position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2026/05/27/peak-motifs.2026-05-27.215012_2026-05-27.215012_WiGkpW/data/sequences/peak-motifs_test_maxlen1200_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 1 -ci 20 -img_format png -title ld -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2026/05/27/peak-motifs.2026-05-27.215012_2026-05-27.215012_WiGkpW/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab Citation: van Helden, et al. (2000). Nucleic Acids Res 28, 1000-1010. Sequence file $RSAT/public_html/tmp/www-data/2026/05/27/peak-motifs.2026-05-27.215012_2026-05-27.215012_WiGkpW/data/sequences/peak-motifs_test_maxlen1200_purged_ml40_mis3.fasta Sequence format fasta Sequence type dna Output file $RSAT/public_html/tmp/www-data/2026/05/27/peak-motifs.2026-05-27.215012_2026-05-27.215012_WiGkpW/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab Oligo length 1 Occurrences counted on a single strands Conditions of applicability checked. Background model estimation: homogeneous repartition Sequence statistics: Nb of sequences 33 Sum of sequence lengths 18937 Min sequence length 0 Max sequence length 1088 Average sequence length 573 Possible positions 18937 Sequences: # length ID 1 939 FBgn0001248|Idh 2 893 FBgn0002719|Men 3 284 FBgn0010548|Aldh-III 4 431 FBgn0012034|AcCoAS 5 698 FBgn0012036|Aldh 6 699 FBgn0015623|Cpr 7 897 FBgn0020236|ATPCL 8 363 FBgn0025352|Mtpbeta 9 445 FBgn0025814|Mgstl 10 137 FBgn0028479|Mtpalpha 11 983 FBgn0028646|aralar1 12 230 FBgn0030607|dob 13 727 FBgn0030608|Lsd-2 14 423 FBgn0031069|Abcd3 15 456 FBgn0032265|CG18301 16 486 FBgn0033246|ACC 17 199 FBgn0033451|Marc 18 148 FBgn0035770|pst 19 706 FBgn0036449|bmm 20 906 FBgn0036821|CG3961 21 326 FBgn0037265|spartin 22 885 FBgn0037607|CG8036 23 486 FBgn0039156|CG6178 24 213 FBgn0039543|CROT 25 191 FBgn0039697|Etfb 26 518 FBgn0040064|yip2 27 231 FBgn0040336|Seipin 28 1088 FBgn0086687|Desat1 29 1082 FBgn0262782|Mdh1 30 974 FBgn0263120|Acsl 31 975 FBgn0264294|Cyt-b5 32 751 FBgn0283427|FASN1 33 167 FBgn0286783|Etf-QO Oligonucleotide statistics: Total occurrences 18896 Position interval parameters: Position interval 20 Number of windows 56 Total positions 18937 Degrees of freedom 55 K-mer clustering parameters: Number of clusters 0 Clustering method complete Position intervals: window [min,max] mid seq occ 1 -28 [-559,-540] -549.5 2 6 2 -27 [-539,-520] -529.5 2 40 3 -26 [-519,-500] -509.5 2 40 4 -25 [-499,-480] -489.5 5 68 5 -24 [-479,-460] -469.5 6 110 6 -23 [-459,-440] -449.5 10 153 7 -22 [-439,-420] -429.5 10 200 8 -21 [-419,-400] -409.5 10 200 9 -20 [-399,-380] -389.5 10 200 10 -19 [-379,-360] -369.5 12 220 11 -18 [-359,-340] -349.5 15 274 12 -17 [-339,-320] -329.5 15 300 13 -16 [-319,-300] -309.5 15 300 14 -15 [-299,-280] -289.5 15 300 15 -14 [-279,-260] -269.5 15 300 16 -13 [-259,-240] -249.5 18 328 17 -12 [-239,-220] -229.5 20 371 18 -11 [-219,-200] -209.5 22 428 19 -10 [-199,-180] -189.5 23 442 20 -9 [-179,-160] -169.5 24 464 21 -8 [-159,-140] -149.5 25 482 22 -7 [-139,-120] -129.5 25 500 23 -6 [-119,-100] -109.5 28 539 24 -5 [-99,-80] -89.5 31 600 25 -4 [-79,-60] -69.5 33 643 26 -3 [-59,-40] -49.5 33 660 27 -2 [-39,-20] -29.5 33 660 28 -1 [-19,0] -9.5 33 660 29 0 [1,20] 10.5 33 660 30 1 [21,40] 30.5 33 660 31 2 [41,60] 50.5 33 660 32 3 [61,80] 70.5 33 642 33 4 [81,100] 90.5 31 597 34 5 [101,120] 110.5 28 535 35 6 [121,140] 130.5 25 500 36 7 [141,160] 150.5 25 482 37 8 [161,180] 170.5 24 462 38 9 [181,200] 190.5 23 441 39 10 [201,220] 210.5 22 426 40 11 [221,240] 230.5 20 370 41 12 [241,260] 250.5 18 322 42 13 [261,280] 270.5 15 300 43 14 [281,300] 290.5 15 300 44 15 [301,320] 310.5 15 300 45 16 [321,340] 330.5 15 300 46 17 [341,360] 350.5 15 269 47 18 [361,380] 370.5 12 218 48 19 [381,400] 390.5 10 200 49 20 [401,420] 410.5 10 200 50 21 [421,440] 430.5 10 200 51 22 [441,460] 450.5 10 148 52 23 [461,480] 470.5 6 109 53 24 [481,500] 490.5 5 64 54 25 [501,520] 510.5 2 40 55 26 [521,540] 530.5 2 40 56 27 [541,560] 550.5 1 4 Column headers 1 seq pattern sequence 2 id pattern identifier 3 occ pattern occurrences 4 chi2 observed chi-square 5 df degrees of freedom 6 Pval P-value (probability for one word to be a false positive) 7 Eval E-value; expected number of false positives (Eval = Pval * nb_tests) 8 sig Significance (sig = -log10(Eval)) 9 rank rank of the pattern according to sorting criterion 10 -549.5 occurrences in window 1 [-559,-540] 11 -529.5 occurrences in window 2 [-539,-520] 12 -509.5 occurrences in window 3 [-519,-500] 13 -489.5 occurrences in window 4 [-499,-480] 14 -469.5 occurrences in window 5 [-479,-460] 15 -449.5 occurrences in window 6 [-459,-440] 16 -429.5 occurrences in window 7 [-439,-420] 17 -409.5 occurrences in window 8 [-419,-400] 18 -389.5 occurrences in window 9 [-399,-380] 19 -369.5 occurrences in window 10 [-379,-360] 20 -349.5 occurrences in window 11 [-359,-340] 21 -329.5 occurrences in window 12 [-339,-320] 22 -309.5 occurrences in window 13 [-319,-300] 23 -289.5 occurrences in window 14 [-299,-280] 24 -269.5 occurrences in window 15 [-279,-260] 25 -249.5 occurrences in window 16 [-259,-240] 26 -229.5 occurrences in window 17 [-239,-220] 27 -209.5 occurrences in window 18 [-219,-200] 28 -189.5 occurrences in window 19 [-199,-180] 29 -169.5 occurrences in window 20 [-179,-160] 30 -149.5 occurrences in window 21 [-159,-140] 31 -129.5 occurrences in window 22 [-139,-120] 32 -109.5 occurrences in window 23 [-119,-100] 33 -89.5 occurrences in window 24 [-99,-80] 34 -69.5 occurrences in window 25 [-79,-60] 35 -49.5 occurrences in window 26 [-59,-40] 36 -29.5 occurrences in window 27 [-39,-20] 37 -9.5 occurrences in window 28 [-19,0] 38 10.5 occurrences in window 29 [1,20] 39 30.5 occurrences in window 30 [21,40] 40 50.5 occurrences in window 31 [41,60] 41 70.5 occurrences in window 32 [61,80] 42 90.5 occurrences in window 33 [81,100] 43 110.5 occurrences in window 34 [101,120] 44 130.5 occurrences in window 35 [121,140] 45 150.5 occurrences in window 36 [141,160] 46 170.5 occurrences in window 37 [161,180] 47 190.5 occurrences in window 38 [181,200] 48 210.5 occurrences in window 39 [201,220] 49 230.5 occurrences in window 40 [221,240] 50 250.5 occurrences in window 41 [241,260] 51 270.5 occurrences in window 42 [261,280] 52 290.5 occurrences in window 43 [281,300] 53 310.5 occurrences in window 44 [301,320] 54 330.5 occurrences in window 45 [321,340] 55 350.5 occurrences in window 46 [341,360] 56 370.5 occurrences in window 47 [361,380] 57 390.5 occurrences in window 48 [381,400] 58 410.5 occurrences in window 49 [401,420] 59 430.5 occurrences in window 50 [421,440] 60 450.5 occurrences in window 51 [441,460] 61 470.5 occurrences in window 52 [461,480] 62 490.5 occurrences in window 53 [481,500] 63 510.5 occurrences in window 54 [501,520] 64 530.5 occurrences in window 55 [521,540] 65 550.5 occurrences in window 56 [541,560]
| seq | id | occ | chi2 | df | Pval | Eval | sig | rank | -549.5 | -529.5 | -509.5 | -489.5 | -469.5 | -449.5 | -429.5 | -409.5 | -389.5 | -369.5 | -349.5 | -329.5 | -309.5 | -289.5 | -269.5 | -249.5 | -229.5 | -209.5 | -189.5 | -169.5 | -149.5 | -129.5 | -109.5 | -89.5 | -69.5 | -49.5 | -29.5 | -9.5 | 10.5 | 30.5 | 50.5 | 70.5 | 90.5 | 110.5 | 130.5 | 150.5 | 170.5 | 190.5 | 210.5 | 230.5 | 250.5 | 270.5 | 290.5 | 310.5 | 330.5 | 350.5 | 370.5 | 390.5 | 410.5 | 430.5 | 450.5 | 470.5 | 490.5 | 510.5 | 530.5 | 550.5 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| t | t | 5792 | 84.2 | 55 | 6.9e-03 | 0.028 | 1.56 | 1 | 2 | 9 | 12 | 24 | 28 | 41 | 39 | 55 | 62 | 57 | 76 | 65 | 69 | 70 | 87 | 99 | 97 | 131 | 143 | 140 | 161 | 143 | 178 | 209 | 211 | 200 | 187 | 218 | 206 | 174 | 185 | 213 | 195 | 180 | 162 | 171 | 140 | 141 | 145 | 130 | 87 | 79 | 92 | 109 | 81 | 80 | 58 | 65 | 83 | 64 | 47 | 40 | 22 | 17 | 12 | 1 |
| a | a | 5615 | 61.0 | 55 | 2.7e-01 | 1.1 | -0.03 | 2 | 2 | 15 | 14 | 24 | 25 | 41 | 69 | 61 | 55 | 72 | 78 | 91 | 86 | 104 | 95 | 117 | 120 | 133 | 127 | 124 | 139 | 134 | 127 | 148 | 189 | 207 | 207 | 215 | 207 | 220 | 202 | 197 | 186 | 130 | 144 | 129 | 134 | 133 | 120 | 106 | 98 | 99 | 95 | 82 | 109 | 83 | 61 | 55 | 56 | 49 | 43 | 19 | 19 | 8 | 11 | 1 |
| g | g | 3696 | 58.2 | 55 | 3.6e-01 | 1.4 | -0.15 | 3 | 2 | 6 | 7 | 13 | 30 | 34 | 46 | 39 | 43 | 49 | 54 | 71 | 62 | 46 | 63 | 54 | 86 | 85 | 83 | 100 | 79 | 118 | 127 | 119 | 127 | 116 | 138 | 115 | 126 | 133 | 119 | 110 | 101 | 108 | 99 | 100 | 103 | 77 | 75 | 62 | 57 | 52 | 53 | 49 | 44 | 63 | 52 | 40 | 32 | 41 | 32 | 25 | 16 | 7 | 6 | 2 |
| c | c | 3793 | 46.2 | 55 | 7.9e-01 | 3.2 | -0.50 | 4 | 0 | 10 | 7 | 7 | 27 | 37 | 46 | 45 | 40 | 42 | 66 | 69 | 63 | 63 | 55 | 58 | 68 | 79 | 89 | 100 | 103 | 105 | 107 | 124 | 116 | 137 | 128 | 112 | 121 | 133 | 154 | 122 | 115 | 117 | 95 | 82 | 85 | 90 | 86 | 72 | 80 | 70 | 60 | 60 | 66 | 43 | 47 | 40 | 29 | 46 | 26 | 25 | 7 | 8 | 11 | 0 |
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