RSAT - peak-motifs result

Analysis: sequences_by_fasta_6 (29/05/2026 15:24)

peak-motifs  -v 1 -title sequences_by_fasta_6 -i $RSAT/public_html/tmp/www-data/2026/05/29/peak-motifs.2026-05-29.152339_2026-05-29.152339_5Eq3AP/peak-motifspeak_seq -max_seq_len 1000 -markov auto -disco oligos,positions -nmotifs 5 -minol 6 -maxol 7 -no_merge_lengths -2str -origin center -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2026/05/29/peak-motifs.2026-05-29.152339_2026-05-29.152339_5Eq3AP

motif discovery
oligos_6nt_mkv2	oligos_6nt_mkv2_m1 assembly: tccacggaa (sig=21.77; e-value=1.7e-22) RC: ttccgtgga oligos_6nt_mkv2_m2 assembly: taataaa (sig=2.02; e-value=0.0095) RC: tttatta oligos_6nt_mkv2_m3 assembly: cccccc (sig=1.22; e-value=0.06) RC: gggggg oligos_6nt_mkv2_m4 assembly: aaataaa (sig=0.95; e-value=0.11) RC: tttattt oligos_6nt_mkv2_m5 assembly: ccgcgg (sig=0.43; e-value=0.37) RC: ccgcgg	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
positions_6nt	Not a single significant pattern	[positions_6nt]
oligos_7nt_mkv2	oligos_7nt_mkv2_m1 assembly: ttccacggaa (sig=22.84; e-value=1.4e-23) RC: ttccgtggaa oligos_7nt_mkv2_m2 assembly: ccccccc (sig=2.92; e-value=0.0012) RC: ggggggg oligos_7nt_mkv2_m3 assembly: cccacggaa (sig=22.84; e-value=1.4e-23) RC: ttccgtggg oligos_7nt_mkv2_m4 assembly: taataaa (sig=0.43; e-value=0.37) RC: tttatta oligos_7nt_mkv2_m5 assembly: gataata (sig=0.33; e-value=0.47) RC: tattatc	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
positions_7nt	Not a single significant pattern	[positions_7nt]

Motif discovery
Motif 1   oligos_6nt_mkv2_m1	k-mer sig=21.77; evalue=1.7e-22 vytCCACGGAams SKTTCCGTGGARB	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 20 (36.36%) Max nb of predicted sites per peak: 7  (ChrE_C_glabrata_CBS138_bPeaks_1) Mean nb of predicted sites per peak: 2.75	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 2   oligos_6nt_mkv2_m2	k-mer sig=2.02; evalue=0.0095 amTAATAAwrm KYWTTATTAKT	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 15 (27.27%) Max nb of predicted sites per peak: 5  (mito_C_glabrata_CBS138_bPeak_5) Mean nb of predicted sites per peak: 1.87	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 3   oligos_6nt_mkv2_m3	k-mer sig=1.22; evalue=0.06 ccCCCCCCcc GGGGGGGGGG	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 8 (14.55%) Max nb of predicted sites per peak: 15  (ChrK_C_glabrata_CBS138_bPeak_1) Mean nb of predicted sites per peak: 5.25	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 4   oligos_6nt_mkv2_m4	k-mer sig=0.95; evalue=0.11 rwAAATAAAmr YKTTTATTTWY	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 17 (30.91%) Max nb of predicted sites per peak: 4  (mito_C_glabrata_CBS138_bPeak_4) Mean nb of predicted sites per peak: 1.59	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 5   oligos_6nt_mkv2_m5	k-mer sig=0.43; evalue=0.37 ytCCRCGGar YTCCGYGGAR	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 19 (34.55%) Max nb of predicted sites per peak: 14  (ChrE_C_glabrata_CBS138_bPeaks_1) Mean nb of predicted sites per peak: 4.68	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 6   oligos_7nt_mkv2_m1	k-mer sig=22.84; evalue=1.4e-23 svttCCrCGGAAys SRTTCCGYGGAABS	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 20 (36.36%) Max nb of predicted sites per peak: 7  (ChrM_C_glabrata_CBS138_bPeak_1) Mean nb of predicted sites per peak: 3.25	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 7   oligos_7nt_mkv2_m2	k-mer sig=2.92; evalue=0.0012 cCCCCCCCCCC GGGGGGGGGGG	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 7 (12.73%) Max nb of predicted sites per peak: 16  (ChrK_C_glabrata_CBS138_bPeak_1) Mean nb of predicted sites per peak: 8.14	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 8   oligos_7nt_mkv2_m3	k-mer sig=22.84; evalue=1.4e-23 syyCCACGGAaws SWTTCCGTGGRRS	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 19 (34.55%) Max nb of predicted sites per peak: 7  (ChrE_C_glabrata_CBS138_bPeaks_1) Mean nb of predicted sites per peak: 3.00	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 9   oligos_7nt_mkv2_m4	k-mer sig=0.43; evalue=0.37 amTAATAAArw WYTTTATTAKT	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 15 (27.27%) Max nb of predicted sites per peak: 4  (mito_C_glabrata_CBS138_bPeak_7) Mean nb of predicted sites per peak: 1.73	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 10   oligos_7nt_mkv2_m5	k-mer sig=0.33; evalue=0.47 wmGAtAATAck MGTATTATCKW	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 13 (23.64%) Max nb of predicted sites per peak: 3  (mito_C_glabrata_CBS138_bPeak_5) Mean nb of predicted sites per peak: 1.54	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]

Command:  peak-motifs  -v 1 -title sequences_by_fasta_6 -i $RSAT/public_html/tmp/www-data/2026/05/29/peak-motifs.2026-05-29.152339_2026-05-29.152339_5Eq3AP/peak-motifspeak_seq -max_seq_len 1000 -markov auto -disco oligos,positions -nmotifs 5 -minol 6 -maxol 7 -no_merge_lengths -2str -origin center -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2026/05/29/peak-motifs.2026-05-29.152339_2026-05-29.152339_5Eq3AP

Warning: Not a single pattern was found in file tmp/www-data/2026/05/29/peak-motifs.2026-05-29.152339_2026-05-29.152339_5Eq3AP/results/positions_6nt/peak-motifs_positions-2str-noov_6nt_ci50.tab

Warning: Not a single pattern was found in file tmp/www-data/2026/05/29/peak-motifs.2026-05-29.152339_2026-05-29.152339_5Eq3AP/results/positions_7nt/peak-motifs_positions-2str-noov_7nt_ci50.tab