position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2026/05/29/peak-motifs.2026-05-29.162601_2026-05-29.162601_GTDdF8/data/sequences/peak-motifs_test_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 1 -ci 20 -img_format png -title dmrl_glycine_up2 -origin end -offset -200 -o $RSAT/public_html/tmp/www-data/2026/05/29/peak-motifs.2026-05-29.162601_2026-05-29.162601_GTDdF8/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab Citation: van Helden, et al. (2000). Nucleic Acids Res 28, 1000-1010. Sequence file $RSAT/public_html/tmp/www-data/2026/05/29/peak-motifs.2026-05-29.162601_2026-05-29.162601_GTDdF8/data/sequences/peak-motifs_test_purged_ml40_mis3.fasta Sequence format fasta Sequence type dna Output file $RSAT/public_html/tmp/www-data/2026/05/29/peak-motifs.2026-05-29.162601_2026-05-29.162601_GTDdF8/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab Oligo length 1 Occurrences counted on a single strands Conditions of applicability checked. Background model estimation: homogeneous repartition Sequence statistics: Nb of sequences 17 Sum of sequence lengths 11671 Min sequence length 0 Max sequence length 701 Average sequence length 686 Possible positions 11671 Sequences: # length ID 1 455 BVRB_3g059400|Beta_vulgaris.RefBeet-1.2.2.60|BVRB_3g059400 2 701 BVRB_4g096340|Beta_vulgaris.RefBeet-1.2.2.60|BVRB_4g096340 3 701 T459_03445|Capsicum_annuum.ASM51225v2.60|T459_03445 4 701 T459_31204|Capsicum_annuum.ASM51225v2.60|T459_31204 5 701 AUR62023693.v1.0|Chenopodium_quinoa.PI614886.392.v1.JGI|AUR62023693.v1.0 6 701 Cla97C08G153070|Citrullus_lanatus.Cla97_v1.62|Cla97C08G153070 7 701 MELO3C011439.2|Cucumis_melo.Melonv4.60|MELO3C011439.2 8 701 Csa_6G366300|Cucumis_sativus.ASM407v2.60|Csa_6G366300 9 701 HanXRQr2_Chr13g0574171|Helianthus_annuus.HanXRQr2.0-SUNRISE.60|HanXRQr2_Chr13g0574171 10 701 HanXRQr2_Chr13g0574181|Helianthus_annuus.HanXRQr2.0-SUNRISE.60|HanXRQr2_Chr13g0574181 11 701 gene-LSAT_8X33320|Lactuca_sativa.Lsat_Salinas_v7.60|gene-LSAT_8X33320 12 701 gene25542|Medicago_truncatula.MtrunA17r50ANR.60|gene25542 13 701 107761937|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107761937 14 701 107793142|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107793142 15 701 107759548|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107759548 16 701 107812499|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107812499 17 701 gene-LOC110794951|Spinacia_oleracea.GCF020520425.1.RefSeq|gene-LOC110794951 Oligonucleotide statistics: Total occurrences 8464 Position interval parameters: Position interval 20 Number of windows 36 Total positions 11671 Degrees of freedom 35 K-mer clustering parameters: Number of clusters 0 Clustering method complete Position intervals: window [min,max] mid seq occ 1 -26 [-519,-500] -509.5 16 32 2 -25 [-499,-480] -489.5 16 320 3 -24 [-479,-460] -469.5 16 320 4 -23 [-459,-440] -449.5 16 320 5 -22 [-439,-420] -429.5 16 320 6 -21 [-419,-400] -409.5 16 320 7 -20 [-399,-380] -389.5 16 320 8 -19 [-379,-360] -369.5 16 320 9 -18 [-359,-340] -349.5 16 320 10 -17 [-339,-320] -329.5 16 320 11 -16 [-319,-300] -309.5 16 320 12 -15 [-299,-280] -289.5 16 320 13 -14 [-279,-260] -269.5 16 320 14 -13 [-259,-240] -249.5 17 336 15 -12 [-239,-220] -229.5 17 340 16 -11 [-219,-200] -209.5 17 340 17 -10 [-199,-180] -189.5 17 340 18 -9 [-179,-160] -169.5 17 340 19 -8 [-159,-140] -149.5 17 340 20 -7 [-139,-120] -129.5 17 340 21 -6 [-119,-100] -109.5 17 340 22 -5 [-99,-80] -89.5 17 340 23 -4 [-79,-60] -69.5 17 340 24 -3 [-59,-40] -49.5 17 340 25 -2 [-39,-20] -29.5 17 340 26 -1 [-19,0] -9.5 17 340 27 0 [1,20] 10.5 17 340 28 1 [21,40] 30.5 17 340 29 2 [41,60] 50.5 17 340 30 3 [61,80] 70.5 17 340 31 4 [81,100] 90.5 17 340 32 5 [101,120] 110.5 17 340 33 6 [121,140] 130.5 17 340 34 7 [141,160] 150.5 17 340 35 8 [161,180] 170.5 17 340 36 9 [181,200] 190.5 17 323 Column headers 1 seq pattern sequence 2 id pattern identifier 3 occ pattern occurrences 4 chi2 observed chi-square 5 df degrees of freedom 6 Pval P-value (probability for one word to be a false positive) 7 Eval E-value; expected number of false positives (Eval = Pval * nb_tests) 8 sig Significance (sig = -log10(Eval)) 9 rank rank of the pattern according to sorting criterion 10 -509.5 occurrences in window 1 [-519,-500] 11 -489.5 occurrences in window 2 [-499,-480] 12 -469.5 occurrences in window 3 [-479,-460] 13 -449.5 occurrences in window 4 [-459,-440] 14 -429.5 occurrences in window 5 [-439,-420] 15 -409.5 occurrences in window 6 [-419,-400] 16 -389.5 occurrences in window 7 [-399,-380] 17 -369.5 occurrences in window 8 [-379,-360] 18 -349.5 occurrences in window 9 [-359,-340] 19 -329.5 occurrences in window 10 [-339,-320] 20 -309.5 occurrences in window 11 [-319,-300] 21 -289.5 occurrences in window 12 [-299,-280] 22 -269.5 occurrences in window 13 [-279,-260] 23 -249.5 occurrences in window 14 [-259,-240] 24 -229.5 occurrences in window 15 [-239,-220] 25 -209.5 occurrences in window 16 [-219,-200] 26 -189.5 occurrences in window 17 [-199,-180] 27 -169.5 occurrences in window 18 [-179,-160] 28 -149.5 occurrences in window 19 [-159,-140] 29 -129.5 occurrences in window 20 [-139,-120] 30 -109.5 occurrences in window 21 [-119,-100] 31 -89.5 occurrences in window 22 [-99,-80] 32 -69.5 occurrences in window 23 [-79,-60] 33 -49.5 occurrences in window 24 [-59,-40] 34 -29.5 occurrences in window 25 [-39,-20] 35 -9.5 occurrences in window 26 [-19,0] 36 10.5 occurrences in window 27 [1,20] 37 30.5 occurrences in window 28 [21,40] 38 50.5 occurrences in window 29 [41,60] 39 70.5 occurrences in window 30 [61,80] 40 90.5 occurrences in window 31 [81,100] 41 110.5 occurrences in window 32 [101,120] 42 130.5 occurrences in window 33 [121,140] 43 150.5 occurrences in window 34 [141,160] 44 170.5 occurrences in window 35 [161,180] 45 190.5 occurrences in window 36 [181,200]
| seq | id | occ | chi2 | df | Pval | Eval | sig | rank | -509.5 | -489.5 | -469.5 | -449.5 | -429.5 | -409.5 | -389.5 | -369.5 | -349.5 | -329.5 | -309.5 | -289.5 | -269.5 | -249.5 | -229.5 | -209.5 | -189.5 | -169.5 | -149.5 | -129.5 | -109.5 | -89.5 | -69.5 | -49.5 | -29.5 | -9.5 | 10.5 | 30.5 | 50.5 | 70.5 | 90.5 | 110.5 | 130.5 | 150.5 | 170.5 | 190.5 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| c | c | 1730 | 192.1 | 35 | 1.4e-23 | 5.7e-23 | 22.25 | 1 | 3 | 27 | 33 | 37 | 36 | 37 | 34 | 34 | 45 | 39 | 38 | 33 | 39 | 36 | 37 | 27 | 37 | 37 | 37 | 28 | 50 | 44 | 65 | 61 | 54 | 55 | 66 | 66 | 68 | 67 | 72 | 77 | 78 | 79 | 81 | 73 |
| g | g | 1192 | 88.0 | 35 | 1.9e-06 | 7.5e-06 | 5.13 | 2 | 2 | 27 | 23 | 37 | 40 | 33 | 38 | 46 | 33 | 39 | 34 | 28 | 31 | 31 | 31 | 29 | 15 | 28 | 32 | 46 | 44 | 28 | 50 | 42 | 49 | 45 | 50 | 49 | 32 | 28 | 29 | 30 | 18 | 17 | 27 | 31 |
| a | a | 2908 | 77.8 | 35 | 4.3e-05 | 0.00017 | 3.77 | 3 | 5 | 56 | 74 | 75 | 81 | 94 | 79 | 60 | 88 | 88 | 82 | 92 | 64 | 96 | 88 | 80 | 69 | 92 | 96 | 105 | 97 | 83 | 90 | 100 | 94 | 101 | 100 | 99 | 90 | 72 | 52 | 86 | 84 | 67 | 75 | 54 |
| t | t | 2634 | 54.1 | 35 | 2.1e-02 | 0.083 | 1.08 | 4 | 6 | 53 | 66 | 75 | 63 | 64 | 76 | 79 | 62 | 80 | 83 | 87 | 99 | 82 | 74 | 67 | 77 | 74 | 70 | 81 | 69 | 74 | 82 | 73 | 84 | 74 | 70 | 66 | 59 | 68 | 90 | 88 | 78 | 77 | 64 | 100 |
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