One-to-n alignments

Command: compare-matrices  -v 1 -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2026/05/29/compare-matrices_2026-05-29.151903_RSnfAu/compare-matrices_query_matrices.transfac -file2 $RSAT/public_html/motif_databases/footprintDB/footprintDB.motif.tf -format2 tf -strand DR -lth cor 0.7 -lth Ncor 0.4 -uth match_rank 50 -return cor,Ncor,logoDP,NsEucl,NSW,match_rank,matrix_id,matrix_name,width,strand,offset,consensus,alignments_1ton -o $RSAT/public_html/tmp/www-data/2026/05/29/compare-matrices_2026-05-29.151903_RSnfAu/compare-matrices.tab

One-to-n matrix alignment; reference matrix: dyads_test_vs_ctrl_m1_shift2 ; 14 matrices ; sort_field=rank_mean

Matrix name Aligned logos cor Ncor logoDP NsEucl NSW rcor rNcor rlogoDP rNsEucl rNSW rank_mean match_rank Aligned matrices
dyads_test_vs_ctrl_m1_shift2 (dyads_test_vs_ctrl_m1)
; dyads_test_vs_ctrl_m1; m=0 (reference); ncol1=19; shift=2; ncol=21; --gmkGCATGwrwcakGCCkw ; Alignment reference a 0 0 5 6 4 0 1 19 2 2 9 6 7 4 14 2 0 0 0 4 8 c 0 0 3 8 1 0 19 1 3 1 2 4 3 14 0 3 0 21 21 3 2 g 0 0 8 2 8 20 1 0 1 17 4 7 4 0 4 8 21 0 0 7 1 t 0 0 5 5 8 1 0 1 15 1 6 4 7 3 3 8 0 0 0 7 10

M03D4.4_M0460_1.02_CISBP_shift2 (M03D4.4:M0460_1.02:CISBP) 0.879 0.509 5.477 0.930 0.947 1 1 1 2 3 1.600 1
; dyads_test_vs_ctrl_m1 versus M03D4.4_M0460_1.02_CISBP (M03D4.4:M0460_1.02:CISBP); m=1/13; ncol2=11; w=0; offset=0; strand=D; shift=2; score= 1.6; --caTGCATGAwc-------- ; cor=0.879; Ncor=0.509; logoDP=5.477; NsEucl=0.930; NSW=0.947; rcor=1; rNcor=1; rlogoDP=1; rNsEucl=2; rNSW=3; rank_mean=1.600; match_rank=1 a 0 0 21 54 2 0 0 100 0 0 88 29 23 0 0 0 0 0 0 0 0 c 0 0 37 11 19 0 100 0 0 0 4 24 31 0 0 0 0 0 0 0 0 g 0 0 21 18 1 100 0 0 0 100 4 14 23 0 0 0 0 0 0 0 0 t 0 0 21 17 78 0 0 0 100 0 4 33 23 0 0 0 0 0 0 0 0

LEC2_MA0581.1_JASPAR_rc_shift1 (LEC2:MA0581.1:JASPAR_rc) 0.878 0.439 0.350 0.931 0.952 2 8 10 1 1 4.400 2
; dyads_test_vs_ctrl_m1 versus LEC2_MA0581.1_JASPAR_rc (LEC2:MA0581.1:JASPAR_rc); m=2/13; ncol2=11; w=-1; offset=-1; strand=R; shift=1; score= 4.4; -awgyGCATGsa--------- ; cor=0.878; Ncor=0.439; logoDP=0.350; NsEucl=0.931; NSW=0.952; rcor=2; rNcor=8; rlogoDP=10; rNsEucl=1; rNSW=1; rank_mean=4.400; match_rank=2 a 0 250 129 94 0 0 0 487 0 10 63 175 0 0 0 0 0 0 0 0 0 c 0 62 44 60 156 0 487 0 0 0 165 119 0 0 0 0 0 0 0 0 0 g 0 79 86 218 30 487 0 0 0 475 163 86 0 0 0 0 0 0 0 0 0 t 0 96 228 115 301 0 0 0 487 2 96 107 0 0 0 0 0 0 0 0 0

stuA_M0087_1.02_CISBP_rc_shift2 (stuA:M0087_1.02:CISBP_rc) 0.799 0.421 0.369 0.929 0.950 5 11 9 3 2 6.000 3
; dyads_test_vs_ctrl_m1 versus stuA_M0087_1.02_CISBP_rc (stuA:M0087_1.02:CISBP_rc); m=3/13; ncol2=10; w=0; offset=0; strand=R; shift=2; score= 6; --cmTGCAkrwr--------- ; cor=0.799; Ncor=0.421; logoDP=0.369; NsEucl=0.929; NSW=0.950; rcor=5; rNcor=11; rlogoDP=9; rNsEucl=3; rNSW=2; rank_mean=6.000; match_rank=3 a 0 0 16 26 7 16 1 81 4 34 29 33 0 0 0 0 0 0 0 0 0 c 0 0 40 35 19 2 88 3 7 18 21 21 0 0 0 0 0 0 0 0 0 g 0 0 21 20 0 73 0 9 30 33 13 25 0 0 0 0 0 0 0 0 0 t 0 0 23 19 74 9 11 7 59 15 37 21 0 0 0 0 0 0 0 0 0

hbx7_M0876_1.02_CISBP_rc_shift1 (hbx7:M0876_1.02:CISBP_rc) 0.755 0.453 0.240 0.928 0.938 7 5 11 4 4 6.200 4
; dyads_test_vs_ctrl_m1 versus hbx7_M0876_1.02_CISBP_rc (hbx7:M0876_1.02:CISBP_rc); m=4/13; ncol2=13; w=-1; offset=-1; strand=R; shift=1; score= 6.2; -awgkGCATkttht------- ; cor=0.755; Ncor=0.453; logoDP=0.240; NsEucl=0.928; NSW=0.938; rcor=7; rNcor=5; rlogoDP=11; rNsEucl=4; rNSW=4; rank_mean=6.200; match_rank=4 a 0 33 30 24 10 12 0 100 0 22 24 10 35 23 0 0 0 0 0 0 0 c 0 22 20 15 20 2 80 0 0 3 5 20 25 22 0 0 0 0 0 0 0 g 0 23 20 46 41 83 0 0 0 43 5 10 15 23 0 0 0 0 0 0 0 t 0 22 30 15 29 3 20 0 100 32 66 60 25 32 0 0 0 0 0 0 0

FUS3_MA0565.2_JASPAR_rc_shift3 (FUS3:MA0565.2:JASPAR_rc) 0.849 0.447 3.776 0.912 0.923 4 7 6 9 6 6.400 5
; dyads_test_vs_ctrl_m1 versus FUS3_MA0565.2_JASPAR_rc (FUS3:MA0565.2:JASPAR_rc); m=5/13; ncol2=10; w=0; offset=1; strand=R; shift=3; score= 6.4; ---wTGCATGTdw-------- ; cor=0.849; Ncor=0.447; logoDP=3.776; NsEucl=0.912; NSW=0.923; rcor=4; rNcor=7; rlogoDP=6; rNsEucl=9; rNSW=6; rank_mean=6.400; match_rank=5 a 0 0 0 477 45 0 0 1137 1 0 0 339 307 0 0 0 0 0 0 0 0 c 0 0 0 98 28 0 1145 1 2 0 0 143 218 0 0 0 0 0 0 0 0 g 0 0 0 125 18 1146 1 5 2 1146 0 309 152 0 0 0 0 0 0 0 0 t 0 0 0 446 1055 0 0 3 1141 0 1146 355 469 0 0 0 0 0 0 0 0

AtLEC2_AtLEC2_Athamap_rc_shift2 (AtLEC2:AtLEC2:Athamap_rc) 0.851 0.448 0.235 0.914 0.926 3 6 12 6 5 6.400 6
; dyads_test_vs_ctrl_m1 versus AtLEC2_AtLEC2_Athamap_rc (AtLEC2:AtLEC2:Athamap_rc); m=6/13; ncol2=10; w=0; offset=0; strand=R; shift=2; score= 6.4; --ttTGCATGrm--------- ; cor=0.851; Ncor=0.448; logoDP=0.235; NsEucl=0.914; NSW=0.926; rcor=3; rNcor=6; rlogoDP=12; rNsEucl=6; rNSW=5; rank_mean=6.400; match_rank=6 a 0 0 1 1 0 0 0 9 0 0 3 4 0 0 0 0 0 0 0 0 0 c 0 0 1 1 0 0 9 0 0 0 0 3 0 0 0 0 0 0 0 0 0 g 0 0 1 1 0 9 0 0 0 9 4 0 0 0 0 0 0 0 0 0 0 t 0 0 5 5 9 0 0 0 9 0 2 2 0 0 0 0 0 0 0 0 0

Cgd2_3490_UP00395A_1_UniPROBE_rc_shift1 (Cgd2_3490:UP00395A_1:UniPROBE_rc) 0.714 0.464 5.376 0.913 0.901 11 2 2 8 10 6.600 7
; dyads_test_vs_ctrl_m1 versus Cgd2_3490_UP00395A_1_UniPROBE_rc (Cgd2_3490:UP00395A_1:UniPROBE_rc); m=7/13; ncol2=14; w=-1; offset=-1; strand=R; shift=1; score= 6.6; -gsryGCATGCrkkk------ ; cor=0.714; Ncor=0.464; logoDP=5.376; NsEucl=0.913; NSW=0.901; rcor=11; rNcor=2; rlogoDP=2; rNsEucl=8; rNSW=10; rank_mean=6.600; match_rank=7 a 0 22 21 38 0 0.01 0 1 0 0 0 0.35 18 24 24 0 0 0 0 0 0 c 0 17 31 18 0.34 0 1 0 0 0 0.99 0.01 11 20 14 0 0 0 0 0 0 g 0 48 37 27 0 0.99 0 0 0 1 0 0.64 43 29 31 0 0 0 0 0 0 t 0 13 11 17 0.66 0 0 0 1 0 0.01 0 28 27 31 0 0 0 0 0 0

FUS3.DAP_M0003_AthalianaCistrome_rc_shift0 (FUS3.DAP:M0003:AthalianaCistrome_rc) 0.741 0.459 0.378 0.916 0.907 9 4 8 5 7 6.600 8
; dyads_test_vs_ctrl_m1 versus FUS3.DAP_M0003_AthalianaCistrome_rc (FUS3.DAP:M0003:AthalianaCistrome_rc); m=8/13; ncol2=15; w=-2; offset=-2; strand=R; shift=0; score= 6.6; trywTGCATGyatdt------ ; cor=0.741; Ncor=0.459; logoDP=0.378; NsEucl=0.916; NSW=0.907; rcor=9; rNcor=4; rlogoDP=8; rNsEucl=5; rNSW=7; rank_mean=6.600; match_rank=8 a 120 155 95 330 0 0 0 589 0 0 38 348 106 210 132 0 0 0 0 0 0 c 77 77 229 23 1 0 585 0 0 0 230 33 94 63 62 0 0 0 0 0 0 g 63 222 58 30 0 589 1 0 0 589 50 118 47 155 76 0 0 0 0 0 0 t 329 135 207 206 588 0 3 0 589 0 271 90 342 161 319 0 0 0 0 0 0

PF14_0633_UP00394A_1_UniPROBE_rc_shift1 (PF14_0633:UP00394A_1:UniPROBE_rc) 0.708 0.460 4.823 0.913 0.903 13 3 5 7 8 7.200 9
; dyads_test_vs_ctrl_m1 versus PF14_0633_UP00394A_1_UniPROBE_rc (PF14_0633:UP00394A_1:UniPROBE_rc); m=9/13; ncol2=14; w=-1; offset=-1; strand=R; shift=1; score= 7.2; -dmyYGCATGCRwwh------ ; cor=0.708; Ncor=0.460; logoDP=4.823; NsEucl=0.913; NSW=0.903; rcor=13; rNcor=3; rlogoDP=5; rNsEucl=7; rNSW=8; rank_mean=7.200; match_rank=9 a 0 28 25 20 0 0.09 0.01 0.99 0.01 0 0 0.74 29 34 28 0 0 0 0 0 0 c 0 17 44 34 0.26 0 0.99 0 0 0 0.91 0 12 13 26 0 0 0 0 0 0 g 0 26 17 14 0 0.91 0 0 0 0.99 0 0.26 21 24 21 0 0 0 0 0 0 t 0 29 14 32 0.74 0 0 0.01 0.99 0.01 0.09 0 38 29 25 0 0 0 0 0 0

p53-a_UN0461.2_JASPAR_shift10 (p53-a:UN0461.2:JASPAR) 0.761 0.401 5.127 0.901 0.902 6 13 4 10 9 8.400 10
; dyads_test_vs_ctrl_m1 versus p53-a_UN0461.2_JASPAR (p53-a:UN0461.2:JASPAR); m=10/13; ncol2=10; w=0; offset=8; strand=D; shift=10; score= 8.4; ----------rGRCwTGCCC- ; cor=0.761; Ncor=0.401; logoDP=5.127; NsEucl=0.901; NSW=0.902; rcor=6; rNcor=13; rlogoDP=4; rNsEucl=10; rNSW=9; rank_mean=8.400; match_rank=10 a 0 0 0 0 0 0 0 0 0 0 400 82 685 6 503 30 4 10 8 48 0 c 0 0 0 0 0 0 0 0 0 0 41 11 13 984 108 74 7 867 973 717 0 g 0 0 0 0 0 0 0 0 0 0 512 892 288 4 65 15 986 9 6 24 0 t 0 0 0 0 0 0 0 0 0 0 48 15 14 6 325 881 3 115 14 211 0

BACH2_MA1101.3_JASPAR_rc_shift6 (BACH2:MA1101.3:JASPAR_rc) 0.747 0.433 3.509 0.895 0.880 8 9 7 12 12 9.600 11
; dyads_test_vs_ctrl_m1 versus BACH2_MA1101.3_JASPAR_rc (BACH2:MA1101.3:JASPAR_rc); m=11/13; ncol2=11; w=0; offset=4; strand=R; shift=6; score= 9.6; ------sATGAsTCATG---- ; cor=0.747; Ncor=0.433; logoDP=3.509; NsEucl=0.895; NSW=0.880; rcor=8; rNcor=9; rlogoDP=7; rNsEucl=12; rNSW=12; rank_mean=9.600; match_rank=11 a 0 0 0 0 0 0 5274 63746 0 3 67975 18 6 54 68266 0 8116 0 0 0 0 c 0 0 0 0 0 0 30498 2028 11 0 856 30785 13 68240 1 15304 6727 0 0 0 0 g 0 0 0 0 0 0 35220 11634 2 68215 20 37438 1088 0 7 260 61580 0 0 0 0 t 0 0 0 0 0 0 4522 47 68264 115 3 50 67846 6 1 62993 9369 0 0 0 0

ABI19_B73_1_m1_EEAD0171_EEADannot_shift2 (ABI19_B73_1_m1:EEAD0171:EEADannot) 0.728 0.421 5.243 0.892 0.872 10 10 3 13 13 9.800 12
; dyads_test_vs_ctrl_m1 versus ABI19_B73_1_m1_EEAD0171_EEADannot (ABI19_B73_1_m1:EEAD0171:EEADannot); m=12/13; ncol2=11; w=0; offset=0; strand=D; shift=2; score= 9.8; --CwTGCATGCry-------- ; cor=0.728; Ncor=0.421; logoDP=5.243; NsEucl=0.892; NSW=0.872; rcor=10; rNcor=10; rlogoDP=3; rNsEucl=13; rNSW=13; rank_mean=9.800; match_rank=12 a 0 0 2 62 1 0 0 99 1 0 2 65 7 0 0 0 0 0 0 0 0 c 0 0 85 3 2 1 100 0 2 1 90 2 31 0 0 0 0 0 0 0 0 g 0 0 6 2 0 99 0 0 1 99 2 32 20 0 0 0 0 0 0 0 0 t 0 0 7 33 97 0 0 1 96 0 6 1 42 0 0 0 0 0 0 0 0

at_AC_acceptor_SD0002.1_JASPAR_rc_shift10 (at_AC_acceptor:SD0002.1:JASPAR_rc) 0.711 0.411 0.225 0.900 0.890 12 12 13 11 11 11.800 13
; dyads_test_vs_ctrl_m1 versus at_AC_acceptor_SD0002.1_JASPAR_rc (at_AC_acceptor:SD0002.1:JASPAR_rc); m=13/13; ncol2=11; w=0; offset=8; strand=R; shift=10; score= 11.8; ----------ryACTTGCCTk ; cor=0.711; Ncor=0.411; logoDP=0.225; NsEucl=0.900; NSW=0.890; rcor=12; rNcor=12; rlogoDP=13; rNsEucl=11; rNSW=11; rank_mean=11.800; match_rank=13 a 0 0 0 0 0 0 0 0 0 0 184 91 425 5 35 10 0 0 8 50 33 c 0 0 0 0 0 0 0 0 0 0 119 196 43 525 48 23 0 548 524 20 95 g 0 0 0 0 0 0 0 0 0 0 137 74 41 9 16 11 548 0 1 17 197 t 0 0 0 0 0 0 0 0 0 0 108 187 39 9 449 504 0 0 15 461 223

Matrix name	cor	Ncor	logoDP	NsEucl	NSW	rcor	rNcor	rlogoDP	rNsEucl	rNSW	rank_mean	match_rank	Aligned matrices
dyads_test_vs_ctrl_m1_shift2 (dyads_test_vs_ctrl_m1)													; dyads_test_vs_ctrl_m1; m=0 (reference); ncol1=19; shift=2; ncol=21; --gmkGCATGwrwcakGCCkw ; Alignment reference a 0 0 5 6 4 0 1 19 2 2 9 6 7 4 14 2 0 0 0 4 8 c 0 0 3 8 1 0 19 1 3 1 2 4 3 14 0 3 0 21 21 3 2 g 0 0 8 2 8 20 1 0 1 17 4 7 4 0 4 8 21 0 0 7 1 t 0 0 5 5 8 1 0 1 15 1 6 4 7 3 3 8 0 0 0 7 10
M03D4.4_M0460_1.02_CISBP_shift2 (M03D4.4:M0460_1.02:CISBP)	0.879	0.509	5.477	0.930	0.947	1	1	1	2	3	1.600	1	; dyads_test_vs_ctrl_m1 versus M03D4.4_M0460_1.02_CISBP (M03D4.4:M0460_1.02:CISBP); m=1/13; ncol2=11; w=0; offset=0; strand=D; shift=2; score= 1.6; --caTGCATGAwc-------- ; cor=0.879; Ncor=0.509; logoDP=5.477; NsEucl=0.930; NSW=0.947; rcor=1; rNcor=1; rlogoDP=1; rNsEucl=2; rNSW=3; rank_mean=1.600; match_rank=1 a 0 0 21 54 2 0 0 100 0 0 88 29 23 0 0 0 0 0 0 0 0 c 0 0 37 11 19 0 100 0 0 0 4 24 31 0 0 0 0 0 0 0 0 g 0 0 21 18 1 100 0 0 0 100 4 14 23 0 0 0 0 0 0 0 0 t 0 0 21 17 78 0 0 0 100 0 4 33 23 0 0 0 0 0 0 0 0
LEC2_MA0581.1_JASPAR_rc_shift1 (LEC2:MA0581.1:JASPAR_rc)	0.878	0.439	0.350	0.931	0.952	2	8	10	1	1	4.400	2	; dyads_test_vs_ctrl_m1 versus LEC2_MA0581.1_JASPAR_rc (LEC2:MA0581.1:JASPAR_rc); m=2/13; ncol2=11; w=-1; offset=-1; strand=R; shift=1; score= 4.4; -awgyGCATGsa--------- ; cor=0.878; Ncor=0.439; logoDP=0.350; NsEucl=0.931; NSW=0.952; rcor=2; rNcor=8; rlogoDP=10; rNsEucl=1; rNSW=1; rank_mean=4.400; match_rank=2 a 0 250 129 94 0 0 0 487 0 10 63 175 0 0 0 0 0 0 0 0 0 c 0 62 44 60 156 0 487 0 0 0 165 119 0 0 0 0 0 0 0 0 0 g 0 79 86 218 30 487 0 0 0 475 163 86 0 0 0 0 0 0 0 0 0 t 0 96 228 115 301 0 0 0 487 2 96 107 0 0 0 0 0 0 0 0 0
stuA_M0087_1.02_CISBP_rc_shift2 (stuA:M0087_1.02:CISBP_rc)	0.799	0.421	0.369	0.929	0.950	5	11	9	3	2	6.000	3	; dyads_test_vs_ctrl_m1 versus stuA_M0087_1.02_CISBP_rc (stuA:M0087_1.02:CISBP_rc); m=3/13; ncol2=10; w=0; offset=0; strand=R; shift=2; score= 6; --cmTGCAkrwr--------- ; cor=0.799; Ncor=0.421; logoDP=0.369; NsEucl=0.929; NSW=0.950; rcor=5; rNcor=11; rlogoDP=9; rNsEucl=3; rNSW=2; rank_mean=6.000; match_rank=3 a 0 0 16 26 7 16 1 81 4 34 29 33 0 0 0 0 0 0 0 0 0 c 0 0 40 35 19 2 88 3 7 18 21 21 0 0 0 0 0 0 0 0 0 g 0 0 21 20 0 73 0 9 30 33 13 25 0 0 0 0 0 0 0 0 0 t 0 0 23 19 74 9 11 7 59 15 37 21 0 0 0 0 0 0 0 0 0
hbx7_M0876_1.02_CISBP_rc_shift1 (hbx7:M0876_1.02:CISBP_rc)	0.755	0.453	0.240	0.928	0.938	7	5	11	4	4	6.200	4	; dyads_test_vs_ctrl_m1 versus hbx7_M0876_1.02_CISBP_rc (hbx7:M0876_1.02:CISBP_rc); m=4/13; ncol2=13; w=-1; offset=-1; strand=R; shift=1; score= 6.2; -awgkGCATkttht------- ; cor=0.755; Ncor=0.453; logoDP=0.240; NsEucl=0.928; NSW=0.938; rcor=7; rNcor=5; rlogoDP=11; rNsEucl=4; rNSW=4; rank_mean=6.200; match_rank=4 a 0 33 30 24 10 12 0 100 0 22 24 10 35 23 0 0 0 0 0 0 0 c 0 22 20 15 20 2 80 0 0 3 5 20 25 22 0 0 0 0 0 0 0 g 0 23 20 46 41 83 0 0 0 43 5 10 15 23 0 0 0 0 0 0 0 t 0 22 30 15 29 3 20 0 100 32 66 60 25 32 0 0 0 0 0 0 0
FUS3_MA0565.2_JASPAR_rc_shift3 (FUS3:MA0565.2:JASPAR_rc)	0.849	0.447	3.776	0.912	0.923	4	7	6	9	6	6.400	5	; dyads_test_vs_ctrl_m1 versus FUS3_MA0565.2_JASPAR_rc (FUS3:MA0565.2:JASPAR_rc); m=5/13; ncol2=10; w=0; offset=1; strand=R; shift=3; score= 6.4; ---wTGCATGTdw-------- ; cor=0.849; Ncor=0.447; logoDP=3.776; NsEucl=0.912; NSW=0.923; rcor=4; rNcor=7; rlogoDP=6; rNsEucl=9; rNSW=6; rank_mean=6.400; match_rank=5 a 0 0 0 477 45 0 0 1137 1 0 0 339 307 0 0 0 0 0 0 0 0 c 0 0 0 98 28 0 1145 1 2 0 0 143 218 0 0 0 0 0 0 0 0 g 0 0 0 125 18 1146 1 5 2 1146 0 309 152 0 0 0 0 0 0 0 0 t 0 0 0 446 1055 0 0 3 1141 0 1146 355 469 0 0 0 0 0 0 0 0
AtLEC2_AtLEC2_Athamap_rc_shift2 (AtLEC2:AtLEC2:Athamap_rc)	0.851	0.448	0.235	0.914	0.926	3	6	12	6	5	6.400	6	; dyads_test_vs_ctrl_m1 versus AtLEC2_AtLEC2_Athamap_rc (AtLEC2:AtLEC2:Athamap_rc); m=6/13; ncol2=10; w=0; offset=0; strand=R; shift=2; score= 6.4; --ttTGCATGrm--------- ; cor=0.851; Ncor=0.448; logoDP=0.235; NsEucl=0.914; NSW=0.926; rcor=3; rNcor=6; rlogoDP=12; rNsEucl=6; rNSW=5; rank_mean=6.400; match_rank=6 a 0 0 1 1 0 0 0 9 0 0 3 4 0 0 0 0 0 0 0 0 0 c 0 0 1 1 0 0 9 0 0 0 0 3 0 0 0 0 0 0 0 0 0 g 0 0 1 1 0 9 0 0 0 9 4 0 0 0 0 0 0 0 0 0 0 t 0 0 5 5 9 0 0 0 9 0 2 2 0 0 0 0 0 0 0 0 0
Cgd2_3490_UP00395A_1_UniPROBE_rc_shift1 (Cgd2_3490:UP00395A_1:UniPROBE_rc)	0.714	0.464	5.376	0.913	0.901	11	2	2	8	10	6.600	7	; dyads_test_vs_ctrl_m1 versus Cgd2_3490_UP00395A_1_UniPROBE_rc (Cgd2_3490:UP00395A_1:UniPROBE_rc); m=7/13; ncol2=14; w=-1; offset=-1; strand=R; shift=1; score= 6.6; -gsryGCATGCrkkk------ ; cor=0.714; Ncor=0.464; logoDP=5.376; NsEucl=0.913; NSW=0.901; rcor=11; rNcor=2; rlogoDP=2; rNsEucl=8; rNSW=10; rank_mean=6.600; match_rank=7 a 0 22 21 38 0 0.01 0 1 0 0 0 0.35 18 24 24 0 0 0 0 0 0 c 0 17 31 18 0.34 0 1 0 0 0 0.99 0.01 11 20 14 0 0 0 0 0 0 g 0 48 37 27 0 0.99 0 0 0 1 0 0.64 43 29 31 0 0 0 0 0 0 t 0 13 11 17 0.66 0 0 0 1 0 0.01 0 28 27 31 0 0 0 0 0 0
FUS3.DAP_M0003_AthalianaCistrome_rc_shift0 (FUS3.DAP:M0003:AthalianaCistrome_rc)	0.741	0.459	0.378	0.916	0.907	9	4	8	5	7	6.600	8	; dyads_test_vs_ctrl_m1 versus FUS3.DAP_M0003_AthalianaCistrome_rc (FUS3.DAP:M0003:AthalianaCistrome_rc); m=8/13; ncol2=15; w=-2; offset=-2; strand=R; shift=0; score= 6.6; trywTGCATGyatdt------ ; cor=0.741; Ncor=0.459; logoDP=0.378; NsEucl=0.916; NSW=0.907; rcor=9; rNcor=4; rlogoDP=8; rNsEucl=5; rNSW=7; rank_mean=6.600; match_rank=8 a 120 155 95 330 0 0 0 589 0 0 38 348 106 210 132 0 0 0 0 0 0 c 77 77 229 23 1 0 585 0 0 0 230 33 94 63 62 0 0 0 0 0 0 g 63 222 58 30 0 589 1 0 0 589 50 118 47 155 76 0 0 0 0 0 0 t 329 135 207 206 588 0 3 0 589 0 271 90 342 161 319 0 0 0 0 0 0
PF14_0633_UP00394A_1_UniPROBE_rc_shift1 (PF14_0633:UP00394A_1:UniPROBE_rc)	0.708	0.460	4.823	0.913	0.903	13	3	5	7	8	7.200	9	; dyads_test_vs_ctrl_m1 versus PF14_0633_UP00394A_1_UniPROBE_rc (PF14_0633:UP00394A_1:UniPROBE_rc); m=9/13; ncol2=14; w=-1; offset=-1; strand=R; shift=1; score= 7.2; -dmyYGCATGCRwwh------ ; cor=0.708; Ncor=0.460; logoDP=4.823; NsEucl=0.913; NSW=0.903; rcor=13; rNcor=3; rlogoDP=5; rNsEucl=7; rNSW=8; rank_mean=7.200; match_rank=9 a 0 28 25 20 0 0.09 0.01 0.99 0.01 0 0 0.74 29 34 28 0 0 0 0 0 0 c 0 17 44 34 0.26 0 0.99 0 0 0 0.91 0 12 13 26 0 0 0 0 0 0 g 0 26 17 14 0 0.91 0 0 0 0.99 0 0.26 21 24 21 0 0 0 0 0 0 t 0 29 14 32 0.74 0 0 0.01 0.99 0.01 0.09 0 38 29 25 0 0 0 0 0 0
p53-a_UN0461.2_JASPAR_shift10 (p53-a:UN0461.2:JASPAR)	0.761	0.401	5.127	0.901	0.902	6	13	4	10	9	8.400	10	; dyads_test_vs_ctrl_m1 versus p53-a_UN0461.2_JASPAR (p53-a:UN0461.2:JASPAR); m=10/13; ncol2=10; w=0; offset=8; strand=D; shift=10; score= 8.4; ----------rGRCwTGCCC- ; cor=0.761; Ncor=0.401; logoDP=5.127; NsEucl=0.901; NSW=0.902; rcor=6; rNcor=13; rlogoDP=4; rNsEucl=10; rNSW=9; rank_mean=8.400; match_rank=10 a 0 0 0 0 0 0 0 0 0 0 400 82 685 6 503 30 4 10 8 48 0 c 0 0 0 0 0 0 0 0 0 0 41 11 13 984 108 74 7 867 973 717 0 g 0 0 0 0 0 0 0 0 0 0 512 892 288 4 65 15 986 9 6 24 0 t 0 0 0 0 0 0 0 0 0 0 48 15 14 6 325 881 3 115 14 211 0
BACH2_MA1101.3_JASPAR_rc_shift6 (BACH2:MA1101.3:JASPAR_rc)	0.747	0.433	3.509	0.895	0.880	8	9	7	12	12	9.600	11	; dyads_test_vs_ctrl_m1 versus BACH2_MA1101.3_JASPAR_rc (BACH2:MA1101.3:JASPAR_rc); m=11/13; ncol2=11; w=0; offset=4; strand=R; shift=6; score= 9.6; ------sATGAsTCATG---- ; cor=0.747; Ncor=0.433; logoDP=3.509; NsEucl=0.895; NSW=0.880; rcor=8; rNcor=9; rlogoDP=7; rNsEucl=12; rNSW=12; rank_mean=9.600; match_rank=11 a 0 0 0 0 0 0 5274 63746 0 3 67975 18 6 54 68266 0 8116 0 0 0 0 c 0 0 0 0 0 0 30498 2028 11 0 856 30785 13 68240 1 15304 6727 0 0 0 0 g 0 0 0 0 0 0 35220 11634 2 68215 20 37438 1088 0 7 260 61580 0 0 0 0 t 0 0 0 0 0 0 4522 47 68264 115 3 50 67846 6 1 62993 9369 0 0 0 0
ABI19_B73_1_m1_EEAD0171_EEADannot_shift2 (ABI19_B73_1_m1:EEAD0171:EEADannot)	0.728	0.421	5.243	0.892	0.872	10	10	3	13	13	9.800	12	; dyads_test_vs_ctrl_m1 versus ABI19_B73_1_m1_EEAD0171_EEADannot (ABI19_B73_1_m1:EEAD0171:EEADannot); m=12/13; ncol2=11; w=0; offset=0; strand=D; shift=2; score= 9.8; --CwTGCATGCry-------- ; cor=0.728; Ncor=0.421; logoDP=5.243; NsEucl=0.892; NSW=0.872; rcor=10; rNcor=10; rlogoDP=3; rNsEucl=13; rNSW=13; rank_mean=9.800; match_rank=12 a 0 0 2 62 1 0 0 99 1 0 2 65 7 0 0 0 0 0 0 0 0 c 0 0 85 3 2 1 100 0 2 1 90 2 31 0 0 0 0 0 0 0 0 g 0 0 6 2 0 99 0 0 1 99 2 32 20 0 0 0 0 0 0 0 0 t 0 0 7 33 97 0 0 1 96 0 6 1 42 0 0 0 0 0 0 0 0
at_AC_acceptor_SD0002.1_JASPAR_rc_shift10 (at_AC_acceptor:SD0002.1:JASPAR_rc)	0.711	0.411	0.225	0.900	0.890	12	12	13	11	11	11.800	13	; dyads_test_vs_ctrl_m1 versus at_AC_acceptor_SD0002.1_JASPAR_rc (at_AC_acceptor:SD0002.1:JASPAR_rc); m=13/13; ncol2=11; w=0; offset=8; strand=R; shift=10; score= 11.8; ----------ryACTTGCCTk ; cor=0.711; Ncor=0.411; logoDP=0.225; NsEucl=0.900; NSW=0.890; rcor=12; rNcor=12; rlogoDP=13; rNsEucl=11; rNSW=11; rank_mean=11.800; match_rank=13 a 0 0 0 0 0 0 0 0 0 0 184 91 425 5 35 10 0 0 8 50 33 c 0 0 0 0 0 0 0 0 0 0 119 196 43 525 48 23 0 548 524 20 95 g 0 0 0 0 0 0 0 0 0 0 137 74 41 9 16 11 548 0 1 17 197 t 0 0 0 0 0 0 0 0 0 0 108 187 39 9 449 504 0 0 15 461 223