/var/www/html/rsat/public_html/tmp/www-data/2026/05/29/peak-motifs.2026-05-29.111109_2026-05-29.111109_G9ggFA/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab 
 compare-matrices  -v 1 -format transfac -file $RSAT/public_html/tmp/www-data/2026/05/29/peak-motifs.2026-05-29.111109_2026-05-29.111109_G9ggFA/results/discovered_motifs/peak-motifs_motifs_discovered.tf -distinct -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/05/29/peak-motifs.2026-05-29.111109_2026-05-29.111109_G9ggFA/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab
 Program version       	1.118
 Quick mode 
 Input files
	file1 	$RSAT/public_html/tmp/www-data/2026/05/29/peak-motifs.2026-05-29.111109_2026-05-29.111109_G9ggFA/results/discovered_motifs/peak-motifs_motifs_discovered.tf
	file2 	$RSAT/public_html/tmp/www-data/2026/05/29/peak-motifs.2026-05-29.111109_2026-05-29.111109_G9ggFA/results/discovered_motifs/peak-motifs_motifs_discovered.tf
 Output files
	html_index   	$RSAT/public_html/tmp/www-data/2026/05/29/peak-motifs.2026-05-29.111109_2026-05-29.111109_G9ggFA/results/discovered_motifs/peak-motifs_motifs_disco_compa_index.html
	alignments_1ton	$RSAT/public_html/tmp/www-data/2026/05/29/peak-motifs.2026-05-29.111109_2026-05-29.111109_G9ggFA/results/discovered_motifs/peak-motifs_motifs_disco_compa_alignments_1ton.tab
	match_table_txt	$RSAT/public_html/tmp/www-data/2026/05/29/peak-motifs.2026-05-29.111109_2026-05-29.111109_G9ggFA/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab
	alignments_1ton_html	$RSAT/public_html/tmp/www-data/2026/05/29/peak-motifs.2026-05-29.111109_2026-05-29.111109_G9ggFA/results/discovered_motifs/peak-motifs_motifs_disco_compa_alignments_1ton.html
	prefix       	$RSAT/public_html/tmp/www-data/2026/05/29/peak-motifs.2026-05-29.111109_2026-05-29.111109_G9ggFA/results/discovered_motifs/peak-motifs_motifs_disco_compa
	match_table_html	$RSAT/public_html/tmp/www-data/2026/05/29/peak-motifs.2026-05-29.111109_2026-05-29.111109_G9ggFA/results/discovered_motifs/peak-motifs_motifs_disco_compa.html
 Matrices
	file1	14 matrices	$RSAT/public_html/tmp/www-data/2026/05/29/peak-motifs.2026-05-29.111109_2026-05-29.111109_G9ggFA/results/discovered_motifs/peak-motifs_motifs_discovered.tf
		file1	1	14	97
		file1	2	11	126
		file1	3	12	85
		file1	4	10	78
		file1	5	10	48
		file1	6	10	59
		file1	7	10	67
		file1	8	10	51
		file1	9	10	74
		file1	10	11	143
		file1	11	11	150
		...	4 more matrices
	file2	14 matrices	$RSAT/public_html/tmp/www-data/2026/05/29/peak-motifs.2026-05-29.111109_2026-05-29.111109_G9ggFA/results/discovered_motifs/peak-motifs_motifs_discovered.tf
		file2		1		14		97
		file2		2		11		126
		file2		3		12		85
		file2		4		10		78
		file2		5		10		48
		file2		6		10		59
		file2		7		10		67
		file2		8		10		51
		file2		9		10		74
		file2		10		11		143
		file2		11		11		150
		...	4 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_6nt_mkv3_m5 oligos_6nt_mkv3_m5 oligos_6nt_mkv3_m5 oligos_6nt_mkv3_m5 1.000 1.000 10 10 10 10 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv3_m2 oligos_6nt_mkv3_m2 oligos_6nt_mkv3_m2 oligos_6nt_mkv3_m2 1.000 1.000 11 11 11 11 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv3_m8 oligos_6nt_mkv3_m8 oligos_6nt_mkv3_m8 oligos_6nt_mkv3_m8 1.000 1.000 10 10 10 10 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv3_m7 oligos_6nt_mkv3_m7 oligos_6nt_mkv3_m7 oligos_6nt_mkv3_m7 1.000 1.000 10 10 10 10 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv4_m5 oligos_7nt_mkv4_m5 oligos_7nt_mkv4_m5 oligos_7nt_mkv4_m5 1.000 1.000 11 11 11 11 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv3_m9 oligos_6nt_mkv3_m9 oligos_6nt_mkv3_m9 oligos_6nt_mkv3_m9 1.000 1.000 10 10 10 10 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv4_m4 oligos_7nt_mkv4_m4 oligos_7nt_mkv4_m4 oligos_7nt_mkv4_m4 1.000 1.000 11 11 11 11 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv3_m4 oligos_6nt_mkv3_m4 oligos_6nt_mkv3_m4 oligos_6nt_mkv3_m4 1.000 1.000 10 10 10 10 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv4_m2 oligos_7nt_mkv4_m2 oligos_7nt_mkv4_m2 oligos_7nt_mkv4_m2 1.000 1.000 11 11 11 11 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv3_m6 oligos_6nt_mkv3_m6 oligos_6nt_mkv3_m6 oligos_6nt_mkv3_m6 1.000 1.000 10 10 10 10 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv4_m3 oligos_7nt_mkv4_m3 oligos_7nt_mkv4_m3 oligos_7nt_mkv4_m3 1.000 1.000 11 11 11 11 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv3_m1 oligos_6nt_mkv3_m1 oligos_6nt_mkv3_m1 oligos_6nt_mkv3_m1 1.000 1.000 14 14 14 14 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv4_m1 oligos_7nt_mkv4_m1 oligos_7nt_mkv4_m1 oligos_7nt_mkv4_m1 1.000 1.000 11 11 11 11 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv3_m3 oligos_6nt_mkv3_m3 oligos_6nt_mkv3_m3 oligos_6nt_mkv3_m3 1.000 1.000 12 12 12 12 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv4_m1 oligos_6nt_mkv3_m3 oligos_7nt_mkv4_m1 oligos_6nt_mkv3_m3 0.972 0.891 11 12 11 12 0.9167 1.0000 0.9167 R -1
oligos_6nt_mkv3_m3 oligos_7nt_mkv4_m1 oligos_6nt_mkv3_m3 oligos_7nt_mkv4_m1 0.972 0.891 12 11 11 12 0.9167 0.9167 1.0000 R 0
oligos_7nt_mkv4_m5 oligos_7nt_mkv4_m1 oligos_7nt_mkv4_m5 oligos_7nt_mkv4_m1 0.881 0.881 11 11 11 11 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv4_m1 oligos_7nt_mkv4_m5 oligos_7nt_mkv4_m1 oligos_7nt_mkv4_m5 0.881 0.881 11 11 11 11 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv4_m2 oligos_6nt_mkv3_m5 oligos_7nt_mkv4_m2 oligos_6nt_mkv3_m5 0.969 0.881 11 10 10 11 0.9091 0.9091 1.0000 R 0
oligos_6nt_mkv3_m5 oligos_7nt_mkv4_m2 oligos_6nt_mkv3_m5 oligos_7nt_mkv4_m2 0.969 0.881 10 11 10 11 0.9091 1.0000 0.9091 R -1
oligos_6nt_mkv3_m7 oligos_7nt_mkv4_m3 oligos_6nt_mkv3_m7 oligos_7nt_mkv4_m3 0.958 0.871 10 11 10 11 0.9091 1.0000 0.9091 R 0
oligos_7nt_mkv4_m3 oligos_6nt_mkv3_m7 oligos_7nt_mkv4_m3 oligos_6nt_mkv3_m7 0.958 0.871 11 10 10 11 0.9091 0.9091 1.0000 R 1
oligos_7nt_mkv4_m5 oligos_6nt_mkv3_m3 oligos_7nt_mkv4_m5 oligos_6nt_mkv3_m3 0.875 0.802 11 12 11 12 0.9167 1.0000 0.9167 R -1
oligos_6nt_mkv3_m3 oligos_7nt_mkv4_m5 oligos_6nt_mkv3_m3 oligos_7nt_mkv4_m5 0.875 0.802 12 11 11 12 0.9167 0.9167 1.0000 R 0
oligos_6nt_mkv3_m1 oligos_6nt_mkv3_m3 oligos_6nt_mkv3_m1 oligos_6nt_mkv3_m3 0.926 0.793 14 12 12 14 0.8571 0.8571 1.0000 R 2
oligos_6nt_mkv3_m3 oligos_6nt_mkv3_m1 oligos_6nt_mkv3_m3 oligos_6nt_mkv3_m1 0.926 0.793 12 14 12 14 0.8571 1.0000 0.8571 R 0
oligos_6nt_mkv3_m7 oligos_6nt_mkv3_m8 oligos_6nt_mkv3_m7 oligos_6nt_mkv3_m8 0.787 0.787 10 10 10 10 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv3_m8 oligos_6nt_mkv3_m7 oligos_6nt_mkv3_m8 oligos_6nt_mkv3_m7 0.787 0.787 10 10 10 10 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv4_m1 oligos_6nt_mkv3_m1 oligos_7nt_mkv4_m1 oligos_6nt_mkv3_m1 0.964 0.757 11 14 11 14 0.7857 1.0000 0.7857 D -3
oligos_6nt_mkv3_m1 oligos_7nt_mkv4_m1 oligos_6nt_mkv3_m1 oligos_7nt_mkv4_m1 0.964 0.757 14 11 11 14 0.7857 0.7857 1.0000 D 3
oligos_6nt_mkv3_m5 oligos_6nt_mkv3_m6 oligos_6nt_mkv3_m5 oligos_6nt_mkv3_m6 0.753 0.753 10 10 10 10 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv3_m6 oligos_6nt_mkv3_m5 oligos_6nt_mkv3_m6 oligos_6nt_mkv3_m5 0.753 0.753 10 10 10 10 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv3_m1 oligos_7nt_mkv4_m4 oligos_6nt_mkv3_m1 oligos_7nt_mkv4_m4 0.940 0.739 14 11 11 14 0.7857 0.7857 1.0000 R 1
oligos_7nt_mkv4_m4 oligos_6nt_mkv3_m1 oligos_7nt_mkv4_m4 oligos_6nt_mkv3_m1 0.940 0.739 11 14 11 14 0.7857 1.0000 0.7857 R -2
oligos_7nt_mkv4_m2 oligos_6nt_mkv3_m6 oligos_7nt_mkv4_m2 oligos_6nt_mkv3_m6 0.789 0.717 11 10 10 11 0.9091 0.9091 1.0000 R 0
oligos_6nt_mkv3_m6 oligos_7nt_mkv4_m2 oligos_6nt_mkv3_m6 oligos_7nt_mkv4_m2 0.789 0.717 10 11 10 11 0.9091 1.0000 0.9091 R -1
oligos_7nt_mkv4_m5 oligos_6nt_mkv3_m1 oligos_7nt_mkv4_m5 oligos_6nt_mkv3_m1 0.895 0.703 11 14 11 14 0.7857 1.0000 0.7857 D -3
oligos_6nt_mkv3_m1 oligos_7nt_mkv4_m5 oligos_6nt_mkv3_m1 oligos_7nt_mkv4_m5 0.895 0.703 14 11 11 14 0.7857 0.7857 1.0000 D 3
oligos_6nt_mkv3_m4 oligos_7nt_mkv4_m3 oligos_6nt_mkv3_m4 oligos_7nt_mkv4_m3 0.854 0.641 10 11 9 12 0.7500 0.9000 0.8182 R -2
oligos_7nt_mkv4_m3 oligos_6nt_mkv3_m4 oligos_7nt_mkv4_m3 oligos_6nt_mkv3_m4 0.854 0.641 11 10 9 12 0.7500 0.8182 0.9000 R -1
oligos_7nt_mkv4_m4 oligos_6nt_mkv3_m3 oligos_7nt_mkv4_m4 oligos_6nt_mkv3_m3 0.810 0.623 11 12 10 13 0.7692 0.9091 0.8333 D -2
oligos_6nt_mkv3_m3 oligos_7nt_mkv4_m4 oligos_6nt_mkv3_m3 oligos_7nt_mkv4_m4 0.810 0.623 12 11 10 13 0.7692 0.8333 0.9091 D 2
oligos_7nt_mkv4_m1 oligos_7nt_mkv4_m4 oligos_7nt_mkv4_m1 oligos_7nt_mkv4_m4 0.850 0.589 11 11 9 13 0.6923 0.8182 0.8182 R -2
oligos_7nt_mkv4_m4 oligos_7nt_mkv4_m1 oligos_7nt_mkv4_m4 oligos_7nt_mkv4_m1 0.850 0.589 11 11 9 13 0.6923 0.8182 0.8182 R -2
oligos_7nt_mkv4_m4 oligos_7nt_mkv4_m5 oligos_7nt_mkv4_m4 oligos_7nt_mkv4_m5 0.843 0.583 11 11 9 13 0.6923 0.8182 0.8182 R -2
oligos_7nt_mkv4_m5 oligos_7nt_mkv4_m4 oligos_7nt_mkv4_m5 oligos_7nt_mkv4_m4 0.843 0.583 11 11 9 13 0.6923 0.8182 0.8182 R -2
oligos_6nt_mkv3_m7 oligos_6nt_mkv3_m4 oligos_6nt_mkv3_m7 oligos_6nt_mkv3_m4 0.779 0.520 10 10 8 12 0.6667 0.8000 0.8000 D 2
oligos_6nt_mkv3_m4 oligos_6nt_mkv3_m7 oligos_6nt_mkv3_m4 oligos_6nt_mkv3_m7 0.779 0.520 10 10 8 12 0.6667 0.8000 0.8000 D -2 
 Host name	rsat
 Job started	2026-05-29.111138
 Job done	2026-05-29.111147
 Seconds	0.4
	user	0.4
	system	0.34
	cuser	7.57
;	csystem	1.19