 18 16 120 145 11 7 117 144 12 5 34 137 99 32 58 97 69 0 0 0 c 0 0 0 9 8 8 128 0 2 4 137 3 2 4 131 7 6 9 46 32 11 15 0 0 0 g 0 0 0 8 15 118 2 3 1 130 6 1 3 132 7 3 3 30 37 9 18 24 0 0 0 t 0 0 0 52 25 12 10 33 8 11 6 35 7 8 13 112 10 18 41 57 30 48 0 0 0

oligos_7nt_test_vs_ctrl_m4_shift6 (oligos_7nt_test_vs_ctrl_m4)
; oligos_6nt_test_vs_ctrl_m2 versus oligos_7nt_test_vs_ctrl_m4; m=6/7; ncol2=19; w=0; offset=5; strand=D; shift=6; score=0.601828; ------wwwTCAATCAAAAAAArww ; cor=; Ncor= a 0 0 0 0 0 0 117 142 94 43 44 252 254 42 19 264 260 238 226 248 239 223 84 139 149 c 0 0 0 0 0 0 59 37 19 10 205 8 4 6 244 9 5 7 19 7 3 12 37 28 30 g 0 0 0 0 0 0 18 19 15 9 7 4 8 12 4 0 4 3 5 8 8 8 93 26 33 t 0 0 0 0 0 0 90 86 156 222 28 20 18 224 17 11 15 36 34 21 34 41 70 91 72

oligos_6nt_test_vs_ctrl_m4_shift4 (oligos_6nt_test_vs_ctrl_m4)
; oligos_6nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m4; m=7/7; ncol2=20; w=0; offset=3; strand=D; shift=4; score=0.596358; ----wwAAATCAAAAAAgAAArww- ; cor=; Ncor= a 0 0 0 0 169 169 308 327 347 82 56 374 368 336 348 367 326 80 318 321 338 101 190 209 0 c 0 0 0 0 40 59 25 24 11 14 294 5 9 10 18 4 9 24 25 11 11 28 60 34 0 g 0 0 0 0 55 47 12 14 10 28 14 1 11 14 11 4 21 212 15 24 20 178 35 47 0 t 0 0 0 0 136 125 55 35 32 276 36 20 12 40 23 25 44 84 42 44 31 93 115 110 0

One-to-n matrix alignment; reference matrix: oligos_7nt_test_vs_ctrl_m1_shift0 ; 8 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_test_vs_ctrl_m1_shift0 (oligos_7nt_test_vs_ctrl_m1)
; oligos_7nt_test_vs_ctrl_m1; m=0 (reference); ncol1=24; shift=0; ncol=24; awmAArCAArCAAACAAAmAAAhw ; Alignment reference a 174 118 104 216 233 77 34 235 243 99 24 238 238 202 28 235 242 219 125 217 221 186 97 151 c 20 24 89 4 7 12 198 2 1 9 194 1 7 4 194 2 4 6 80 7 13 13 76 21 g 20 45 13 11 4 139 5 3 5 128 10 2 3 32 3 0 3 16 9 4 5 24 14 14 t 45 72 53 28 15 31 22 19 10 23 31 18 11 21 34 22 10 18 45 31 20 36 72 73

oligos_7nt_test_vs_ctrl_m1_shift0 (oligos_7nt_test_vs_ctrl_m1)
; oligos_7nt_test_vs_ctrl_m1 versus oligos_7nt_test_vs_ctrl_m1; m=1/7; ncol2=24; w=0; offset=0; strand=D; shift=0; score= 1; awmAArCAArCAAACAAAmAAAhw ; cor=; Ncor= a 174 118 104 216 233 77 34 235 243 99 24 238 238 202 28 235 242 219 125 217 221 186 97 151 c 20 24 89 4 7 12 198 2 1 9 194 1 7 4 194 2 4 6 80 7 13 13 76 21 g 20 45 13 11 4 139 5 3 5 128 10 2 3 32 3 0 3 16 9 4 5 24 14 14 t 45 72 53 28 15 31 22 19 10 23 31 18 11 21 34 22 10 18 45 31 20 36 72 73

oligos_6nt_test_vs_ctrl_m2_shift1 (oligos_6nt_test_vs_ctrl_m2)
; oligos_7nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m2; m=2/7; ncol2=24; w=0; offset=1; strand=D; shift=1; score=0.908937; -whaArCAArCAAACAAAaAAahw ; cor=; Ncor= a 0 109 73 151 225 65 34 223 225 72 23 219 224 184 32 213 223 206 145 205 193 125 106 140 c 0 19 81 11 7 7 192 3 2 8 187 0 3 2 184 5 4 6 58 4 9 19 62 23 g 0 42 20 41 2 143 4 3 7 140 9 3 3 35 5 2 3 17 6 5 10 49 13 17 t 0 75 71 42 11 30 15 16 11 25 26 23 15 24 24 25 15 16 36 31 33 52 64 65

oligos_6nt_test_vs_ctrl_m1_shift1 (oligos_6nt_test_vs_ctrl_m1)
; oligos_7nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m1; m=3/7; ncol2=23; w=0; offset=1; strand=D; shift=1; score=0.842518; -awaAGcAAGCAAAaAAraAAraw ; cor=; Ncor= a 0 95 84 107 188 29 41 189 188 27 33 178 190 147 141 177 172 64 135 172 170 64 96 117 c 0 23 44 10 3 3 138 2 3 5 150 1 3 6 35 4 2 15 30 5 6 16 42 9 g 0 41 22 48 5 154 9 2 3 157 9 4 6 39 6 5 10 102 15 11 8 89 22 26 t 0 49 58 43 12 22 20 15 14 19 16 25 9 16 26 22 24 27 28 20 24 39 48 56

oligos_7nt_test_vs_ctrl_m3_shift0 (oligos_7nt_test_vs_ctrl_m3)
; oligos_7nt_test_vs_ctrl_m1 versus oligos_7nt_test_vs_ctrl_m3; m=4/7; ncol2=21; w=0; offset=0; strand=D; shift=0; score=0.803973; wwaAAgCAAgCAAAAAAAdww--- ; cor=; Ncor= a 110 100 130 184 191 46 25 192 186 52 19 182 182 177 143 181 191 156 62 118 117 0 0 0 c 19 29 39 5 3 5 162 4 2 4 175 2 7 4 31 5 4 11 35 16 17 0 0 0 g 21 24 14 8 1 138 11 3 5 137 2 3 9 18 9 8 5 18 59 15 21 0 0 0 t 60 57 27 13 15 21 12 11 17 17 14 23 12 11 27 16 10 25 54 61 55 0 0 0

oligos_7nt_test_vs_ctrl_m5_shift3 (oligos_7nt_test_vs_ctrl_m5)
; oligos_7nt_test_vs_ctrl_m1 versus oligos_7nt_test_vs_ctrl_m5; m=5/7; ncol2=19; w=0; offset=3; strand=D; shift=3; score=0.622486; ---wAGCAAGCAAGCTAaywaw-- ; cor=; Ncor= a 0 0 0 87 108 18 16 120 145 11 7 117 144 12 5 34 137 99 32 58 97 69 0 0 c 0 0 0 9 8 8 128 0 2 4 137 3 2 4 131 7 6 9 46 32 11 15 0 0 g 0 0 0 8 15 118 2 3 1 130 6 1 3 132 7 3 3 30 37 9 18 24 0 0 t 0 0 0 52 25 12 10 33 8 11 6 35 7 8 13 112 10 18 41 57 30 48 0 0

oligos_7nt_test_vs_ctrl_m4_shift2 (oligos_7nt_test_vs_ctrl_m4)
; oligos_7nt_test_vs_ctrl_m1 versus oligos_7nt_test_vs_ctrl_m4; m=6/7; ncol2=19; w=0; offset=2; strand=D; shift=2; score=0.593366; --wwwTCAATCAAAAAAArww--- ; cor=; Ncor= a 0 0 117 142 94 43 44 252 254 42 19 264 260 238 226 248 239 223 84 139 149 0 0 0 c 0 0 59 37 19 10 205 8 4 6 244 9 5 7 19 7 3 12 37 28 30 0 0 0 g 0 0 18 19 15 9 7 4 8 12 4 0 4 3 5 8 8 8 93 26 33 0 0 0 t 0 0 90 86 156 222 28 20 18 224 17 11 15 36 34 21 34 41 70 91 72 0 0 0

oligos_6nt_test_vs_ctrl_m4_shift4 (oligos_6nt_test_vs_ctrl_m4)
; oligos_7nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m4; m=7/7; ncol2=20; w=0; offset=4; strand=D; shift=4; score=0.588812; ----wwAAATCAAAAAAgAAArww ; cor=; Ncor= a 0 0 0 0 169 169 308 327 347 82 56 374 368 336 348 367 326 80 318 321 338 101 190 209 c 0 0 0 0 40 59 25 24 11 14 294 5 9 10 18 4 9 24 25 11 11 28 60 34 g 0 0 0 0 55 47 12 14 10 28 14 1 11 14 11 4 21 212 15 24 20 178 35 47 t 0 0 0 0 136 125 55 35 32 276 36 20 12 40 23 25 44 84 42 44 31 93 115 110

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_test_vs_ctrl_m4_shift4 (oligos_6nt_test_vs_ctrl_m4)				; oligos_6nt_test_vs_ctrl_m4; m=0 (reference); ncol1=20; shift=4; ncol=24; ----wwAAATCAAAAAAgAAArww ; Alignment reference a 0 0 0 0 169 169 308 327 347 82 56 374 368 336 348 367 326 80 318 321 338 101 190 209 c 0 0 0 0 40 59 25 24 11 14 294 5 9 10 18 4 9 24 25 11 11 28 60 34 g 0 0 0 0 55 47 12 14 10 28 14 1 11 14 11 4 21 212 15 24 20 178 35 47 t 0 0 0 0 136 125 55 35 32 276 36 20 12 40 23 25 44 84 42 44 31 93 115 110
oligos_6nt_test_vs_ctrl_m4_shift4 (oligos_6nt_test_vs_ctrl_m4)				; oligos_6nt_test_vs_ctrl_m4 versus oligos_6nt_test_vs_ctrl_m4; m=1/6; ncol2=20; w=0; offset=0; strand=D; shift=4; score= 1; ----wwAAATCAAAAAAgAAArww ; cor=; Ncor= a 0 0 0 0 169 169 308 327 347 82 56 374 368 336 348 367 326 80 318 321 338 101 190 209 c 0 0 0 0 40 59 25 24 11 14 294 5 9 10 18 4 9 24 25 11 11 28 60 34 g 0 0 0 0 55 47 12 14 10 28 14 1 11 14 11 4 21 212 15 24 20 178 35 47 t 0 0 0 0 136 125 55 35 32 276 36 20 12 40 23 25 44 84 42 44 31 93 115 110
oligos_6nt_test_vs_ctrl_m1_shift1 (oligos_6nt_test_vs_ctrl_m1)				; oligos_6nt_test_vs_ctrl_m4 versus oligos_6nt_test_vs_ctrl_m1; m=2/6; ncol2=23; w=-3; offset=-3; strand=D; shift=1; score=0.708502; -awaAGcAAGCAAAaAAraAAraw ; cor=; Ncor= a 0 95 84 107 188 29 41 189 188 27 33 178 190 147 141 177 172 64 135 172 170 64 96 117 c 0 23 44 10 3 3 138 2 3 5 150 1 3 6 35 4 2 15 30 5 6 16 42 9 g 0 41 22 48 5 154 9 2 3 157 9 4 6 39 6 5 10 102 15 11 8 89 22 26 t 0 49 58 43 12 22 20 15 14 19 16 25 9 16 26 22 24 27 28 20 24 39 48 56
oligos_7nt_test_vs_ctrl_m3_shift4 (oligos_7nt_test_vs_ctrl_m3)				; oligos_6nt_test_vs_ctrl_m4 versus oligos_7nt_test_vs_ctrl_m3; m=3/6; ncol2=21; w=0; offset=0; strand=D; shift=4; score=0.693398; ----wwaAAgCAAgCAAAAAAAdw ; cor=; Ncor= a 0 0 0 0 110 100 130 184 191 46 25 192 186 52 19 182 182 177 143 181 191 156 62 118 c 0 0 0 0 19 29 39 5 3 5 162 4 2 4 175 2 7 4 31 5 4 11 35 16 g 0 0 0 0 21 24 14 8 1 138 11 3 5 137 2 3 9 18 9 8 5 18 59 15 t 0 0 0 0 60 57 27 13 15 21 12 11 17 17 14 23 12 11 27 16 10 25 54 61
oligos_7nt_test_vs_ctrl_m4_shift2 (oligos_7nt_test_vs_ctrl_m4)				; oligos_6nt_test_vs_ctrl_m4 versus oligos_7nt_test_vs_ctrl_m4; m=4/6; ncol2=19; w=-2; offset=-2; strand=D; shift=2; score=0.626798; --wwwTCAATCAAAAAAArww--- ; cor=; Ncor= a 0 0 117 142 94 43 44 252 254 42 19 264 260 238 226 248 239 223 84 139 149 0 0 0 c 0 0 59 37 19 10 205 8 4 6 244 9 5 7 19 7 3 12 37 28 30 0 0 0 g 0 0 18 19 15 9 7 4 8 12 4 0 4 3 5 8 8 8 93 26 33 0 0 0 t 0 0 90 86 156 222 28 20 18 224 17 11 15 36 34 21 34 41 70 91 72 0 0 0
oligos_6nt_test_vs_ctrl_m2_shift1 (oligos_6nt_test_vs_ctrl_m2)				; oligos_6nt_test_vs_ctrl_m4 versus oligos_6nt_test_vs_ctrl_m2; m=5/6; ncol2=24; w=-3; offset=-3; strand=D; shift=1; score=0.596358; -whaArCAArCAAACAAAaAAahw ; cor=; Ncor= a 0 109 73 151 225 65 34 223 225 72 23 219 224 184 32 213 223 206 145 205 193 125 106 140 c 0 19 81 11 7 7 192 3 2 8 187 0 3 2 184 5 4 6 58 4 9 19 62 23 g 0 42 20 41 2 143 4 3 7 140 9 3 3 35 5 2 3 17 6 5 10 49 13 17 t 0 75 71 42 11 30 15 16 11 25 26 23 15 24 24 25 15 16 36 31 33 52 64 65
oligos_7nt_test_vs_ctrl_m1_shift0 (oligos_7nt_test_vs_ctrl_m1)				; oligos_6nt_test_vs_ctrl_m4 versus oligos_7nt_test_vs_ctrl_m1; m=6/6; ncol2=24; w=-4; offset=-4; strand=D; shift=0; score=0.588812; awmAArCAArCAAACAAAmAAAhw ; cor=; Ncor= a 174 118 104 216 233 77 34 235 243 99 24 238 238 202 28 235 242 219 125 217 221 186 97 151 c 20 24 89 4 7 12 198 2 1 9 194 1 7 4 194 2 4 6 80 7 13 13 76 21 g 20 45 13 11 4 139 5 3 5 128 10 2 3 32 3 0 3 16 9 4 5 24 14 14 t 45 72 53 28 15 31 22 19 10 23 31 18 11 21 34 22 10 18 45 31 20 36 72 73

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_test_vs_ctrl_m5_shift3 (oligos_7nt_test_vs_ctrl_m5)				; oligos_7nt_test_vs_ctrl_m5; m=0 (reference); ncol1=19; shift=3; ncol=22; ---wAGCAAGCAAGCTAaywaw ; Alignment reference a 0 0 0 87 108 18 16 120 145 11 7 117 144 12 5 34 137 99 32 58 97 69 c 0 0 0 9 8 8 128 0 2 4 137 3 2 4 131 7 6 9 46 32 11 15 g 0 0 0 8 15 118 2 3 1 130 6 1 3 132 7 3 3 30 37 9 18 24 t 0 0 0 52 25 12 10 33 8 11 6 35 7 8 13 112 10 18 41 57 30 48
oligos_7nt_test_vs_ctrl_m5_shift3 (oligos_7nt_test_vs_ctrl_m5)				; oligos_7nt_test_vs_ctrl_m5 versus oligos_7nt_test_vs_ctrl_m5; m=1/5; ncol2=19; w=0; offset=0; strand=D; shift=3; score= 1; ---wAGCAAGCAAGCTAaywaw ; cor=; Ncor= a 0 0 0 87 108 18 16 120 145 11 7 117 144 12 5 34 137 99 32 58 97 69 c 0 0 0 9 8 8 128 0 2 4 137 3 2 4 131 7 6 9 46 32 11 15 g 0 0 0 8 15 118 2 3 1 130 6 1 3 132 7 3 3 30 37 9 18 24 t 0 0 0 52 25 12 10 33 8 11 6 35 7 8 13 112 10 18 41 57 30 48
oligos_6nt_test_vs_ctrl_m2_shift1 (oligos_6nt_test_vs_ctrl_m2)				; oligos_7nt_test_vs_ctrl_m5 versus oligos_6nt_test_vs_ctrl_m2; m=2/5; ncol2=24; w=-2; offset=-2; strand=D; shift=1; score=0.63599; -whaArCAArCAAACAAAaAAa ; cor=; Ncor= a 0 109 73 151 225 65 34 223 225 72 23 219 224 184 32 213 223 206 145 205 193 125 c 0 19 81 11 7 7 192 3 2 8 187 0 3 2 184 5 4 6 58 4 9 19 g 0 42 20 41 2 143 4 3 7 140 9 3 3 35 5 2 3 17 6 5 10 49 t 0 75 71 42 11 30 15 16 11 25 26 23 15 24 24 25 15 16 36 31 33 52
oligos_7nt_test_vs_ctrl_m1_shift0 (oligos_7nt_test_vs_ctrl_m1)				; oligos_7nt_test_vs_ctrl_m5 versus oligos_7nt_test_vs_ctrl_m1; m=3/5; ncol2=24; w=-3; offset=-3; strand=D; shift=0; score=0.622486; awmAArCAArCAAACAAAmAAA ; cor=; Ncor= a 174 118 104 216 233 77 34 235 243 99 24 238 238 202 28 235 242 219 125 217 221 186 c 20 24 89 4 7 12 198 2 1 9 194 1 7 4 194 2 4 6 80 7 13 13 g 20 45 13 11 4 139 5 3 5 128 10 2 3 32 3 0 3 16 9 4 5 24 t 45 72 53 28 15 31 22 19 10 23 31 18 11 21 34 22 10 18 45 31 20 36
oligos_7nt_test_vs_ctrl_m3_shift4 (oligos_7nt_test_vs_ctrl_m3)				; oligos_7nt_test_vs_ctrl_m5 versus oligos_7nt_test_vs_ctrl_m3; m=4/5; ncol2=21; w=0; offset=1; strand=D; shift=4; score=0.617328; ----wwaAAgCAAgCAAAAAAA ; cor=; Ncor= a 0 0 0 0 110 100 130 184 191 46 25 192 186 52 19 182 182 177 143 181 191 156 c 0 0 0 0 19 29 39 5 3 5 162 4 2 4 175 2 7 4 31 5 4 11 g 0 0 0 0 21 24 14 8 1 138 11 3 5 137 2 3 9 18 9 8 5 18 t 0 0 0 0 60 57 27 13 15 21 12 11 17 17 14 23 12 11 27 16 10 25
oligos_6nt_test_vs_ctrl_m1_shift1 (oligos_6nt_test_vs_ctrl_m1)				; oligos_7nt_test_vs_ctrl_m5 versus oligos_6nt_test_vs_ctrl_m1; m=5/5; ncol2=23; w=-2; offset=-2; strand=D; shift=1; score=0.59952; -awaAGcAAGCAAAaAAraAAr ; cor=; Ncor= a 0 95 84 107 188 29 41 189 188 27 33 178 190 147 141 177 172 64 135 172 170 64 c 0 23 44 10 3 3 138 2 3 5 150 1 3 6 35 4 2 15 30 5 6 16 g 0 41 22 48 5 154 9 2 3 157 9 4 6 39 6 5 10 102 15 11 8 89 t 0 49 58 43 12 22 20 15 14 19 16 25 9 16 26 22 24 27 28 20 24 39

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_test_vs_ctrl_m1_shift1 (oligos_6nt_test_vs_ctrl_m1)				; oligos_6nt_test_vs_ctrl_m1; m=0 (reference); ncol1=23; shift=1; ncol=24; -awaAGcAAGCAAAaAAraAAraw ; Alignment reference a 0 95 84 107 188 29 41 189 188 27 33 178 190 147 141 177 172 64 135 172 170 64 96 117 c 0 23 44 10 3 3 138 2 3 5 150 1 3 6 35 4 2 15 30 5 6 16 42 9 g 0 41 22 48 5 154 9 2 3 157 9 4 6 39 6 5 10 102 15 11 8 89 22 26 t 0 49 58 43 12 22 20 15 14 19 16 25 9 16 26 22 24 27 28 20 24 39 48 56
oligos_6nt_test_vs_ctrl_m1_shift1 (oligos_6nt_test_vs_ctrl_m1)				; oligos_6nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m1; m=1/7; ncol2=23; w=0; offset=0; strand=D; shift=1; score= 1; -awaAGcAAGCAAAaAAraAAraw ; cor=; Ncor= a 0 95 84 107 188 29 41 189 188 27 33 178 190 147 141 177 172 64 135 172 170 64 96 117 c 0 23 44 10 3 3 138 2 3 5 150 1 3 6 35 4 2 15 30 5 6 16 42 9 g 0 41 22 48 5 154 9 2 3 157 9 4 6 39 6 5 10 102 15 11 8 89 22 26 t 0 49 58 43 12 22 20 15 14 19 16 25 9 16 26 22 24 27 28 20 24 39 48 56
oligos_6nt_test_vs_ctrl_m2_shift1 (oligos_6nt_test_vs_ctrl_m2)				; oligos_6nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m2; m=2/7; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.868966; -whaArCAArCAAACAAAaAAahw ; cor=; Ncor= a 0 109 73 151 225 65 34 223 225 72 23 219 224 184 32 213 223 206 145 205 193 125 106 140 c 0 19 81 11 7 7 192 3 2 8 187 0 3 2 184 5 4 6 58 4 9 19 62 23 g 0 42 20 41 2 143 4 3 7 140 9 3 3 35 5 2 3 17 6 5 10 49 13 17 t 0 75 71 42 11 30 15 16 11 25 26 23 15 24 24 25 15 16 36 31 33 52 64 65
oligos_7nt_test_vs_ctrl_m1_shift0 (oligos_7nt_test_vs_ctrl_m1)				; oligos_6nt_test_vs_ctrl_m1 versus oligos_7nt_test_vs_ctrl_m1; m=3/7; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.842518; awmAArCAArCAAACAAAmAAAhw ; cor=; Ncor= a 174 118 104 216 233 77 34 235 243 99 24 238 238 202 28 235 242 219 125 217 221 186 97 151 c 20 24 89 4 7 12 198 2 1 9 194 1 7 4 194 2 4 6 80 7 13 13 76 21 g 20 45 13 11 4 139 5 3 5 128 10 2 3 32 3 0 3 16 9 4 5 24 14 14 t 45 72 53 28 15 31 22 19 10 23 31 18 11 21 34 22 10 18 45 31 20 36 72 73
oligos_7nt_test_vs_ctrl_m3_shift0 (oligos_7nt_test_vs_ctrl_m3)				; oligos_6nt_test_vs_ctrl_m1 versus oligos_7nt_test_vs_ctrl_m3; m=4/7; ncol2=21; w=-1; offset=-1; strand=D; shift=0; score=0.766823; wwaAAgCAAgCAAAAAAAdww--- ; cor=; Ncor= a 110 100 130 184 191 46 25 192 186 52 19 182 182 177 143 181 191 156 62 118 117 0 0 0 c 19 29 39 5 3 5 162 4 2 4 175 2 7 4 31 5 4 11 35 16 17 0 0 0 g 21 24 14 8 1 138 11 3 5 137 2 3 9 18 9 8 5 18 59 15 21 0 0 0 t 60 57 27 13 15 21 12 11 17 17 14 23 12 11 27 16 10 25 54 61 55 0 0 0
oligos_6nt_test_vs_ctrl_m4_shift4 (oligos_6nt_test_vs_ctrl_m4)				; oligos_6nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m4; m=5/7; ncol2=20; w=0; offset=3; strand=D; shift=4; score=0.708502; ----wwAAATCAAAAAAgAAArww ; cor=; Ncor= a 0 0 0 0 169 169 308 327 347 82 56 374 368 336 348 367 326 80 318 321 338 101 190 209 c 0 0 0 0 40 59 25 24 11 14 294 5 9 10 18 4 9 24 25 11 11 28 60 34 g 0 0 0 0 55 47 12 14 10 28 14 1 11 14 11 4 21 212 15 24 20 178 35 47 t 0 0 0 0 136 125 55 35 32 276 36 20 12 40 23 25 44 84 42 44 31 93 115 110
oligos_7nt_test_vs_ctrl_m4_shift2 (oligos_7nt_test_vs_ctrl_m4)				; oligos_6nt_test_vs_ctrl_m1 versus oligos_7nt_test_vs_ctrl_m4; m=6/7; ncol2=19; w=0; offset=1; strand=D; shift=2; score=0.605574; --wwwTCAATCAAAAAAArww--- ; cor=; Ncor= a 0 0 117 142 94 43 44 252 254 42 19 264 260 238 226 248 239 223 84 139 149 0 0 0 c 0 0 59 37 19 10 205 8 4 6 244 9 5 7 19 7 3 12 37 28 30 0 0 0 g 0 0 18 19 15 9 7 4 8 12 4 0 4 3 5 8 8 8 93 26 33 0 0 0 t 0 0 90 86 156 222 28 20 18 224 17 11 15 36 34 21 34 41 70 91 72 0 0 0
oligos_7nt_test_vs_ctrl_m5_shift3 (oligos_7nt_test_vs_ctrl_m5)				; oligos_6nt_test_vs_ctrl_m1 versus oligos_7nt_test_vs_ctrl_m5; m=7/7; ncol2=19; w=0; offset=2; strand=D; shift=3; score=0.59952; ---wAGCAAGCAAGCTAaywaw-- ; cor=; Ncor= a 0 0 0 87 108 18 16 120 145 11 7 117 144 12 5 34 137 99 32 58 97 69 0 0 c 0 0 0 9 8 8 128 0 2 4 137 3 2 4 131 7 6 9 46 32 11 15 0 0 g 0 0 0 8 15 118 2 3 1 130 6 1 3 132 7 3 3 30 37 9 18 24 0 0 t 0 0 0 52 25 12 10 33 8 11 6 35 7 8 13 112 10 18 41 57 30 48 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_test_vs_ctrl_m3_shift3 (oligos_7nt_test_vs_ctrl_m3)				; oligos_7nt_test_vs_ctrl_m3; m=0 (reference); ncol1=21; shift=3; ncol=24; ---wwaAAgCAAgCAAAAAAAdww ; Alignment reference a 0 0 0 110 100 130 184 191 46 25 192 186 52 19 182 182 177 143 181 191 156 62 118 117 c 0 0 0 19 29 39 5 3 5 162 4 2 4 175 2 7 4 31 5 4 11 35 16 17 g 0 0 0 21 24 14 8 1 138 11 3 5 137 2 3 9 18 9 8 5 18 59 15 21 t 0 0 0 60 57 27 13 15 21 12 11 17 17 14 23 12 11 27 16 10 25 54 61 55
oligos_7nt_test_vs_ctrl_m3_shift3 (oligos_7nt_test_vs_ctrl_m3)				; oligos_7nt_test_vs_ctrl_m3 versus oligos_7nt_test_vs_ctrl_m3; m=1/7; ncol2=21; w=0; offset=0; strand=D; shift=3; score= 1; ---wwaAAgCAAgCAAAAAAAdww ; cor=; Ncor= a 0 0 0 110 100 130 184 191 46 25 192 186 52 19 182 182 177 143 181 191 156 62 118 117 c 0 0 0 19 29 39 5 3 5 162 4 2 4 175 2 7 4 31 5 4 11 35 16 17 g 0 0 0 21 24 14 8 1 138 11 3 5 137 2 3 9 18 9 8 5 18 59 15 21 t 0 0 0 60 57 27 13 15 21 12 11 17 17 14 23 12 11 27 16 10 25 54 61 55
oligos_7nt_test_vs_ctrl_m1_shift3 (oligos_7nt_test_vs_ctrl_m1)				; oligos_7nt_test_vs_ctrl_m3 versus oligos_7nt_test_vs_ctrl_m1; m=2/7; ncol2=24; w=0; offset=0; strand=D; shift=3; score=0.803973; ---awmAArCAArCAAACAAAmAA ; cor=; Ncor= a 0 0 0 174 118 104 216 233 77 34 235 243 99 24 238 238 202 28 235 242 219 125 217 221 c 0 0 0 20 24 89 4 7 12 198 2 1 9 194 1 7 4 194 2 4 6 80 7 13 g 0 0 0 20 45 13 11 4 139 5 3 5 128 10 2 3 32 3 0 3 16 9 4 5 t 0 0 0 45 72 53 28 15 31 22 19 10 23 31 18 11 21 34 22 10 18 45 31 20
oligos_6nt_test_vs_ctrl_m2_shift0 (oligos_6nt_test_vs_ctrl_m2)				; oligos_7nt_test_vs_ctrl_m3 versus oligos_6nt_test_vs_ctrl_m2; m=3/7; ncol2=24; w=-3; offset=-3; strand=D; shift=0; score=0.767365; whaArCAArCAAACAAAaAAahww ; cor=; Ncor= a 109 73 151 225 65 34 223 225 72 23 219 224 184 32 213 223 206 145 205 193 125 106 140 130 c 19 81 11 7 7 192 3 2 8 187 0 3 2 184 5 4 6 58 4 9 19 62 23 20 g 42 20 41 2 143 4 3 7 140 9 3 3 35 5 2 3 17 6 5 10 49 13 17 24 t 75 71 42 11 30 15 16 11 25 26 23 15 24 24 25 15 16 36 31 33 52 64 65 71
oligos_6nt_test_vs_ctrl_m1_shift4 (oligos_6nt_test_vs_ctrl_m1)				; oligos_7nt_test_vs_ctrl_m3 versus oligos_6nt_test_vs_ctrl_m1; m=4/7; ncol2=23; w=0; offset=1; strand=D; shift=4; score=0.766823; ----awaAGcAAGCAAAaAAraAA ; cor=; Ncor= a 0 0 0 0 95 84 107 188 29 41 189 188 27 33 178 190 147 141 177 172 64 135 172 170 c 0 0 0 0 23 44 10 3 3 138 2 3 5 150 1 3 6 35 4 2 15 30 5 6 g 0 0 0 0 41 22 48 5 154 9 2 3 157 9 4 6 39 6 5 10 102 15 11 8 t 0 0 0 0 49 58 43 12 22 20 15 14 19 16 25 9 16 26 22 24 27 28 20 24
oligos_7nt_test_vs_ctrl_m4_shift5 (oligos_7nt_test_vs_ctrl_m4)				; oligos_7nt_test_vs_ctrl_m3 versus oligos_7nt_test_vs_ctrl_m4; m=5/7; ncol2=19; w=0; offset=2; strand=D; shift=5; score=0.730924; -----wwwTCAATCAAAAAAArww ; cor=; Ncor= a 0 0 0 0 0 117 142 94 43 44 252 254 42 19 264 260 238 226 248 239 223 84 139 149 c 0 0 0 0 0 59 37 19 10 205 8 4 6 244 9 5 7 19 7 3 12 37 28 30 g 0 0 0 0 0 18 19 15 9 7 4 8 12 4 0 4 3 5 8 8 8 93 26 33 t 0 0 0 0 0 90 86 156 222 28 20 18 224 17 11 15 36 34 21 34 41 70 91 72
oligos_6nt_test_vs_ctrl_m4_shift3 (oligos_6nt_test_vs_ctrl_m4)				; oligos_7nt_test_vs_ctrl_m3 versus oligos_6nt_test_vs_ctrl_m4; m=6/7; ncol2=20; w=0; offset=0; strand=D; shift=3; score=0.693398; ---wwAAATCAAAAAAgAAArww- ; cor=; Ncor= a 0 0 0 169 169 308 327 347 82 56 374 368 336 348 367 326 80 318 321 338 101 190 209 0 c 0 0 0 40 59 25 24 11 14 294 5 9 10 18 4 9 24 25 11 11 28 60 34 0 g 0 0 0 55 47 12 14 10 28 14 1 11 14 11 4 21 212 15 24 20 178 35 47 0 t 0 0 0 136 125 55 35 32 276 36 20 12 40 23 25 44 84 42 44 31 93 115 110 0
oligos_7nt_test_vs_ctrl_m5_shift2 (oligos_7nt_test_vs_ctrl_m5)				; oligos_7nt_test_vs_ctrl_m3 versus oligos_7nt_test_vs_ctrl_m5; m=7/7; ncol2=19; w=-1; offset=-1; strand=D; shift=2; score=0.617328; --wAGCAAGCAAGCTAaywaw--- ; cor=; Ncor= a 0 0 87 108 18 16 120 145 11 7 117 144 12 5 34 137 99 32 58 97 69 0 0 0 c 0 0 9 8 8 128 0 2 4 137 3 2 4 131 7 6 9 46 32 11 15 0 0 0 g 0 0 8 15 118 2 3 1 130 6 1 3 132 7 3 3 30 37 9 18 24 0 0 0 t 0 0 52 25 12 10 33 8 11 6 35 7 8 13 112 10 18 41 57 30 48 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_test_vs_ctrl_m2_shift6 (oligos_7nt_test_vs_ctrl_m2)				; oligos_7nt_test_vs_ctrl_m2; m=0 (reference); ncol1=13; shift=6; ncol=19; ------wwtTGAATGAAww ; Alignment reference a 0 0 0 0 0 0 277 297 169 30 64 636 615 31 50 626 642 234 244 c 0 0 0 0 0 0 46 51 20 11 9 10 15 13 16 10 8 55 53 g 0 0 0 0 0 0 115 59 31 18 569 7 17 12 575 14 13 84 135 t 0 0 0 0 0 0 243 274 461 622 39 28 34 625 40 31 18 308 249
oligos_7nt_test_vs_ctrl_m2_shift6 (oligos_7nt_test_vs_ctrl_m2)				; oligos_7nt_test_vs_ctrl_m2 versus oligos_7nt_test_vs_ctrl_m2; m=1/3; ncol2=13; w=0; offset=0; strand=D; shift=6; score= 1; ------wwtTGAATGAAww ; cor=; Ncor= a 0 0 0 0 0 0 277 297 169 30 64 636 615 31 50 626 642 234 244 c 0 0 0 0 0 0 46 51 20 11 9 10 15 13 16 10 8 55 53 g 0 0 0 0 0 0 115 59 31 18 569 7 17 12 575 14 13 84 135 t 0 0 0 0 0 0 243 274 461 622 39 28 34 625 40 31 18 308 249
oligos_6nt_test_vs_ctrl_m3_rc_shift6 (oligos_6nt_test_vs_ctrl_m3_rc)				; oligos_7nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m3_rc; m=2/3; ncol2=13; w=0; offset=0; strand=R; shift=6; score=0.951956; ------wwrTGAATGAAww ; cor=; Ncor= a 0 0 0 0 0 0 236 306 203 27 19 557 530 18 27 508 437 208 223 c 0 0 0 0 0 0 43 36 29 9 5 6 10 13 9 20 31 47 48 g 0 0 0 0 0 0 134 71 249 10 565 11 26 11 552 27 43 74 150 t 0 0 0 0 0 0 196 196 128 563 20 35 43 567 21 54 98 280 188
oligos_7nt_test_vs_ctrl_m4_rc_shift0 (oligos_7nt_test_vs_ctrl_m4_rc)				; oligos_7nt_test_vs_ctrl_m2 versus oligos_7nt_test_vs_ctrl_m4_rc; m=3/3; ncol2=19; w=-6; offset=-6; strand=R; shift=0; score=0.521118; wwyTTTTTTTGATTGAwww ; cor=; Ncor= a 72 91 70 41 34 21 34 36 15 11 17 224 18 20 28 222 156 86 90 c 33 26 93 8 8 8 5 3 4 0 4 12 8 4 7 9 15 19 18 g 30 28 37 12 3 7 19 7 5 9 244 6 4 8 205 10 19 37 59 t 149 139 84 223 239 248 226 238 260 264 19 42 254 252 44 43 94 142 117

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_test_vs_ctrl_m4_shift5 (oligos_7nt_test_vs_ctrl_m4)				; oligos_7nt_test_vs_ctrl_m4; m=0 (reference); ncol1=19; shift=5; ncol=24; -----wwwTCAATCAAAAAAArww ; Alignment reference a 0 0 0 0 0 117 142 94 43 44 252 254 42 19 264 260 238 226 248 239 223 84 139 149 c 0 0 0 0 0 59 37 19 10 205 8 4 6 244 9 5 7 19 7 3 12 37 28 30 g 0 0 0 0 0 18 19 15 9 7 4 8 12 4 0 4 3 5 8 8 8 93 26 33 t 0 0 0 0 0 90 86 156 222 28 20 18 224 17 11 15 36 34 21 34 41 70 91 72
oligos_7nt_test_vs_ctrl_m4_shift5 (oligos_7nt_test_vs_ctrl_m4)				; oligos_7nt_test_vs_ctrl_m4 versus oligos_7nt_test_vs_ctrl_m4; m=1/7; ncol2=19; w=0; offset=0; strand=D; shift=5; score= 1; -----wwwTCAATCAAAAAAArww ; cor=; Ncor= a 0 0 0 0 0 117 142 94 43 44 252 254 42 19 264 260 238 226 248 239 223 84 139 149 c 0 0 0 0 0 59 37 19 10 205 8 4 6 244 9 5 7 19 7 3 12 37 28 30 g 0 0 0 0 0 18 19 15 9 7 4 8 12 4 0 4 3 5 8 8 8 93 26 33 t 0 0 0 0 0 90 86 156 222 28 20 18 224 17 11 15 36 34 21 34 41 70 91 72
oligos_7nt_test_vs_ctrl_m3_shift3 (oligos_7nt_test_vs_ctrl_m3)				; oligos_7nt_test_vs_ctrl_m4 versus oligos_7nt_test_vs_ctrl_m3; m=2/7; ncol2=21; w=-2; offset=-2; strand=D; shift=3; score=0.730924; ---wwaAAgCAAgCAAAAAAAdww ; cor=; Ncor= a 0 0 0 110 100 130 184 191 46 25 192 186 52 19 182 182 177 143 181 191 156 62 118 117 c 0 0 0 19 29 39 5 3 5 162 4 2 4 175 2 7 4 31 5 4 11 35 16 17 g 0 0 0 21 24 14 8 1 138 11 3 5 137 2 3 9 18 9 8 5 18 59 15 21 t 0 0 0 60 57 27 13 15 21 12 11 17 17 14 23 12 11 27 16 10 25 54 61 55
oligos_6nt_test_vs_ctrl_m4_shift7 (oligos_6nt_test_vs_ctrl_m4)				; oligos_7nt_test_vs_ctrl_m4 versus oligos_6nt_test_vs_ctrl_m4; m=3/7; ncol2=20; w=0; offset=2; strand=D; shift=7; score=0.626798; -------wwAAATCAAAAAAgAAA ; cor=; Ncor= a 0 0 0 0 0 0 0 169 169 308 327 347 82 56 374 368 336 348 367 326 80 318 321 338 c 0 0 0 0 0 0 0 40 59 25 24 11 14 294 5 9 10 18 4 9 24 25 11 11 g 0 0 0 0 0 0 0 55 47 12 14 10 28 14 1 11 14 11 4 21 212 15 24 20 t 0 0 0 0 0 0 0 136 125 55 35 32 276 36 20 12 40 23 25 44 84 42 44 31
oligos_6nt_test_vs_ctrl_m1_shift4 (oligos_6nt_test_vs_ctrl_m1)				; oligos_7nt_test_vs_ctrl_m4 versus oligos_6nt_test_vs_ctrl_m1; m=4/7; ncol2=23; w=-1; offset=-1; strand=D; shift=4; score=0.605574; ----awaAGcAAGCAAAaAAraAA ; cor=; Ncor= a 0 0 0 0 95 84 107 188 29 41 189 188 27 33 178 190 147 141 177 172 64 135 172 170 c 0 0 0 0 23 44 10 3 3 138 2 3 5 150 1 3 6 35 4 2 15 30 5 6 g 0 0 0 0 41 22 48 5 154 9 2 3 157 9 4 6 39 6 5 10 102 15 11 8 t 0 0 0 0 49 58 43 12 22 20 15 14 19 16 25 9 16 26 22 24 27 28 20 24
oligos_6nt_test_vs_ctrl_m2_shift0 (oligos_6nt_test_vs_ctrl_m2)				; oligos_7nt_test_vs_ctrl_m4 versus oligos_6nt_test_vs_ctrl_m2; m=5/7; ncol2=24; w=-5; offset=-5; strand=D; shift=0; score=0.601828; whaArCAArCAAACAAAaAAahww ; cor=; Ncor= a 109 73 151 225 65 34 223 225 72 23 219 224 184 32 213 223 206 145 205 193 125 106 140 130 c 19 81 11 7 7 192 3 2 8 187 0 3 2 184 5 4 6 58 4 9 19 62 23 20 g 42 20 41 2 143 4 3 7 140 9 3 3 35 5 2 3 17 6 5 10 49 13 17 24 t 75 71 42 11 30 15 16 11 25 26 23 15 24 24 25 15 16 36 31 33 52 64 65 71
oligos_7nt_test_vs_ctrl_m1_shift3 (oligos_7nt_test_vs_ctrl_m1)				; oligos_7nt_test_vs_ctrl_m4 versus oligos_7nt_test_vs_ctrl_m1; m=6/7; ncol2=24; w=-2; offset=-2; strand=D; shift=3; score=0.593366; ---awmAArCAArCAAACAAAmAA ; cor=; Ncor= a 0 0 0 174 118 104 216 233 77 34 235 243 99 24 238 238 202 28 235 242 219 125 217 221 c 0 0 0 20 24 89 4 7 12 198 2 1 9 194 1 7 4 194 2 4 6 80 7 13 g 0 0 0 20 45 13 11 4 139 5 3 5 128 10 2 3 32 3 0 3 16 9 4 5 t 0 0 0 45 72 53 28 15 31 22 19 10 23 31 18 11 21 34 22 10 18 45 31 20
oligos_7nt_test_vs_ctrl_m2_rc_shift5 (oligos_7nt_test_vs_ctrl_m2_rc)				; oligos_7nt_test_vs_ctrl_m4 versus oligos_7nt_test_vs_ctrl_m2_rc; m=7/7; ncol2=13; w=0; offset=0; strand=R; shift=5; score=0.521118; -----wwTTCATTCAaww------ ; cor=; Ncor= a 0 0 0 0 0 249 308 18 31 40 625 34 28 39 622 461 274 243 0 0 0 0 0 0 c 0 0 0 0 0 135 84 13 14 575 12 17 7 569 18 31 59 115 0 0 0 0 0 0 g 0 0 0 0 0 53 55 8 10 16 13 15 10 9 11 20 51 46 0 0 0 0 0 0 t 0 0 0 0 0 244 234 642 626 50 31 615 636 64 30 169 297 277 0 0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_test_vs_ctrl_m2_shift1 (oligos_6nt_test_vs_ctrl_m2)				; oligos_6nt_test_vs_ctrl_m2; m=0 (reference); ncol1=24; shift=1; ncol=25; -whaArCAArCAAACAAAaAAahww ; Alignment reference a 0 109 73 151 225 65 34 223 225 72 23 219 224 184 32 213 223 206 145 205 193 125 106 140 130 c 0 19 81 11 7 7 192 3 2 8 187 0 3 2 184 5 4 6 58 4 9 19 62 23 20 g 0 42 20 41 2 143 4 3 7 140 9 3 3 35 5 2 3 17 6 5 10 49 13 17 24 t 0 75 71 42 11 30 15 16 11 25 26 23 15 24 24 25 15 16 36 31 33 52 64 65 71
oligos_6nt_test_vs_ctrl_m2_shift1 (oligos_6nt_test_vs_ctrl_m2)				; oligos_6nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m2; m=1/7; ncol2=24; w=0; offset=0; strand=D; shift=1; score= 1; -whaArCAArCAAACAAAaAAahww ; cor=; Ncor= a 0 109 73 151 225 65 34 223 225 72 23 219 224 184 32 213 223 206 145 205 193 125 106 140 130 c 0 19 81 11 7 7 192 3 2 8 187 0 3 2 184 5 4 6 58 4 9 19 62 23 20 g 0 42 20 41 2 143 4 3 7 140 9 3 3 35 5 2 3 17 6 5 10 49 13 17 24 t 0 75 71 42 11 30 15 16 11 25 26 23 15 24 24 25 15 16 36 31 33 52 64 65 71
oligos_7nt_test_vs_ctrl_m1_shift0 (oligos_7nt_test_vs_ctrl_m1)				; oligos_6nt_test_vs_ctrl_m2 versus oligos_7nt_test_vs_ctrl_m1; m=2/7; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.908937; awmAArCAArCAAACAAAmAAAhw- ; cor=; Ncor= a 174 118 104 216 233 77 34 235 243 99 24 238 238 202 28 235 242 219 125 217 221 186 97 151 0 c 20 24 89 4 7 12 198 2 1 9 194 1 7 4 194 2 4 6 80 7 13 13 76 21 0 g 20 45 13 11 4 139 5 3 5 128 10 2 3 32 3 0 3 16 9 4 5 24 14 14 0 t 45 72 53 28 15 31 22 19 10 23 31 18 11 21 34 22 10 18 45 31 20 36 72 73 0
oligos_6nt_test_vs_ctrl_m1_shift1 (oligos_6nt_test_vs_ctrl_m1)				; oligos_6nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m1; m=3/7; ncol2=23; w=0; offset=0; strand=D; shift=1; score=0.868966; -awaAGcAAGCAAAaAAraAAraw- ; cor=; Ncor= a 0 95 84 107 188 29 41 189 188 27 33 178 190 147 141 177 172 64 135 172 170 64 96 117 0 c 0 23 44 10 3 3 138 2 3 5 150 1 3 6 35 4 2 15 30 5 6 16 42 9 0 g 0 41 22 48 5 154 9 2 3 157 9 4 6 39 6 5 10 102 15 11 8 89 22 26 0 t 0 49 58 43 12 22 20 15 14 19 16 25 9 16 26 22 24 27 28 20 24 39 48 56 0
oligos_7nt_test_vs_ctrl_m3_shift4 (oligos_7nt_test_vs_ctrl_m3)				; oligos_6nt_test_vs_ctrl_m2 versus oligos_7nt_test_vs_ctrl_m3; m=4/7; ncol2=21; w=0; offset=3; strand=D; shift=4; score=0.767365; ----wwaAAgCAAgCAAAAAAAdww ; cor=; Ncor= a 0 0 0 0 110 100 130 184 191 46 25 192 186 52 19 182 182 177 143 181 191 156 62 118 117 c 0 0 0 0 19 29 39 5 3 5 162 4 2 4 175 2 7 4 31 5 4 11 35 16 17 g 0 0 0 0 21 24 14 8 1 138 11 3 5 137 2 3 9 18 9 8 5 18 59 15 21 t 0 0 0 0 60 57 27 13 15 21 12 11 17 17 14 23 12 11 27 16 10 25 54 61 55
oligos_7nt_test_vs_ctrl_m5_shift3 (oligos_7nt_test_vs_ctrl_m5)				; oligos_6nt_test_vs_ctrl_m2 versus oligos_7nt_test_vs_ctrl_m5; m=5/7; ncol2=19; w=0; offset=2; strand=D; shift=3; score=0.63599; ---wAGCAAGCAAGCTAaywaw--- ; cor=; Ncor= a 0 0 0 87 108 18 16 120 145 11 7 117 144 12 5 34 137 99 32 58 97 69 0 0 0 c 0 0 0 9 8 8 128 0 2 4 137 3 2 4 131 7 6 9 46 32 11 15 0 0 0 g 0 0 0 8 15 118 2 3 1 130 6 1 3 132 7 3 3 30 37 9 18 24 0 0 0 t 0 0 0 52 25 12 10 33 8 11 6 35 7 8 13 112 10 18 41 57 30 48 0 0 0
oligos_7nt_test_vs_ctrl_m4_shift6 (oligos_7nt_test_vs_ctrl_m4)				; oligos_6nt_test_vs_ctrl_m2 versus oligos_7nt_test_vs_ctrl_m4; m=6/7; ncol2=19; w=0; offset=5; strand=D; shift=6; score=0.601828; ------wwwTCAATCAAAAAAArww ; cor=; Ncor= a 0 0 0 0 0 0 117 142 94 43 44 252 254 42 19 264 260 238 226 248 239 223 84 139 149 c 0 0 0 0 0 0 59 37 19 10 205 8 4 6 244 9 5 7 19 7 3 12 37 28 30 g 0 0 0 0 0 0 18 19 15 9 7 4 8 12 4 0 4 3 5 8 8 8 93 26 33 t 0 0 0 0 0 0 90 86 156 222 28 20 18 224 17 11 15 36 34 21 34 41 70 91 72
oligos_6nt_test_vs_ctrl_m4_shift4 (oligos_6nt_test_vs_ctrl_m4)				; oligos_6nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m4; m=7/7; ncol2=20; w=0; offset=3; strand=D; shift=4; score=0.596358; ----wwAAATCAAAAAAgAAArww- ; cor=; Ncor= a 0 0 0 0 169 169 308 327 347 82 56 374 368 336 348 367 326 80 318 321 338 101 190 209 0 c 0 0 0 0 40 59 25 24 11 14 294 5 9 10 18 4 9 24 25 11 11 28 60 34 0 g 0 0 0 0 55 47 12 14 10 28 14 1 11 14 11 4 21 212 15 24 20 178 35 47 0 t 0 0 0 0 136 125 55 35 32 276 36 20 12 40 23 25 44 84 42 44 31 93 115 110 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_test_vs_ctrl_m1_shift0 (oligos_7nt_test_vs_ctrl_m1)				; oligos_7nt_test_vs_ctrl_m1; m=0 (reference); ncol1=24; shift=0; ncol=24; awmAArCAArCAAACAAAmAAAhw ; Alignment reference a 174 118 104 216 233 77 34 235 243 99 24 238 238 202 28 235 242 219 125 217 221 186 97 151 c 20 24 89 4 7 12 198 2 1 9 194 1 7 4 194 2 4 6 80 7 13 13 76 21 g 20 45 13 11 4 139 5 3 5 128 10 2 3 32 3 0 3 16 9 4 5 24 14 14 t 45 72 53 28 15 31 22 19 10 23 31 18 11 21 34 22 10 18 45 31 20 36 72 73
oligos_7nt_test_vs_ctrl_m1_shift0 (oligos_7nt_test_vs_ctrl_m1)				; oligos_7nt_test_vs_ctrl_m1 versus oligos_7nt_test_vs_ctrl_m1; m=1/7; ncol2=24; w=0; offset=0; strand=D; shift=0; score= 1; awmAArCAArCAAACAAAmAAAhw ; cor=; Ncor= a 174 118 104 216 233 77 34 235 243 99 24 238 238 202 28 235 242 219 125 217 221 186 97 151 c 20 24 89 4 7 12 198 2 1 9 194 1 7 4 194 2 4 6 80 7 13 13 76 21 g 20 45 13 11 4 139 5 3 5 128 10 2 3 32 3 0 3 16 9 4 5 24 14 14 t 45 72 53 28 15 31 22 19 10 23 31 18 11 21 34 22 10 18 45 31 20 36 72 73
oligos_6nt_test_vs_ctrl_m2_shift1 (oligos_6nt_test_vs_ctrl_m2)				; oligos_7nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m2; m=2/7; ncol2=24; w=0; offset=1; strand=D; shift=1; score=0.908937; -whaArCAArCAAACAAAaAAahw ; cor=; Ncor= a 0 109 73 151 225 65 34 223 225 72 23 219 224 184 32 213 223 206 145 205 193 125 106 140 c 0 19 81 11 7 7 192 3 2 8 187 0 3 2 184 5 4 6 58 4 9 19 62 23 g 0 42 20 41 2 143 4 3 7 140 9 3 3 35 5 2 3 17 6 5 10 49 13 17 t 0 75 71 42 11 30 15 16 11 25 26 23 15 24 24 25 15 16 36 31 33 52 64 65
oligos_6nt_test_vs_ctrl_m1_shift1 (oligos_6nt_test_vs_ctrl_m1)				; oligos_7nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m1; m=3/7; ncol2=23; w=0; offset=1; strand=D; shift=1; score=0.842518; -awaAGcAAGCAAAaAAraAAraw ; cor=; Ncor= a 0 95 84 107 188 29 41 189 188 27 33 178 190 147 141 177 172 64 135 172 170 64 96 117 c 0 23 44 10 3 3 138 2 3 5 150 1 3 6 35 4 2 15 30 5 6 16 42 9 g 0 41 22 48 5 154 9 2 3 157 9 4 6 39 6 5 10 102 15 11 8 89 22 26 t 0 49 58 43 12 22 20 15 14 19 16 25 9 16 26 22 24 27 28 20 24 39 48 56
oligos_7nt_test_vs_ctrl_m3_shift0 (oligos_7nt_test_vs_ctrl_m3)				; oligos_7nt_test_vs_ctrl_m1 versus oligos_7nt_test_vs_ctrl_m3; m=4/7; ncol2=21; w=0; offset=0; strand=D; shift=0; score=0.803973; wwaAAgCAAgCAAAAAAAdww--- ; cor=; Ncor= a 110 100 130 184 191 46 25 192 186 52 19 182 182 177 143 181 191 156 62 118 117 0 0 0 c 19 29 39 5 3 5 162 4 2 4 175 2 7 4 31 5 4 11 35 16 17 0 0 0 g 21 24 14 8 1 138 11 3 5 137 2 3 9 18 9 8 5 18 59 15 21 0 0 0 t 60 57 27 13 15 21 12 11 17 17 14 23 12 11 27 16 10 25 54 61 55 0 0 0
oligos_7nt_test_vs_ctrl_m5_shift3 (oligos_7nt_test_vs_ctrl_m5)				; oligos_7nt_test_vs_ctrl_m1 versus oligos_7nt_test_vs_ctrl_m5; m=5/7; ncol2=19; w=0; offset=3; strand=D; shift=3; score=0.622486; ---wAGCAAGCAAGCTAaywaw-- ; cor=; Ncor= a 0 0 0 87 108 18 16 120 145 11 7 117 144 12 5 34 137 99 32 58 97 69 0 0 c 0 0 0 9 8 8 128 0 2 4 137 3 2 4 131 7 6 9 46 32 11 15 0 0 g 0 0 0 8 15 118 2 3 1 130 6 1 3 132 7 3 3 30 37 9 18 24 0 0 t 0 0 0 52 25 12 10 33 8 11 6 35 7 8 13 112 10 18 41 57 30 48 0 0
oligos_7nt_test_vs_ctrl_m4_shift2 (oligos_7nt_test_vs_ctrl_m4)				; oligos_7nt_test_vs_ctrl_m1 versus oligos_7nt_test_vs_ctrl_m4; m=6/7; ncol2=19; w=0; offset=2; strand=D; shift=2; score=0.593366; --wwwTCAATCAAAAAAArww--- ; cor=; Ncor= a 0 0 117 142 94 43 44 252 254 42 19 264 260 238 226 248 239 223 84 139 149 0 0 0 c 0 0 59 37 19 10 205 8 4 6 244 9 5 7 19 7 3 12 37 28 30 0 0 0 g 0 0 18 19 15 9 7 4 8 12 4 0 4 3 5 8 8 8 93 26 33 0 0 0 t 0 0 90 86 156 222 28 20 18 224 17 11 15 36 34 21 34 41 70 91 72 0 0 0
oligos_6nt_test_vs_ctrl_m4_shift4 (oligos_6nt_test_vs_ctrl_m4)				; oligos_7nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m4; m=7/7; ncol2=20; w=0; offset=4; strand=D; shift=4; score=0.588812; ----wwAAATCAAAAAAgAAArww ; cor=; Ncor= a 0 0 0 0 169 169 308 327 347 82 56 374 368 336 348 367 326 80 318 321 338 101 190 209 c 0 0 0 0 40 59 25 24 11 14 294 5 9 10 18 4 9 24 25 11 11 28 60 34 g 0 0 0 0 55 47 12 14 10 28 14 1 11 14 11 4 21 212 15 24 20 178 35 47 t 0 0 0 0 136 125 55 35 32 276 36 20 12 40 23 25 44 84 42 44 31 93 115 110