/var/www/html/rsat/public_html/tmp/www-data/2026/05/29/peak-motifs.2026-05-29.162601_2026-05-29.162601_GTDdF8/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab 
 position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2026/05/29/peak-motifs.2026-05-29.162601_2026-05-29.162601_GTDdF8/data/sequences/peak-motifs_test_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 2 -ci 20 -img_format png -title dmrl_glycine_up2 -origin end -offset -200 -o $RSAT/public_html/tmp/www-data/2026/05/29/peak-motifs.2026-05-29.162601_2026-05-29.162601_GTDdF8/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
 Citation: van Helden, et al. (2000).  Nucleic Acids Res 28, 1000-1010.
 Sequence file                	$RSAT/public_html/tmp/www-data/2026/05/29/peak-motifs.2026-05-29.162601_2026-05-29.162601_GTDdF8/data/sequences/peak-motifs_test_purged_ml40_mis3.fasta
 Sequence format              	fasta
 Sequence type                	dna
 Output file                  	$RSAT/public_html/tmp/www-data/2026/05/29/peak-motifs.2026-05-29.162601_2026-05-29.162601_GTDdF8/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
 Oligo length                 	2
 Occurrences counted  on a single  strands
 Conditions of applicability checked.
 Background model estimation: homogeneous repartition
 Sequence statistics:
	Nb of sequences              	17
	Sum of sequence lengths      	11671
	Min sequence length          	0
	Max sequence length          	701
	Average sequence length      	686
	Possible positions           	11654
 Sequences:
	#	length	ID
	1	455	BVRB_3g059400|Beta_vulgaris.RefBeet-1.2.2.60|BVRB_3g059400
	2	701	BVRB_4g096340|Beta_vulgaris.RefBeet-1.2.2.60|BVRB_4g096340
	3	701	T459_03445|Capsicum_annuum.ASM51225v2.60|T459_03445
	4	701	T459_31204|Capsicum_annuum.ASM51225v2.60|T459_31204
	5	701	AUR62023693.v1.0|Chenopodium_quinoa.PI614886.392.v1.JGI|AUR62023693.v1.0
	6	701	Cla97C08G153070|Citrullus_lanatus.Cla97_v1.62|Cla97C08G153070
	7	701	MELO3C011439.2|Cucumis_melo.Melonv4.60|MELO3C011439.2
	8	701	Csa_6G366300|Cucumis_sativus.ASM407v2.60|Csa_6G366300
	9	701	HanXRQr2_Chr13g0574171|Helianthus_annuus.HanXRQr2.0-SUNRISE.60|HanXRQr2_Chr13g0574171
	10	701	HanXRQr2_Chr13g0574181|Helianthus_annuus.HanXRQr2.0-SUNRISE.60|HanXRQr2_Chr13g0574181
	11	701	gene-LSAT_8X33320|Lactuca_sativa.Lsat_Salinas_v7.60|gene-LSAT_8X33320
	12	701	gene25542|Medicago_truncatula.MtrunA17r50ANR.60|gene25542
	13	701	107761937|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107761937
	14	701	107793142|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107793142
	15	701	107759548|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107759548
	16	701	107812499|Nicotiana_tabacum_GCF_000715075.1_ASM71507v2|LOC107812499
	17	701	gene-LOC110794951|Spinacia_oleracea.GCF020520425.1.RefSeq|gene-LOC110794951
 Oligonucleotide statistics:
	Total occurrences    	8401
 Position interval parameters:
	Position interval    	20
	Number of windows    	36
	Total positions      	11654
	Degrees of freedom   	35
 K-mer clustering parameters:
	Number of clusters   	0
	Clustering method    	complete
 Position intervals:
	window	[min,max]	mid	seq	occ
	1	-26	[-519,-500]	-509.5	16	32
	2	-25	[-499,-480]	-489.5	16	320
	3	-24	[-479,-460]	-469.5	16	320
	4	-23	[-459,-440]	-449.5	16	320
	5	-22	[-439,-420]	-429.5	16	320
	6	-21	[-419,-400]	-409.5	16	320
	7	-20	[-399,-380]	-389.5	16	320
	8	-19	[-379,-360]	-369.5	16	320
	9	-18	[-359,-340]	-349.5	16	320
	10	-17	[-339,-320]	-329.5	16	320
	11	-16	[-319,-300]	-309.5	16	320
	12	-15	[-299,-280]	-289.5	16	320
	13	-14	[-279,-260]	-269.5	16	320
	14	-13	[-259,-240]	-249.5	17	336
	15	-12	[-239,-220]	-229.5	17	340
	16	-11	[-219,-200]	-209.5	17	340
	17	-10	[-199,-180]	-189.5	17	340
	18	-9	[-179,-160]	-169.5	17	340
	19	-8	[-159,-140]	-149.5	17	340
	20	-7	[-139,-120]	-129.5	17	340
	21	-6	[-119,-100]	-109.5	17	340
	22	-5	[-99,-80]	-89.5	17	340
	23	-4	[-79,-60]	-69.5	17	340
	24	-3	[-59,-40]	-49.5	17	340
	25	-2	[-39,-20]	-29.5	17	340
	26	-1	[-19,0]	-9.5	17	340
	27	0	[1,20]	10.5	17	340
	28	1	[21,40]	30.5	17	340
	29	2	[41,60]	50.5	17	340
	30	3	[61,80]	70.5	17	340
	31	4	[81,100]	90.5	17	340
	32	5	[101,120]	110.5	17	340
	33	6	[121,140]	130.5	17	340
	34	7	[141,160]	150.5	17	340
	35	8	[161,180]	170.5	17	340
	36	9	[181,200]	190.5	17	306

 Column headers
	1	seq            	pattern sequence
	2	id             	pattern identifier
	3	occ            	pattern occurrences
	4	chi2           	observed chi-square
	5	df             	degrees of freedom
	6	Pval           	P-value (probability for one word to be a false positive)
	7	Eval           	E-value; expected number of false positives (Eval = Pval * nb_tests)
	8	sig            	Significance (sig = -log10(Eval))
	9	rank           	rank of the pattern according to sorting criterion
	10	-509.5         	occurrences in window	1	[-519,-500]
	11	-489.5         	occurrences in window	2	[-499,-480]
	12	-469.5         	occurrences in window	3	[-479,-460]
	13	-449.5         	occurrences in window	4	[-459,-440]
	14	-429.5         	occurrences in window	5	[-439,-420]
	15	-409.5         	occurrences in window	6	[-419,-400]
	16	-389.5         	occurrences in window	7	[-399,-380]
	17	-369.5         	occurrences in window	8	[-379,-360]
	18	-349.5         	occurrences in window	9	[-359,-340]
	19	-329.5         	occurrences in window	10	[-339,-320]
	20	-309.5         	occurrences in window	11	[-319,-300]
	21	-289.5         	occurrences in window	12	[-299,-280]
	22	-269.5         	occurrences in window	13	[-279,-260]
	23	-249.5         	occurrences in window	14	[-259,-240]
	24	-229.5         	occurrences in window	15	[-239,-220]
	25	-209.5         	occurrences in window	16	[-219,-200]
	26	-189.5         	occurrences in window	17	[-199,-180]
	27	-169.5         	occurrences in window	18	[-179,-160]
	28	-149.5         	occurrences in window	19	[-159,-140]
	29	-129.5         	occurrences in window	20	[-139,-120]
	30	-109.5         	occurrences in window	21	[-119,-100]
	31	-89.5          	occurrences in window	22	[-99,-80]
	32	-69.5          	occurrences in window	23	[-79,-60]
	33	-49.5          	occurrences in window	24	[-59,-40]
	34	-29.5          	occurrences in window	25	[-39,-20]
	35	-9.5           	occurrences in window	26	[-19,0]
	36	10.5           	occurrences in window	27	[1,20]
	37	30.5           	occurrences in window	28	[21,40]
	38	50.5           	occurrences in window	29	[41,60]
	39	70.5           	occurrences in window	30	[61,80]
	40	90.5           	occurrences in window	31	[81,100]
	41	110.5          	occurrences in window	32	[101,120]
	42	130.5          	occurrences in window	33	[121,140]
	43	150.5          	occurrences in window	34	[141,160]
	44	170.5          	occurrences in window	35	[161,180]
	45	190.5          	occurrences in window	36	[181,200]
seq id occ chi2 df Pval Eval sig rank -509.5 -489.5 -469.5 -449.5 -429.5 -409.5 -389.5 -369.5 -349.5 -329.5 -309.5 -289.5 -269.5 -249.5 -229.5 -209.5 -189.5 -169.5 -149.5 -129.5 -109.5 -89.5 -69.5 -49.5 -29.5 -9.5 10.5 30.5 50.5 70.5 90.5 110.5 130.5 150.5 170.5 190.5
cc cc 349 115.8 35 1.4e-10 2.3e-09 8.64 1 0 5 4 7 4 3 6 7 13 8 4 4 7 7 5 3 5 4 8 0 14 10 18 17 16 13 15 11 11 14 10 20 18 17 24 17
tc tc 619 113.1 35 3.7e-10 5.8e-09 8.23 2 2 8 12 19 13 10 16 14 13 14 13 14 22 12 12 7 11 18 9 11 8 14 21 19 17 16 17 26 21 22 33 27 31 32 32 33
ct ct 506 95.0 35 1.9e-07 3e-06 5.52 3 0 8 8 12 10 15 11 7 8 16 12 7 17 12 12 12 16 12 7 8 13 8 12 16 15 11 15 16 15 19 31 29 26 22 20 28
aa aa 1125 85.2 35 4.5e-06 7.2e-05 4.14 4 3 19 36 31 28 48 29 16 35 37 27 29 19 38 30 32 30 42 41 42 37 29 34 48 38 40 40 41 42 29 9 32 33 21 24 16
ca ca 687 83.1 35 8.7e-06 0.00014 3.86 5 2 11 14 13 18 12 12 14 14 11 18 19 11 13 15 9 14 20 19 17 15 22 26 21 18 28 27 32 33 29 27 25 31 34 27 16
ta ta 722 76.5 35 6.3e-05 0.001 3.00 6 1 20 18 18 14 25 28 17 27 28 26 29 23 37 28 24 20 18 25 20 30 27 17 20 28 18 21 12 13 12 12 17 13 15 7 14
ga ga 360 74.6 35 1.1e-04 0.0018 2.75 7 1 6 5 14 20 11 8 12 14 14 11 12 11 11 13 13 4 12 14 21 15 8 8 12 8 16 13 12 3 1 2 11 7 4 8 5
gg gg 206 67.2 35 8.5e-04 0.014 1.87 8 1 7 2 8 6 8 11 10 4 7 5 2 2 4 2 3 3 4 3 12 7 3 14 8 9 9 9 13 5 5 3 4 2 2 4 5
tt tt 907 57.9 35 8.8e-03 0.14 0.85 9 3 20 27 26 20 21 24 34 16 25 31 34 42 27 24 27 35 27 23 32 21 23 35 21 23 23 19 17 19 19 32 32 26 25 18 36
ag ag 424 57.6 35 9.4e-03 0.15 0.82 10 1 10 8 10 15 9 14 15 14 14 12 14 14 16 13 15 1 10 13 15 19 11 20 15 18 18 16 18 10 6 5 9 7 4 8 7
gc gc 249 56.3 35 1.3e-02 0.2 0.70 11 0 4 6 3 5 7 3 7 4 4 11 4 2 4 7 4 6 5 5 4 13 7 14 11 12 5 13 14 10 12 10 7 5 5 7 9
ac ac 503 50.0 35 4.8e-02 0.77 0.12 12 1 10 10 9 13 16 9 8 13 13 8 13 8 13 11 10 14 12 13 15 14 12 15 11 12 18 21 19 23 18 20 23 27 20 20 11
gt gt 367 47.7 35 7.5e-02 1.2 -0.08 13 0 10 10 12 9 7 16 16 11 14 7 10 16 12 9 7 2 7 9 9 8 10 14 10 20 14 15 10 13 10 14 7 4 6 8 11
at at 835 38.0 35 3.3e-01 5.3 -0.73 14 0 17 20 23 23 21 27 20 26 24 35 34 23 28 31 22 23 28 29 33 27 31 21 26 24 25 22 21 14 18 17 22 16 22 23 19
tg tg 367 36.5 35 4.0e-01 6.4 -0.81 15 0 5 8 12 16 8 8 14 6 11 13 10 12 6 10 9 10 11 12 18 9 9 8 12 16 16 13 11 6 15 13 12 8 5 7 8
cg cg 175 30.0 35 7.1e-01 11 -1.06 16 1 3 7 5 4 6 5 6 10 4 4 3 4 4 5 0 2 1 3 3 8 4 9 6 5 3 8 7 8 5 4 3 2 6 10 7 
 Host name	rsat
 Job started	2026-05-29.162604
 Job done	2026-05-29.162604
 Seconds	0.17
	user	0.17
	system	0.02
	cuser	0
;	csystem	0