compare-matrices -v 1 -format transfac -file $RSAT/public_html/tmp/www-data/2026/05/29/peak-motifs.2026-05-29.162601_2026-05-29.162601_GTDdF8/results/discovered_motifs/peak-motifs_motifs_discovered.tf -distinct -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/05/29/peak-motifs.2026-05-29.162601_2026-05-29.162601_GTDdF8/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab Program version 1.118 Quick mode Input files file1 $RSAT/public_html/tmp/www-data/2026/05/29/peak-motifs.2026-05-29.162601_2026-05-29.162601_GTDdF8/results/discovered_motifs/peak-motifs_motifs_discovered.tf file2 $RSAT/public_html/tmp/www-data/2026/05/29/peak-motifs.2026-05-29.162601_2026-05-29.162601_GTDdF8/results/discovered_motifs/peak-motifs_motifs_discovered.tf Output files match_table_html $RSAT/public_html/tmp/www-data/2026/05/29/peak-motifs.2026-05-29.162601_2026-05-29.162601_GTDdF8/results/discovered_motifs/peak-motifs_motifs_disco_compa.html alignments_1ton_html $RSAT/public_html/tmp/www-data/2026/05/29/peak-motifs.2026-05-29.162601_2026-05-29.162601_GTDdF8/results/discovered_motifs/peak-motifs_motifs_disco_compa_alignments_1ton.html match_table_txt $RSAT/public_html/tmp/www-data/2026/05/29/peak-motifs.2026-05-29.162601_2026-05-29.162601_GTDdF8/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab html_index $RSAT/public_html/tmp/www-data/2026/05/29/peak-motifs.2026-05-29.162601_2026-05-29.162601_GTDdF8/results/discovered_motifs/peak-motifs_motifs_disco_compa_index.html alignments_1ton $RSAT/public_html/tmp/www-data/2026/05/29/peak-motifs.2026-05-29.162601_2026-05-29.162601_GTDdF8/results/discovered_motifs/peak-motifs_motifs_disco_compa_alignments_1ton.tab prefix $RSAT/public_html/tmp/www-data/2026/05/29/peak-motifs.2026-05-29.162601_2026-05-29.162601_GTDdF8/results/discovered_motifs/peak-motifs_motifs_disco_compa Matrices file1 11 matrices $RSAT/public_html/tmp/www-data/2026/05/29/peak-motifs.2026-05-29.162601_2026-05-29.162601_GTDdF8/results/discovered_motifs/peak-motifs_motifs_discovered.tf file1 1 10 21 file1 2 18 33 file1 3 12 31 file1 4 17 19 file1 5 18 32 file1 6 14 29 file1 7 15 46 file1 8 11 28 file1 9 20 46 file1 10 11 37 file1 11 27 21 ... 1 more matrices file2 11 matrices $RSAT/public_html/tmp/www-data/2026/05/29/peak-motifs.2026-05-29.162601_2026-05-29.162601_GTDdF8/results/discovered_motifs/peak-motifs_motifs_discovered.tf file2 1 10 21 file2 2 18 33 file2 3 12 31 file2 4 17 19 file2 5 18 32 file2 6 14 29 file2 7 15 46 file2 8 11 28 file2 9 20 46 file2 10 11 37 file2 11 27 21 ... 1 more matrices Column content 1 id1 Identifier of the first matrix 2 id2 Identifier of the second matrix 3 name1 Name of the first matrix 4 name2 Name of the second matrix 5 cor Pearson coefficient of correlation between frequency matrices 6 Ncor Normalized correlation. Ncor = cor * Wr 7 w1 Width of the first matrix 8 w2 Width of the second matrix 9 w Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset) 10 W Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w 11 Wr Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W 12 wr1 Alignment length relative to the width of the first matrix. wr1 = w/w1 13 wr2 Alignment length relative to the width of the second matrix. wr2 = w/w2 14 strand "strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct; R=reverse) 15 offset shift of the second matrix relative to the first matrix (negative:left; positive: right)
| id1 | id2 | name1 | name2 | cor | Ncor | w1 | w2 | w | W | Wr | wr1 | wr2 | strand | offset |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| dyads_m8 | dyads_m8 | dyads_m8 | dyads_m8 | 1.000 | 1.000 | 20 | 20 | 20 | 20 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| dyads_m7 | dyads_m7 | dyads_m7 | dyads_m7 | 1.000 | 1.000 | 11 | 11 | 11 | 11 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| dyads_m6 | dyads_m6 | dyads_m6 | dyads_m6 | 1.000 | 1.000 | 15 | 15 | 15 | 15 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_6-8nt_m1 | oligos_6-8nt_m1 | oligos_6-8nt_m1 | oligos_6-8nt_m1 | 1.000 | 1.000 | 10 | 10 | 10 | 10 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| dyads_m1 | dyads_m1 | dyads_m1 | dyads_m1 | 1.000 | 1.000 | 18 | 18 | 18 | 18 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| dyads_m9 | dyads_m9 | dyads_m9 | dyads_m9 | 1.000 | 1.000 | 11 | 11 | 11 | 11 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| dyads_m2 | dyads_m2 | dyads_m2 | dyads_m2 | 1.000 | 1.000 | 12 | 12 | 12 | 12 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| dyads_m3 | dyads_m3 | dyads_m3 | dyads_m3 | 1.000 | 1.000 | 17 | 17 | 17 | 17 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| dyads_m4 | dyads_m4 | dyads_m4 | dyads_m4 | 1.000 | 1.000 | 18 | 18 | 18 | 18 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| dyads_m5 | dyads_m5 | dyads_m5 | dyads_m5 | 1.000 | 1.000 | 14 | 14 | 14 | 14 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| dyads_m10 | dyads_m10 | dyads_m10 | dyads_m10 | 1.000 | 1.000 | 27 | 27 | 27 | 27 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| dyads_m2 | dyads_m6 | dyads_m2 | dyads_m6 | 0.803 | 0.642 | 12 | 15 | 12 | 15 | 0.8000 | 1.0000 | 0.8000 | D | -2 |
| dyads_m6 | dyads_m2 | dyads_m6 | dyads_m2 | 0.803 | 0.642 | 15 | 12 | 12 | 15 | 0.8000 | 0.8000 | 1.0000 | D | 2 |
| dyads_m1 | oligos_6-8nt_m1 | dyads_m1 | oligos_6-8nt_m1 | 0.916 | 0.509 | 18 | 10 | 10 | 18 | 0.5556 | 0.5556 | 1.0000 | D | 8 |
| oligos_6-8nt_m1 | dyads_m1 | oligos_6-8nt_m1 | dyads_m1 | 0.916 | 0.509 | 10 | 18 | 10 | 18 | 0.5556 | 1.0000 | 0.5556 | D | -8 |
Host name rsat Job started 2026-05-29.162623 Job done 2026-05-29.162627 Seconds 0.26 user 0.26 system 0.11 cuser 3.31 ; csystem 0.53