RSAT - peak-motifs result

Analysis: prot3 (27/05/2026 22:42)

peak-motifs  -v 1 -title prot3 -i $RSAT/public_html/tmp/www-data/2026/05/27/peak-motifs.2026-05-27.224133_2026-05-27.224133_Gpdmcw/peak-motifspeak_seq -max_seq_len 1200 -markov auto -disco oligos,positions -nmotifs 5 -minol 6 -maxol 7 -no_merge_lengths -2str -origin center -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2026/05/27/peak-motifs.2026-05-27.224133_2026-05-27.224133_Gpdmcw

motif discovery
oligos_6nt_mkv2	oligos_6nt_mkv2_m1 assembly: actcacc (sig=3.74; e-value=0.00018) RC: ggtgagt oligos_6nt_mkv2_m2 assembly: tatcgata (sig=2.69; e-value=0.002) RC: tatcgata oligos_6nt_mkv2_m3 assembly: caaatgag (sig=0.85; e-value=0.14) RC: ctcatttg oligos_6nt_mkv2_m4 assembly: acttacc (sig=0.77; e-value=0.17) RC: ggtaagt oligos_6nt_mkv2_m5 assembly: tgggaa (sig=0.10; e-value=0.79) RC: ttccca	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
positions_6nt	Not a single significant pattern	[positions_6nt]
oligos_7nt_mkv2	oligos_7nt_mkv2_m1 assembly: actcacctg (sig=6.54; e-value=2.9e-07) RC: caggtgagt oligos_7nt_mkv2_m2 assembly: atatcgatat (sig=5.43; e-value=3.7e-06) RC: atatcgatat oligos_7nt_mkv2_m3 assembly: aggtaagt (sig=2.51; e-value=0.0031) RC: acttacct oligos_7nt_mkv2_m4 assembly: cgataac (sig=2.41; e-value=0.0039) RC: gttatcg oligos_7nt_mkv2_m5 assembly: aaatgag (sig=1.32; e-value=0.048) RC: ctcattt	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
positions_7nt	Not a single significant pattern	[positions_7nt]

Motif discovery
Motif 1   oligos_6nt_mkv2_m1	k-mer sig=3.74; evalue=0.00018 scACTCaCCtr YAGGTGAGTGS	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 21 (42.00%) Max nb of predicted sites per peak: 4  (FBgn0002787|Rpn8) Mean nb of predicted sites per peak: 1.52	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 2   oligos_6nt_mkv2_m2	k-mer sig=2.69; evalue=0.002 satATCGATats SATATCGATATS	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 17 (34.00%) Max nb of predicted sites per peak: 8  (FBgn0028689|Rpn6) Mean nb of predicted sites per peak: 2.94	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 3   oligos_6nt_mkv2_m3	k-mer sig=0.85; evalue=0.14 rsCAAATGAGwr YWCTCATTTGSY	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 16 (32.00%) Max nb of predicted sites per peak: 2  (FBgn0031442|Prosbeta4R1) Mean nb of predicted sites per peak: 1.19	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 4   oligos_6nt_mkv2_m4	k-mer sig=0.77; evalue=0.17 syACTtACCtg CAGGTAAGTRS	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 23 (46.00%) Max nb of predicted sites per peak: 5  (FBgn0002787|Rpn8) Mean nb of predicted sites per peak: 1.39	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 5   oligos_6nt_mkv2_m5	k-mer sig=0.10; evalue=0.79 syTGGGAAmw WKTTCCCARS	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 21 (42.00%) Max nb of predicted sites per peak: 3  (FBgn0036465|Rpn12R) Mean nb of predicted sites per peak: 1.43	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 6   oligos_7nt_mkv2_m1	k-mer sig=6.54; evalue=2.9e-07 syACTCaCCtGsr YSCAGGTGAGTRS	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 25 (50.00%) Max nb of predicted sites per peak: 5  (FBgn0002787|Rpn8) Mean nb of predicted sites per peak: 1.44	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 7   oligos_7nt_mkv2_m2	k-mer sig=5.43; evalue=3.7e-06 rsatATCGATatsy RSATATCGATATSY	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 17 (34.00%) Max nb of predicted sites per peak: 8  (FBgn0028689|Rpn6) Mean nb of predicted sites per peak: 3.00	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 8   oligos_7nt_mkv2_m3	k-mer sig=2.51; evalue=0.0031 gCAGGTrAGTtb VAACTYACCTGC	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 25 (50.00%) Max nb of predicted sites per peak: 5  (FBgn0002787|Rpn8) Mean nb of predicted sites per peak: 1.36	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 9   oligos_7nt_mkv2_m4	k-mer sig=2.41; evalue=0.0039 atCGATAaCkd HMGTTATCGAT	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 16 (32.00%) Max nb of predicted sites per peak: 3  (FBgn0037742|Rpt3R) Mean nb of predicted sites per peak: 1.38	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 10   oligos_7nt_mkv2_m5	k-mer sig=1.32; evalue=0.048 raaAAtGAGkg CMCTCATTTTY	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 18 (36.00%) Max nb of predicted sites per peak: 4  (FBgn0029745|Rpn13R) Mean nb of predicted sites per peak: 1.33	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]

Command:  peak-motifs  -v 1 -title prot3 -i $RSAT/public_html/tmp/www-data/2026/05/27/peak-motifs.2026-05-27.224133_2026-05-27.224133_Gpdmcw/peak-motifspeak_seq -max_seq_len 1200 -markov auto -disco oligos,positions -nmotifs 5 -minol 6 -maxol 7 -no_merge_lengths -2str -origin center -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2026/05/27/peak-motifs.2026-05-27.224133_2026-05-27.224133_Gpdmcw

Warning: Not a single pattern was found in file tmp/www-data/2026/05/27/peak-motifs.2026-05-27.224133_2026-05-27.224133_Gpdmcw/results/positions_6nt/peak-motifs_positions-2str-noov_6nt_ci50.tab

Warning: Not a single pattern was found in file tmp/www-data/2026/05/27/peak-motifs.2026-05-27.224133_2026-05-27.224133_Gpdmcw/results/positions_7nt/peak-motifs_positions-2str-noov_7nt_ci50.tab