RSAT - peak-motifs result

Analysis: ld (27/05/2026 21:50)

peak-motifs  -v 1 -title ld -i $RSAT/public_html/tmp/www-data/2026/05/27/peak-motifs.2026-05-27.215012_2026-05-27.215012_WiGkpW/peak-motifspeak_seq -max_seq_len 1200 -markov auto -disco oligos,positions -nmotifs 5 -minol 6 -maxol 7 -no_merge_lengths -2str -origin center -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2026/05/27/peak-motifs.2026-05-27.215012_2026-05-27.215012_WiGkpW

motif discovery
oligos_6nt_mkv2	oligos_6nt_mkv2_m1 assembly: tacata (sig=1.53; e-value=0.03) RC: tatgta oligos_6nt_mkv2_m2 assembly: ccgccc (sig=0.67; e-value=0.21) RC: gggcgg oligos_6nt_mkv2_m3 assembly: acttac (sig=0.63; e-value=0.23) RC: gtaagt oligos_6nt_mkv2_m4 assembly: cactca (sig=0.50; e-value=0.32) RC: tgagtg oligos_6nt_mkv2_m5 assembly: gggtca (sig=0.05; e-value=0.89) RC: tgaccc	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
positions_6nt	Not a single significant pattern	[positions_6nt]
oligos_7nt_mkv2	oligos_7nt_mkv2_m1 assembly: atatgta (sig=1.33; e-value=0.047) RC: tacatat oligos_7nt_mkv2_m2 assembly: ctcgctc (sig=1.10; e-value=0.079) RC: gagcgag oligos_7nt_mkv2_m3 assembly: cctaatc (sig=0.29; e-value=0.51) RC: gattagg oligos_7nt_mkv2_m4 assembly: cctcctc (sig=0.11; e-value=0.78) RC: gaggagg oligos_7nt_mkv2_m5 : (sig=; e-value=1) RC:	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
positions_7nt	Not a single significant pattern	[positions_7nt]

Motif discovery
Motif 1   oligos_6nt_mkv2_m1	k-mer sig=1.53; evalue=0.03 trTACATAwr YWTATGTAYA	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 14 (42.42%) Max nb of predicted sites per peak: 3  (FBgn0086687|Desat1) Mean nb of predicted sites per peak: 1.64	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 2   oligos_6nt_mkv2_m2	k-mer sig=0.67; evalue=0.21 cyCCGCCCcc GGGGGCGGRG	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 10 (30.30%) Max nb of predicted sites per peak: 3  (FBgn0002719|Men) Mean nb of predicted sites per peak: 1.30	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 3   oligos_6nt_mkv2_m3	k-mer sig=0.63; evalue=0.23 skACtTACam KTGTAAGTMS	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 9 (27.27%) Max nb of predicted sites per peak: 3  (FBgn0032265|CG18301) Mean nb of predicted sites per peak: 1.33	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 4   oligos_6nt_mkv2_m4	k-mer sig=0.50; evalue=0.32 srCACtCAma TKTGAGTGYS	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 11 (33.33%) Max nb of predicted sites per peak: 17  (FBgn0020236|ATPCL) Mean nb of predicted sites per peak: 5.27	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 5   oligos_6nt_mkv2_m5	k-mer sig=0.05; evalue=0.89 syGGGTCahg CDTGACCCRS	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 9 (27.27%) Max nb of predicted sites per peak: 4  (FBgn0264294|Cyt-b5) Mean nb of predicted sites per peak: 1.56	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 6   oligos_7nt_mkv2_m1	k-mer sig=1.33; evalue=0.047 ryATATGTAbd HVTACATATRY	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 11 (33.33%) Max nb of predicted sites per peak: 4  (FBgn0264294|Cyt-b5) Mean nb of predicted sites per peak: 1.73	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 7   oligos_7nt_mkv2_m2	k-mer sig=1.10; evalue=0.079 skCTCGCTCwc GWGAGCGAGMS	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 12 (36.36%) Max nb of predicted sites per peak: 11  (FBgn0015623|Cpr) Mean nb of predicted sites per peak: 2.25	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 8   oligos_7nt_mkv2_m3	k-mer sig=0.29; evalue=0.51 krCCTAATCks SMGATTAGGYM	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 13 (39.39%) Max nb of predicted sites per peak: 2  (FBgn0086687|Desat1) Mean nb of predicted sites per peak: 1.31	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 9   oligos_7nt_mkv2_m4	k-mer sig=0.11; evalue=0.78 ssCCTCCTCsc GSGAGGAGGSS	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 9 (27.27%) Max nb of predicted sites per peak: 3  (FBgn0030608|Lsd-2) Mean nb of predicted sites per peak: 1.78	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]

Command:  peak-motifs  -v 1 -title ld -i $RSAT/public_html/tmp/www-data/2026/05/27/peak-motifs.2026-05-27.215012_2026-05-27.215012_WiGkpW/peak-motifspeak_seq -max_seq_len 1200 -markov auto -disco oligos,positions -nmotifs 5 -minol 6 -maxol 7 -no_merge_lengths -2str -origin center -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2026/05/27/peak-motifs.2026-05-27.215012_2026-05-27.215012_WiGkpW

Warning: Not a single pattern was found in file tmp/www-data/2026/05/27/peak-motifs.2026-05-27.215012_2026-05-27.215012_WiGkpW/results/positions_6nt/peak-motifs_positions-2str-noov_6nt_ci50.tab

Warning: Not a single pattern was found in file tmp/www-data/2026/05/27/peak-motifs.2026-05-27.215012_2026-05-27.215012_WiGkpW/results/positions_7nt/peak-motifs_positions-2str-noov_7nt_ci50.tab