peak-motifs score10_intersect

Sequence composition (test sequences)

Nb of peaks: 681
Total seq. size: 1590 kb
Min length: 9 bp
Mean length: 2335.36 bp
Max length: 4000 bp [ seq: converted purged ]
[ lengths: list distrib graph ]

Nucleotide composition profiles

Transition frequencies
Position profiles

[ 1nt: freq transitions ]
[ bg model: Inclusive format ]
[ profile: table html(individual) ]

Dinucleotide composition profiles

Transition frequencies
Position profiles

[ 2nt: freq transitions ]
[ bg model: Inclusive format ]
[ profile: table html(individual) ]

Sequence composition (ctrl sequences)

Nb of peaks: 681
Total seq. size: 1590 kb
Min length: 9 bp
Mean length: 2335.36 bp
Max length: 4000 bp [ seq: converted purged ]
[ lengths: list distrib graph ]

Nucleotide composition profiles

Transition frequencies
Position profiles

[ 1nt: freq transitions ]
[ bg model: Inclusive format ]
[ profile: table html(individual) ]

Dinucleotide composition profiles

Transition frequencies
Position profiles

[ 2nt: freq transitions ]
[ bg model: Inclusive format ]
[ profile: table html(individual) ]

Motif discovery

Motif 1 oligos_6nt_test_vs_ctrl_m1

k-mer sig=49.91; evalue=1.2e-50

aaaCaaaCaaamaarma

TKYTTKTTTGTTTGTTT

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 432 (63.44%)
Max nb of predicted sites per peak: 25
(chr_022_102_634752_638420)
Mean nb of predicted sites per peak: 3.52

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 2 oligos_6nt_test_vs_ctrl_m2

k-mer sig=43.89; evalue=1.3e-44

ttrattGattGatt

AATCAATCAATYAA

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 398 (58.44%)
Max nb of predicted sites per peak: 18
(chr_112_381_376180_380790)
Mean nb of predicted sites per peak: 2.76

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 3 oligos_6nt_test_vs_ctrl_m3

k-mer sig=49.91; evalue=1.2e-50

caaGCaaGCaaamaaGma

TKCTTKTTTGCTTGCTTG

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 410 (60.21%)
Max nb of predicted sites per peak: 17
(chr_137_526_8572_12086)
Mean nb of predicted sites per peak: 3.10

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 4 oligos_6nt_test_vs_ctrl_m4

k-mer sig=23.92; evalue=1.2e-24

tgtGtGaGtGaatGart

AYTCATTCACTCACACA

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 380 (55.80%)
Max nb of predicted sites per peak: 15
(chr_137_525_4834_7883)
Mean nb of predicted sites per peak: 3.23

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 5 oligos_6nt_test_vs_ctrl_m5

k-mer sig=21.93; evalue=1.2e-22

cytttCCCCaCtyy

RRAGTGGGGAAARG

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 298 (43.76%)
Max nb of predicted sites per peak: 6
(chr_151_575_28045_32107)
Mean nb of predicted sites per peak: 1.73

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 6 oligos_7nt_test_vs_ctrl_m1

k-mer sig=55.63; evalue=2.3e-56

caaaCaaaCaaamaaasaa

TTSTTTKTTTGTTTGTTTG

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 437 (64.17%)
Max nb of predicted sites per peak: 30
(chr_022_102_634752_638420)
Mean nb of predicted sites per peak: 4.35

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 7 oligos_7nt_test_vs_ctrl_m2

k-mer sig=39.03; evalue=9.3e-40

cawtCaatCaatCtatc

GATAGATTGATTGAWTG

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 416 (61.09%)
Max nb of predicted sites per peak: 25
(chr_112_381_376180_380790)
Mean nb of predicted sites per peak: 3.85

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 8 oligos_7nt_test_vs_ctrl_m3

k-mer sig=36.15; evalue=7.1e-37

armaaGCaaGCaaamaaasaa

TTSTTTKTTTGCTTGCTTKYT

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 411 (60.35%)
Max nb of predicted sites per peak: 23
(chr_105_364_1978037_1981835)
Mean nb of predicted sites per peak: 3.80

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 9 oligos_7nt_test_vs_ctrl_m4

k-mer sig=28.43; evalue=3.7e-29

taGCtaGCtaGCta

TAGCTAGCTAGCTA

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 285 (41.85%)
Max nb of predicted sites per peak: 22
(chr_101_342_972_5523)
Mean nb of predicted sites per peak: 4.10

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 10 oligos_7nt_test_vs_ctrl_m5

k-mer sig=26.62; evalue=2.4e-27

cattCattCatty

RAATGAATGAATG

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 341 (50.07%)
Max nb of predicted sites per peak: 14
(chr_003_9_37268_41175)
Mean nb of predicted sites per peak: 2.72

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Predicted sites on test peaks (all motifs)

[tab]
[bed]

Word significance table
Word comparisons		[tab] [html] [heatmap]
Comparisons between discovered motifs
Discovered motifs versus discovered motifs		[ Discovered motif(s): tf ] [ table: html txt ] [ alignments (logo): html text ] [ clustering: html ] [ graph: gml (for CytoScape) ]

Log files
Parameters and files		[txt] [html]
Time log		[time table] [time log] [html]

Thomas-Chollier M, Herrmann C, Defrance M, Sand O, Thieffry D, van Helden J. (2012). RSAT peak-motifs: motif analysis in full-size ChIP-seq datasets. Nucleic Acids Res 40(4): e31.
Thomas-Chollier M, Darbo E, Herrmann C, Defrance M, Thieffry D, van Helden J. (2012). A complete workflow for the analysis of full-size ChIP-seq (and similar) data sets using peak-motifs. Nat Protoc 7(8): 1551-1568.

RSAT - peak-motifs result

Analysis: score10_intersect_peaks (18/05/2026 14:27)

Command

Sequence composition

Discovered motifs (by algorithm)

Discovered motifs (with motif comparison)

Motif locations (sites)

Motif comparisons

Logs and parameter files

Publications

Results